Experiment: V1_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS07015 and ABID97_RS07020 are separated by 12 nucleotides ABID97_RS07020 and ABID97_RS07025 are separated by 282 nucleotides ABID97_RS07025 and ABID97_RS07030 are separated by 194 nucleotides
ABID97_RS07015: ABID97_RS07015 - OsmC family protein, at 1,484,896 to 1,485,345
_RS07015
ABID97_RS07020: ABID97_RS07020 - 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase, at 1,485,358 to 1,485,987
_RS07020
ABID97_RS07025: ABID97_RS07025 - porin, at 1,486,270 to 1,487,514
_RS07025
ABID97_RS07030: ABID97_RS07030 - ABC transporter permease, at 1,487,709 to 1,488,689
_RS07030
Position (kb)
1486
1487
1488 Strain fitness (log2 ratio)
-1
0
1 at 1485.270 kb on + strand, within ABID97_RS07015 at 1485.270 kb on + strand, within ABID97_RS07015 at 1485.271 kb on - strand, within ABID97_RS07015 at 1485.271 kb on - strand, within ABID97_RS07015 at 1485.271 kb on - strand, within ABID97_RS07015 at 1485.271 kb on - strand, within ABID97_RS07015 at 1485.274 kb on + strand, within ABID97_RS07015 at 1485.274 kb on + strand, within ABID97_RS07015 at 1485.274 kb on + strand, within ABID97_RS07015 at 1485.274 kb on + strand, within ABID97_RS07015 at 1485.274 kb on + strand, within ABID97_RS07015 at 1485.274 kb on + strand, within ABID97_RS07015 at 1485.274 kb on + strand, within ABID97_RS07015 at 1485.275 kb on - strand, within ABID97_RS07015 at 1485.275 kb on - strand, within ABID97_RS07015 at 1485.275 kb on - strand, within ABID97_RS07015 at 1485.275 kb on - strand, within ABID97_RS07015 at 1485.275 kb on - strand, within ABID97_RS07015 at 1485.993 kb on + strand at 1487.587 kb on + strand at 1487.587 kb on + strand at 1487.681 kb on + strand at 1487.681 kb on + strand at 1487.681 kb on + strand at 1487.682 kb on - strand at 1487.682 kb on - strand at 1487.682 kb on - strand at 1487.682 kb on - strand at 1487.682 kb on - strand at 1487.793 kb on + strand at 1487.793 kb on + strand at 1487.793 kb on + strand at 1487.793 kb on + strand at 1487.793 kb on + strand at 1487.793 kb on + strand at 1487.794 kb on - strand at 1487.794 kb on - strand at 1488.061 kb on - strand, within ABID97_RS07030 at 1488.061 kb on - strand, within ABID97_RS07030 at 1488.363 kb on + strand, within ABID97_RS07030 at 1488.364 kb on - strand, within ABID97_RS07030 at 1488.364 kb on - strand, within ABID97_RS07030 at 1488.364 kb on - strand, within ABID97_RS07030 at 1488.364 kb on - strand, within ABID97_RS07030
Per-strain Table
Position Strand Gene LocusTag Fraction V1_10 remove 1,485,270 + ABID97_RS07015 0.83 +1.4 1,485,270 + ABID97_RS07015 0.83 -0.1 1,485,271 - ABID97_RS07015 0.83 -0.1 1,485,271 - ABID97_RS07015 0.83 +0.2 1,485,271 - ABID97_RS07015 0.83 +0.0 1,485,271 - ABID97_RS07015 0.83 +0.2 1,485,274 + ABID97_RS07015 0.84 +0.5 1,485,274 + ABID97_RS07015 0.84 -1.2 1,485,274 + ABID97_RS07015 0.84 -0.3 1,485,274 + ABID97_RS07015 0.84 +0.9 1,485,274 + ABID97_RS07015 0.84 -0.8 1,485,274 + ABID97_RS07015 0.84 +0.7 1,485,274 + ABID97_RS07015 0.84 +0.7 1,485,275 - ABID97_RS07015 0.84 +0.1 1,485,275 - ABID97_RS07015 0.84 +0.5 1,485,275 - ABID97_RS07015 0.84 +0.5 1,485,275 - ABID97_RS07015 0.84 +0.7 1,485,275 - ABID97_RS07015 0.84 +0.2 1,485,993 + +0.7 1,487,587 + +0.6 1,487,587 + +0.2 1,487,681 + +0.1 1,487,681 + +1.1 1,487,681 + +0.1 1,487,682 - +0.3 1,487,682 - -0.0 1,487,682 - +0.5 1,487,682 - +1.2 1,487,682 - +0.3 1,487,793 + -0.2 1,487,793 + -0.2 1,487,793 + +0.3 1,487,793 + -0.2 1,487,793 + -0.8 1,487,793 + -0.1 1,487,794 - -0.5 1,487,794 - +0.2 1,488,061 - ABID97_RS07030 0.36 +0.2 1,488,061 - ABID97_RS07030 0.36 +0.1 1,488,363 + ABID97_RS07030 0.67 -0.1 1,488,364 - ABID97_RS07030 0.67 +0.3 1,488,364 - ABID97_RS07030 0.67 -0.6 1,488,364 - ABID97_RS07030 0.67 +0.1 1,488,364 - ABID97_RS07030 0.67 -0.3
Or see this region's nucleotide sequence