Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5777

Experiment: Fluorophosphate 0.125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5773 and Pf6N2E2_5774 overlap by 4 nucleotidesPf6N2E2_5774 and Pf6N2E2_5775 are separated by 0 nucleotidesPf6N2E2_5775 and Pf6N2E2_5776 are separated by 29 nucleotidesPf6N2E2_5776 and Pf6N2E2_5777 are separated by 45 nucleotidesPf6N2E2_5777 and Pf6N2E2_5778 are separated by 17 nucleotidesPf6N2E2_5778 and Pf6N2E2_5779 are separated by 470 nucleotides Pf6N2E2_5773 - Transcriptional regulator, Cro/CI family, at 6,589,738 to 6,590,103 _5773 Pf6N2E2_5774 - FIG00954549: hypothetical protein, at 6,590,100 to 6,590,471 _5774 Pf6N2E2_5775 - FOG: TPR repeat, SEL1 subfamily, at 6,590,472 to 6,590,873 _5775 Pf6N2E2_5776 - hypothetical protein, at 6,590,903 to 6,591,016 _5776 Pf6N2E2_5777 - Rhs family protein, at 6,591,062 to 6,595,720 _5777 Pf6N2E2_5778 - hypothetical protein, at 6,595,738 to 6,595,857 _5778 Pf6N2E2_5779 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 6,596,328 to 6,598,115 _5779 Position (kb) 6591 6592 6593 6594 6595 6596Strain fitness (log2 ratio) -2 -1 0 1 2at 6590.107 kb on + strandat 6590.107 kb on + strandat 6590.107 kb on + strandat 6590.108 kb on - strandat 6590.176 kb on + strand, within Pf6N2E2_5774at 6590.176 kb on + strand, within Pf6N2E2_5774at 6590.176 kb on + strand, within Pf6N2E2_5774at 6590.176 kb on + strand, within Pf6N2E2_5774at 6590.177 kb on - strand, within Pf6N2E2_5774at 6590.177 kb on - strand, within Pf6N2E2_5774at 6590.177 kb on - strand, within Pf6N2E2_5774at 6590.184 kb on + strand, within Pf6N2E2_5774at 6590.185 kb on - strand, within Pf6N2E2_5774at 6590.356 kb on + strand, within Pf6N2E2_5774at 6590.356 kb on + strand, within Pf6N2E2_5774at 6590.357 kb on - strand, within Pf6N2E2_5774at 6590.357 kb on - strand, within Pf6N2E2_5774at 6590.442 kb on + strandat 6590.443 kb on - strandat 6590.443 kb on - strandat 6590.443 kb on - strandat 6590.625 kb on + strand, within Pf6N2E2_5775at 6590.625 kb on + strand, within Pf6N2E2_5775at 6590.626 kb on - strand, within Pf6N2E2_5775at 6590.626 kb on - strand, within Pf6N2E2_5775at 6590.626 kb on - strand, within Pf6N2E2_5775at 6590.634 kb on - strand, within Pf6N2E2_5775at 6590.634 kb on - strand, within Pf6N2E2_5775at 6590.866 kb on - strandat 6590.872 kb on - strandat 6590.915 kb on - strand, within Pf6N2E2_5776at 6590.954 kb on + strand, within Pf6N2E2_5776at 6590.954 kb on + strand, within Pf6N2E2_5776at 6590.955 kb on - strand, within Pf6N2E2_5776at 6590.955 kb on - strand, within Pf6N2E2_5776at 6590.955 kb on - strand, within Pf6N2E2_5776at 6590.955 kb on - strand, within Pf6N2E2_5776at 6591.122 kb on + strandat 6591.290 kb on - strandat 6591.332 kb on + strandat 6591.332 kb on + strandat 6591.332 kb on + strandat 6591.333 kb on - strandat 6591.453 kb on - strandat 6591.512 kb on + strandat 6591.512 kb on + strandat 6591.512 kb on + strandat 6591.512 kb on + strandat 6591.512 kb on + strandat 6591.512 kb on + strandat 6591.854 kb on - strand, within Pf6N2E2_5777at 6591.854 kb on - strand, within Pf6N2E2_5777at 6591.854 kb on - strand, within Pf6N2E2_5777at 6591.980 kb on + strand, within Pf6N2E2_5777at 6591.980 kb on + strand, within Pf6N2E2_5777at 6591.980 kb on + strand, within Pf6N2E2_5777at 6591.981 kb on - strand, within Pf6N2E2_5777at 6592.079 kb on + strand, within Pf6N2E2_5777at 