Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07025

Experiment: V1_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07015 and ABID97_RS07020 are separated by 12 nucleotidesABID97_RS07020 and ABID97_RS07025 are separated by 282 nucleotidesABID97_RS07025 and ABID97_RS07030 are separated by 194 nucleotides ABID97_RS07015: ABID97_RS07015 - OsmC family protein, at 1,484,896 to 1,485,345 _RS07015 ABID97_RS07020: ABID97_RS07020 - 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase, at 1,485,358 to 1,485,987 _RS07020 ABID97_RS07025: ABID97_RS07025 - porin, at 1,486,270 to 1,487,514 _RS07025 ABID97_RS07030: ABID97_RS07030 - ABC transporter permease, at 1,487,709 to 1,488,689 _RS07030 Position (kb) 1486 1487 1488Strain fitness (log2 ratio) -1 0 1at 1485.270 kb on + strand, within ABID97_RS07015at 1485.270 kb on + strand, within ABID97_RS07015at 1485.271 kb on - strand, within ABID97_RS07015at 1485.271 kb on - strand, within ABID97_RS07015at 1485.271 kb on - strand, within ABID97_RS07015at 1485.271 kb on - strand, within ABID97_RS07015at 1485.274 kb on + strand, within ABID97_RS07015at 1485.274 kb on + strand, within ABID97_RS07015at 1485.274 kb on + strand, within ABID97_RS07015at 1485.274 kb on + strand, within ABID97_RS07015at 1485.274 kb on + strand, within ABID97_RS07015at 1485.274 kb on + strand, within ABID97_RS07015at 1485.274 kb on + strand, within ABID97_RS07015at 1485.275 kb on - strand, within ABID97_RS07015at 1485.275 kb on - strand, within ABID97_RS07015at 1485.275 kb on - strand, within ABID97_RS07015at 1485.275 kb on - strand, within ABID97_RS07015at 1485.275 kb on - strand, within ABID97_RS07015at 1485.993 kb on + strandat 1487.587 kb on + strandat 1487.587 kb on + strandat 1487.681 kb on + strandat 1487.681 kb on + strandat 1487.681 kb on + strandat 1487.682 kb on - strandat 1487.682 kb on - strandat 1487.682 kb on - strandat 1487.682 kb on - strandat 1487.682 kb on - strandat 1487.793 kb on + strandat 1487.793 kb on + strandat 1487.793 kb on + strandat 1487.793 kb on + strandat 1487.793 kb on + strandat 1487.793 kb on + strandat 1487.794 kb on - strandat 1487.794 kb on - strandat 1488.061 kb on - strand, within ABID97_RS07030at 1488.061 kb on - strand, within ABID97_RS07030at 1488.363 kb on + strand, within ABID97_RS07030at 1488.364 kb on - strand, within ABID97_RS07030at 1488.364 kb on - strand, within ABID97_RS07030at 1488.364 kb on - strand, within ABID97_RS07030at 1488.364 kb on - strand, within ABID97_RS07030

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Per-strain Table

Position Strand Gene LocusTag Fraction V1_10
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1,485,270 + ABID97_RS07015 0.83 +1.4
1,485,270 + ABID97_RS07015 0.83 -0.1
1,485,271 - ABID97_RS07015 0.83 -0.1
1,485,271 - ABID97_RS07015 0.83 +0.2
1,485,271 - ABID97_RS07015 0.83 +0.0
1,485,271 - ABID97_RS07015 0.83 +0.2
1,485,274 + ABID97_RS07015 0.84 +0.5
1,485,274 + ABID97_RS07015 0.84 -1.2
1,485,274 + ABID97_RS07015 0.84 -0.3
1,485,274 + ABID97_RS07015 0.84 +0.9
1,485,274 + ABID97_RS07015 0.84 -0.8
1,485,274 + ABID97_RS07015 0.84 +0.7
1,485,274 + ABID97_RS07015 0.84 +0.7
1,485,275 - ABID97_RS07015 0.84 +0.1
1,485,275 - ABID97_RS07015 0.84 +0.5
1,485,275 - ABID97_RS07015 0.84 +0.5
1,485,275 - ABID97_RS07015 0.84 +0.7
1,485,275 - ABID97_RS07015 0.84 +0.2
1,485,993 + +0.7
1,487,587 + +0.6
1,487,587 + +0.2
1,487,681 + +0.1
1,487,681 + +1.1
1,487,681 + +0.1
1,487,682 - +0.3
1,487,682 - -0.0
1,487,682 - +0.5
1,487,682 - +1.2
1,487,682 - +0.3
1,487,793 + -0.2
1,487,793 + -0.2
1,487,793 + +0.3
1,487,793 + -0.2
1,487,793 + -0.8
1,487,793 + -0.1
1,487,794 - -0.5
1,487,794 - +0.2
1,488,061 - ABID97_RS07030 0.36 +0.2
1,488,061 - ABID97_RS07030 0.36 +0.1
1,488,363 + ABID97_RS07030 0.67 -0.1
1,488,364 - ABID97_RS07030 0.67 +0.3
1,488,364 - ABID97_RS07030 0.67 -0.6
1,488,364 - ABID97_RS07030 0.67 +0.1
1,488,364 - ABID97_RS07030 0.67 -0.3

Or see this region's nucleotide sequence