Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19015

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS19000 and ABID97_RS19005 are separated by 44 nucleotidesABID97_RS19005 and ABID97_RS19010 are separated by 152 nucleotidesABID97_RS19010 and ABID97_RS19015 are separated by 186 nucleotidesABID97_RS19015 and ABID97_RS19020 are separated by 2 nucleotides ABID97_RS19000: ABID97_RS19000 - VOC family protein, at 3,912,273 to 3,912,905 _RS19000 ABID97_RS19005: ABID97_RS19005 - 2Fe-2S iron-sulfur cluster-binding protein, at 3,912,950 to 3,913,273 _RS19005 ABID97_RS19010: ABID97_RS19010 - hypothetical protein, at 3,913,426 to 3,913,677 _RS19010 ABID97_RS19015: ABID97_RS19015 - transporter substrate-binding domain-containing protein, at 3,913,864 to 3,914,604 _RS19015 ABID97_RS19020: ABID97_RS19020 - 2-methylaconitate cis-trans isomerase PrpF, at 3,914,607 to 3,915,785 _RS19020 Position (kb) 3913 3914 3915Strain fitness (log2 ratio) -1 0 1 2at 3912.932 kb on - strandat 3913.054 kb on - strand, within ABID97_RS19005at 3913.258 kb on - strandat 3913.258 kb on - strandat 3913.273 kb on + strandat 3913.274 kb on - strandat 3913.281 kb on - strandat 3913.325 kb on + strandat 3913.650 kb on + strand, within ABID97_RS19010at 3913.651 kb on - strand, within ABID97_RS19010at 3914.114 kb on - strand, within ABID97_RS19015at 3914.186 kb on - strand, within ABID97_RS19015at 3914.199 kb on - strand, within ABID97_RS19015at 3914.316 kb on - strand, within ABID97_RS19015at 3914.685 kb on + strandat 3915.538 kb on + strand, within ABID97_RS19020

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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3,912,932 - +0.7
3,913,054 - ABID97_RS19005 0.32 +0.5
3,913,258 - +1.0
3,913,258 - +0.1
3,913,273 + +0.9
3,913,274 - -0.2
3,913,281 - +2.6
3,913,325 + +0.4
3,913,650 + ABID97_RS19010 0.89 +0.6
3,913,651 - ABID97_RS19010 0.89 -0.6
3,914,114 - ABID97_RS19015 0.34 +1.0
3,914,186 - ABID97_RS19015 0.43 +0.3
3,914,199 - ABID97_RS19015 0.45 -0.3
3,914,316 - ABID97_RS19015 0.61 +0.6
3,914,685 + +0.3
3,915,538 + ABID97_RS19020 0.79 -0.0

Or see this region's nucleotide sequence