Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28505

Experiment: V2_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28495 and ABID97_RS28500 overlap by 1 nucleotidesABID97_RS28500 and ABID97_RS28505 are separated by 10 nucleotidesABID97_RS28505 and ABID97_RS28510 are separated by 16 nucleotides ABID97_RS28495: ABID97_RS28495 - FAD binding domain-containing protein, at 618,597 to 619,460 _RS28495 ABID97_RS28500: ABID97_RS28500 - SRPBCC domain-containing protein, at 619,460 to 620,287 _RS28500 ABID97_RS28505: ABID97_RS28505 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 620,298 to 622,598 _RS28505 ABID97_RS28510: ABID97_RS28510 - tripartite tricarboxylate transporter substrate binding protein, at 622,615 to 623,589 _RS28510 Position (kb) 620 621 622 623Strain fitness (log2 ratio) -2 -1 0 1 2 3at 619.555 kb on - strand, within ABID97_RS28500at 619.785 kb on - strand, within ABID97_RS28500at 620.039 kb on - strand, within ABID97_RS28500at 620.093 kb on + strand, within ABID97_RS28500at 620.094 kb on - strand, within ABID97_RS28500at 620.094 kb on - strand, within ABID97_RS28500at 620.094 kb on - strand, within ABID97_RS28500at 620.575 kb on + strand, within ABID97_RS28505at 620.575 kb on + strand, within ABID97_RS28505at 620.662 kb on + strand, within ABID97_RS28505at 620.663 kb on - strand, within ABID97_RS28505at 620.721 kb on + strand, within ABID97_RS28505at 620.915 kb on - strand, within ABID97_RS28505at 621.168 kb on + strand, within ABID97_RS28505at 621.216 kb on - strand, within ABID97_RS28505at 621.332 kb on + strand, within ABID97_RS28505at 621.333 kb on - strand, within ABID97_RS28505at 621.540 kb on + strand, within ABID97_RS28505at 621.540 kb on + strand, within ABID97_RS28505at 621.630 kb on + strand, within ABID97_RS28505at 621.653 kb on + strand, within ABID97_RS28505at 622.004 kb on + strand, within ABID97_RS28505at 622.005 kb on - strand, within ABID97_RS28505at 622.123 kb on + strand, within ABID97_RS28505at 622.549 kb on + strandat 622.550 kb on - strandat 622.616 kb on + strandat 622.616 kb on + strandat 622.616 kb on + strandat 622.616 kb on + strandat 622.746 kb on + strand, within ABID97_RS28510at 622.826 kb on + strand, within ABID97_RS28510at 622.826 kb on + strand, within ABID97_RS28510at 622.827 kb on - strand, within ABID97_RS28510at 622.827 kb on - strand, within ABID97_RS28510at 623.040 kb on - strand, within ABID97_RS28510at 623.126 kb on + strand, within ABID97_RS28510at 623.210 kb on + strand, within ABID97_RS28510at 623.210 kb on + strand, within ABID97_RS28510at 623.210 kb on + strand, within ABID97_RS28510at 623.211 kb on - strand, within ABID97_RS28510at 623.211 kb on - strand, within ABID97_RS28510at 623.211 kb on - strand, within ABID97_RS28510at 623.355 kb on - strand, within ABID97_RS28510at 623.447 kb on + strand, within ABID97_RS28510at 623.522 kb on - strandat 623.537 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_100
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619,555 - ABID97_RS28500 0.11 -1.4
619,785 - ABID97_RS28500 0.39 -0.2
620,039 - ABID97_RS28500 0.70 -0.6
620,093 + ABID97_RS28500 0.76 +1.9
620,094 - ABID97_RS28500 0.77 +1.9
620,094 - ABID97_RS28500 0.77 +0.7
620,094 - ABID97_RS28500 0.77 +0.1
620,575 + ABID97_RS28505 0.12 +0.1
620,575 + ABID97_RS28505 0.12 -1.1
620,662 + ABID97_RS28505 0.16 -0.1
620,663 - ABID97_RS28505 0.16 -0.0
620,721 + ABID97_RS28505 0.18 +0.6
620,915 - ABID97_RS28505 0.27 -0.3
621,168 + ABID97_RS28505 0.38 -0.7
621,216 - ABID97_RS28505 0.40 +3.4
621,332 + ABID97_RS28505 0.45 -0.5
621,333 - ABID97_RS28505 0.45 -0.8
621,540 + ABID97_RS28505 0.54 +0.7
621,540 + ABID97_RS28505 0.54 -0.1
621,630 + ABID97_RS28505 0.58 +0.2
621,653 + ABID97_RS28505 0.59 -0.6
622,004 + ABID97_RS28505 0.74 -0.8
622,005 - ABID97_RS28505 0.74 -0.9
622,123 + ABID97_RS28505 0.79 +1.9
622,549 + -0.3
622,550 - +0.2
622,616 + -0.0
622,616 + -0.3
622,616 + -0.4
622,616 + -0.3
622,746 + ABID97_RS28510 0.13 +0.3
622,826 + ABID97_RS28510 0.22 -0.5
622,826 + ABID97_RS28510 0.22 -0.4
622,827 - ABID97_RS28510 0.22 -0.6
622,827 - ABID97_RS28510 0.22 +1.0
623,040 - ABID97_RS28510 0.44 -0.2
623,126 + ABID97_RS28510 0.52 +1.1
623,210 + ABID97_RS28510 0.61 -0.6
623,210 + ABID97_RS28510 0.61 +1.2
623,210 + ABID97_RS28510 0.61 -0.7
623,211 - ABID97_RS28510 0.61 -0.5
623,211 - ABID97_RS28510 0.61 -1.8
623,211 - ABID97_RS28510 0.61 -0.4
623,355 - ABID97_RS28510 0.76 +0.2
623,447 + ABID97_RS28510 0.85 -1.0
623,522 - -0.4
623,537 - +2.0

Or see this region's nucleotide sequence