Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19000 and ABID97_RS19005 are separated by 44 nucleotides ABID97_RS19005 and ABID97_RS19010 are separated by 152 nucleotides ABID97_RS19010 and ABID97_RS19015 are separated by 186 nucleotides ABID97_RS19015 and ABID97_RS19020 are separated by 2 nucleotides
ABID97_RS19000: ABID97_RS19000 - VOC family protein, at 3,912,273 to 3,912,905
_RS19000
ABID97_RS19005: ABID97_RS19005 - 2Fe-2S iron-sulfur cluster-binding protein, at 3,912,950 to 3,913,273
_RS19005
ABID97_RS19010: ABID97_RS19010 - hypothetical protein, at 3,913,426 to 3,913,677
_RS19010
ABID97_RS19015: ABID97_RS19015 - transporter substrate-binding domain-containing protein, at 3,913,864 to 3,914,604
_RS19015
ABID97_RS19020: ABID97_RS19020 - 2-methylaconitate cis-trans isomerase PrpF, at 3,914,607 to 3,915,785
_RS19020
Position (kb)
3913
3914
3915 Strain fitness (log2 ratio)
-1
0
1
2 at 3912.932 kb on - strand at 3913.054 kb on - strand, within ABID97_RS19005 at 3913.258 kb on - strand at 3913.258 kb on - strand at 3913.273 kb on + strand at 3913.274 kb on - strand at 3913.281 kb on - strand at 3913.325 kb on + strand at 3913.650 kb on + strand, within ABID97_RS19010 at 3913.651 kb on - strand, within ABID97_RS19010 at 3914.114 kb on - strand, within ABID97_RS19015 at 3914.186 kb on - strand, within ABID97_RS19015 at 3914.199 kb on - strand, within ABID97_RS19015 at 3914.316 kb on - strand, within ABID97_RS19015 at 3914.685 kb on + strand at 3915.538 kb on + strand, within ABID97_RS19020
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 3,912,932 - +0.7 3,913,054 - ABID97_RS19005 0.32 +0.5 3,913,258 - +1.0 3,913,258 - +0.1 3,913,273 + +0.9 3,913,274 - -0.2 3,913,281 - +2.6 3,913,325 + +0.4 3,913,650 + ABID97_RS19010 0.89 +0.6 3,913,651 - ABID97_RS19010 0.89 -0.6 3,914,114 - ABID97_RS19015 0.34 +1.0 3,914,186 - ABID97_RS19015 0.43 +0.3 3,914,199 - ABID97_RS19015 0.45 -0.3 3,914,316 - ABID97_RS19015 0.61 +0.6 3,914,685 + +0.3 3,915,538 + ABID97_RS19020 0.79 -0.0
Or see this region's nucleotide sequence