Strain Fitness in Variovorax sp. OAS795 around ABID97_RS01770

Experiment: V2_10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS01765 and ABID97_RS01770 are separated by 87 nucleotidesABID97_RS01770 and ABID97_RS01775 overlap by 8 nucleotides ABID97_RS01765: ABID97_RS01765 - LysR family transcriptional regulator, at 346,639 to 347,547 _RS01765 ABID97_RS01770: ABID97_RS01770 - VOC family protein, at 347,635 to 348,183 _RS01770 ABID97_RS01775: ABID97_RS01775 - alpha/beta hydrolase, at 348,176 to 349,297 _RS01775 Position (kb) 347 348 349Strain fitness (log2 ratio) -3 -2 -1 0 1at 346.811 kb on + strand, within ABID97_RS01765at 346.811 kb on + strand, within ABID97_RS01765at 346.812 kb on - strand, within ABID97_RS01765at 346.871 kb on + strand, within ABID97_RS01765at 346.871 kb on + strand, within ABID97_RS01765at 346.871 kb on + strand, within ABID97_RS01765at 346.872 kb on - strand, within ABID97_RS01765at 346.872 kb on - strand, within ABID97_RS01765at 346.872 kb on - strand, within ABID97_RS01765at 346.872 kb on - strand, within ABID97_RS01765at 346.872 kb on - strand, within ABID97_RS01765at 346.872 kb on - strand, within ABID97_RS01765at 346.872 kb on - strand, within ABID97_RS01765at 346.904 kb on + strand, within ABID97_RS01765at 346.977 kb on - strand, within ABID97_RS01765at 347.547 kb on + strandat 347.548 kb on - strandat 347.548 kb on - strandat 347.553 kb on + strandat 347.590 kb on + strandat 347.591 kb on - strandat 347.725 kb on + strand, within ABID97_RS01770at 347.795 kb on - strand, within ABID97_RS01770at 347.795 kb on - strand, within ABID97_RS01770at 347.839 kb on + strand, within ABID97_RS01770at 347.839 kb on + strand, within ABID97_RS01770at 348.026 kb on - strand, within ABID97_RS01770at 348.266 kb on + strandat 348.266 kb on + strandat 348.266 kb on + strandat 348.267 kb on - strandat 348.267 kb on - strandat 348.347 kb on + strand, within ABID97_RS01775at 348.348 kb on - strand, within ABID97_RS01775at 348.348 kb on - strand, within ABID97_RS01775at 348.404 kb on + strand, within ABID97_RS01775at 348.404 kb on + strand, within ABID97_RS01775at 348.470 kb on + strand, within ABID97_RS01775at 348.470 kb on + strand, within ABID97_RS01775at 348.470 kb on + strand, within ABID97_RS01775at 348.471 kb on - strand, within ABID97_RS01775at 348.542 kb on + strand, within ABID97_RS01775at 348.543 kb on - strand, within ABID97_RS01775at 348.746 kb on + strand, within ABID97_RS01775at 348.746 kb on + strand, within ABID97_RS01775at 348.746 kb on + strand, within ABID97_RS01775at 348.746 kb on + strand, within ABID97_RS01775at 348.746 kb on + strand, within ABID97_RS01775at 348.747 kb on - strand, within ABID97_RS01775at 348.747 kb on - strand, within ABID97_RS01775at 348.747 kb on - strand, within ABID97_RS01775at 348.747 kb on - strand, within ABID97_RS01775at 348.747 kb on - strand, within ABID97_RS01775at 348.747 kb on - strand, within ABID97_RS01775at 348.747 kb on - strand, within ABID97_RS01775at 348.905 kb on + strand, within ABID97_RS01775at 349.001 kb on + strand, within ABID97_RS01775at 349.001 kb on + strand, within ABID97_RS01775at 349.128 kb on - strand, within ABID97_RS01775at 349.128 kb on - strand, within ABID97_RS01775

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
remove
346,811 + ABID97_RS01765 0.19 -0.2
346,811 + ABID97_RS01765 0.19 -0.1
346,812 - ABID97_RS01765 0.19 +0.6
346,871 + ABID97_RS01765 0.26 +0.1
346,871 + ABID97_RS01765 0.26 +0.6
346,871 + ABID97_RS01765 0.26 -0.4
346,872 - ABID97_RS01765 0.26 -0.1
346,872 - ABID97_RS01765 0.26 -0.3
346,872 - ABID97_RS01765 0.26 +0.7
346,872 - ABID97_RS01765 0.26 -0.1
346,872 - ABID97_RS01765 0.26 -0.1
346,872 - ABID97_RS01765 0.26 -0.9
346,872 - ABID97_RS01765 0.26 -1.0
346,904 + ABID97_RS01765 0.29 -2.9
346,977 - ABID97_RS01765 0.37 -0.2
347,547 + -0.8
347,548 - -1.2
347,548 - -0.4
347,553 + +0.1
347,590 + -1.1
347,591 - -1.2
347,725 + ABID97_RS01770 0.16 -0.6
347,795 - ABID97_RS01770 0.29 -0.8
347,795 - ABID97_RS01770 0.29 -0.3
347,839 + ABID97_RS01770 0.37 -1.1
347,839 + ABID97_RS01770 0.37 -1.0
348,026 - ABID97_RS01770 0.71 -1.4
348,266 + +0.3
348,266 + -1.0
348,266 + -0.7
348,267 - +0.1
348,267 - -1.6
348,347 + ABID97_RS01775 0.15 -1.7
348,348 - ABID97_RS01775 0.15 -0.6
348,348 - ABID97_RS01775 0.15 -0.2
348,404 + ABID97_RS01775 0.20 -0.7
348,404 + ABID97_RS01775 0.20 -0.7
348,470 + ABID97_RS01775 0.26 -0.7
348,470 + ABID97_RS01775 0.26 -0.4
348,470 + ABID97_RS01775 0.26 -1.3
348,471 - ABID97_RS01775 0.26 +0.1
348,542 + ABID97_RS01775 0.33 -0.6
348,543 - ABID97_RS01775 0.33 -0.1
348,746 + ABID97_RS01775 0.51 -0.2
348,746 + ABID97_RS01775 0.51 -0.1
348,746 + ABID97_RS01775 0.51 -0.2
348,746 + ABID97_RS01775 0.51 -0.5
348,746 + ABID97_RS01775 0.51 -0.5
348,747 - ABID97_RS01775 0.51 +0.3
348,747 - ABID97_RS01775 0.51 -0.4
348,747 - ABID97_RS01775 0.51 -0.3
348,747 - ABID97_RS01775 0.51 -1.0
348,747 - ABID97_RS01775 0.51 +0.2
348,747 - ABID97_RS01775 0.51 +0.7
348,747 - ABID97_RS01775 0.51 +0.2
348,905 + ABID97_RS01775 0.65 -0.0
349,001 + ABID97_RS01775 0.74 -0.7
349,001 + ABID97_RS01775 0.74 -0.6
349,128 - ABID97_RS01775 0.85 -0.4
349,128 - ABID97_RS01775 0.85 +0.0

Or see this region's nucleotide sequence