Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02875

Experiment: 1-ethyl-3-methylimidazolium acetate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02870 and AO356_02875 overlap by 1 nucleotidesAO356_02875 and AO356_02880 overlap by 25 nucleotidesAO356_02880 and AO356_02885 are separated by 168 nucleotides AO356_02870: AO356_02870 - thiol:disulfide interchange protein, at 631,431 to 633,158 _02870 AO356_02875: AO356_02875 - peroxiredoxin, at 633,158 to 634,027 _02875 AO356_02880: AO356_02880 - dihydroneopterin aldolase, at 634,003 to 634,770 _02880 AO356_02885: AO356_02885 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 634,939 to 635,745 _02885 Position (kb) 633 634 635Strain fitness (log2 ratio) -2 -1 0 1 2at 633.345 kb on - strand, within AO356_02875at 633.435 kb on + strand, within AO356_02875at 633.435 kb on + strand, within AO356_02875at 633.545 kb on + strand, within AO356_02875at 633.545 kb on + strand, within AO356_02875at 633.545 kb on + strand, within AO356_02875at 633.771 kb on - strand, within AO356_02875at 633.804 kb on + strand, within AO356_02875at 633.804 kb on + strand, within AO356_02875at 633.805 kb on - strand, within AO356_02875at 633.805 kb on - strand, within AO356_02875at 633.805 kb on - strand, within AO356_02875at 633.805 kb on - strand, within AO356_02875at 633.805 kb on - strand, within AO356_02875at 633.805 kb on - strand, within AO356_02875at 633.805 kb on - strand, within AO356_02875at 633.872 kb on + strand, within AO356_02875at 634.162 kb on + strand, within AO356_02880at 634.198 kb on + strand, within AO356_02880at 634.198 kb on + strand, within AO356_02880at 634.198 kb on + strand, within AO356_02880at 634.291 kb on + strand, within AO356_02880at 634.291 kb on + strand, within AO356_02880at 634.291 kb on + strand, within AO356_02880at 634.291 kb on + strand, within AO356_02880at 634.291 kb on + strand, within AO356_02880at 634.292 kb on - strand, within AO356_02880at 634.292 kb on - strand, within AO356_02880at 634.292 kb on - strand, within AO356_02880at 634.311 kb on + strand, within AO356_02880at 634.378 kb on + strand, within AO356_02880at 634.378 kb on + strand, within AO356_02880at 634.378 kb on + strand, within AO356_02880at 634.378 kb on + strand, within AO356_02880at 634.378 kb on + strand, within AO356_02880at 634.379 kb on - strand, within AO356_02880at 634.379 kb on - strand, within AO356_02880at 634.507 kb on - strand, within AO356_02880at 634.605 kb on - strand, within AO356_02880at 634.605 kb on - strand, within AO356_02880at 634.605 kb on - strand, within AO356_02880at 634.605 kb on - strand, within AO356_02880at 634.687 kb on + strand, within AO356_02880

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 10 mM
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633,345 - AO356_02875 0.21 +0.3
633,435 + AO356_02875 0.32 -1.9
633,435 + AO356_02875 0.32 +0.1
633,545 + AO356_02875 0.44 -1.0
633,545 + AO356_02875 0.44 -1.3
633,545 + AO356_02875 0.44 -2.1
633,771 - AO356_02875 0.70 -1.8
633,804 + AO356_02875 0.74 +0.3
633,804 + AO356_02875 0.74 -1.0
633,805 - AO356_02875 0.74 -0.6
633,805 - AO356_02875 0.74 +0.2
633,805 - AO356_02875 0.74 -2.0
633,805 - AO356_02875 0.74 -1.5
633,805 - AO356_02875 0.74 +0.1
633,805 - AO356_02875 0.74 +0.0
633,805 - AO356_02875 0.74 +0.7
633,872 + AO356_02875 0.82 +1.1
634,162 + AO356_02880 0.21 +0.2
634,198 + AO356_02880 0.25 +0.3
634,198 + AO356_02880 0.25 -0.3
634,198 + AO356_02880 0.25 +1.9
634,291 + AO356_02880 0.38 -0.9
634,291 + AO356_02880 0.38 +1.5
634,291 + AO356_02880 0.38 -0.1
634,291 + AO356_02880 0.38 -0.7
634,291 + AO356_02880 0.38 -1.0
634,292 - AO356_02880 0.38 -0.2
634,292 - AO356_02880 0.38 +0.4
634,292 - AO356_02880 0.38 +0.3
634,311 + AO356_02880 0.40 +0.6
634,378 + AO356_02880 0.49 -0.7
634,378 + AO356_02880 0.49 +0.3
634,378 + AO356_02880 0.49 +1.2
634,378 + AO356_02880 0.49 +0.2
634,378 + AO356_02880 0.49 +0.2
634,379 - AO356_02880 0.49 +0.4
634,379 - AO356_02880 0.49 -0.5
634,507 - AO356_02880 0.66 -0.1
634,605 - AO356_02880 0.78 +0.4
634,605 - AO356_02880 0.78 +0.2
634,605 - AO356_02880 0.78 +0.2
634,605 - AO356_02880 0.78 -0.9
634,687 + AO356_02880 0.89 +0.7

Or see this region's nucleotide sequence