6592.080 kb on - strand, within Pf6N2E2_5777at 6592.080 kb on - strand, within Pf6N2E2_5777at 6592.091 kb on + strand, within Pf6N2E2_5777at 6592.551 kb on - strand, within Pf6N2E2_5777at 6592.551 kb on - strand, within Pf6N2E2_5777at 6592.551 kb on - strand, within Pf6N2E2_5777at 6592.959 kb on - strand, within Pf6N2E2_5777at 6593.036 kb on + strand, within Pf6N2E2_5777at 6593.097 kb on - strand, within Pf6N2E2_5777at 6593.097 kb on - strand, within Pf6N2E2_5777at 6593.097 kb on - strand, within Pf6N2E2_5777at 6593.097 kb on - strand, within Pf6N2E2_5777at 6593.097 kb on - strand, within Pf6N2E2_5777at 6593.097 kb on - strand, within Pf6N2E2_5777at 6593.097 kb on - strand, within Pf6N2E2_5777at 6593.097 kb on - strand, within Pf6N2E2_5777at 6593.097 kb on - strand, within Pf6N2E2_5777at 6593.292 kb on - strand, within Pf6N2E2_5777at 6593.406 kb on - strand, within Pf6N2E2_5777at 6593.406 kb on - strand, within Pf6N2E2_5777at 6593.406 kb on - strand, within Pf6N2E2_5777at 6594.903 kb on - strand, within Pf6N2E2_5777at 6594.903 kb on - strand, within Pf6N2E2_5777at 6594.903 kb on - strand, within Pf6N2E2_5777at 6595.050 kb on - strand, within Pf6N2E2_5777at 6595.050 kb on - strand, within Pf6N2E2_5777at 6595.050 kb on - strand, within Pf6N2E2_5777at 6595.157 kb on + strand, within Pf6N2E2_5777at 6595.157 kb on + strand, within Pf6N2E2_5777at 6595.157 kb on + strand, within Pf6N2E2_5777at 6595.157 kb on + strand, within Pf6N2E2_5777at 6595.172 kb on + strand, within Pf6N2E2_5777at 6595.175 kb on + strand, within Pf6N2E2_5777at 6595.175 kb on + strand, within Pf6N2E2_5777at 6595.175 kb on + strand, within Pf6N2E2_5777at 6595.175 kb on + strand, within Pf6N2E2_5777at 6595.399 kb on + strandat 6595.399 kb on + strandat 6595.399 kb on + strandat 6595.400 kb on - strandat 6595.400 kb on - strandat 6595.400 kb on - strandat 6595.405 kb on + strandat 6595.405 kb on + strandat 6595.405 kb on + strandat 6595.406 kb on - strandat 6595.450 kb on + strandat 6595.451 kb on - strandat 6595.546 kb on - strandat 6595.550 kb on - strandat 6595.552 kb on + strandat 6595.562 kb on - strandat 6595.573 kb on + strandat 6595.573 kb on + strandat 6595.573 kb on + strandat 6595.574 kb on - strandat 6595.579 kb on + strandat 6595.579 kb on + strandat 6595.612 kb on - strandat 6595.716 kb on + strandat 6595.716 kb on + strandat 6595.716 kb on + strandat 6595.717 kb on - strandat 6595.739 kb on + strandat 6595.851 kb on + strandat 6595.874 kb on + strandat 6595.912 kb on + strandat 6595.916 kb on + strandat 6595.936 kb on + strandat 6595.939 kb on + strandat 6595.939 kb on + strandat 6595.939 kb on + strandat 6595.939 kb on + strandat 6595.945 kb on + strandat 6595.979 kb on + strandat 6595.979 kb on + strandat 6596.007 kb on + strandat 6596.008 kb on - strandat 6596.079 kb on + strandat 6596.079 kb on + strandat 6596.080 kb on - strandat 6596.080 kb on - strandat 6596.104 kb on + strandat 6596.104 kb on + strandat 6596.105 kb on - strandat 6596.198 kb on + strandat 6596.199 kb on - strandat 6596.199 kb on - strandat 6596.199 kb on - strandat 6596.216 kb on - strandat 6596.330 kb on - strandat 6596.330 kb on - strandat 6596.386 kb on + strandat 6596.386 kb on + strandat 6596.387 kb on - strandat 6596.387 kb on - strandat 6596.387 kb on - strandat 6596.387 kb on - strandat 6596.534 kb on + strand, within Pf6N2E2_5779at 6596.555 kb on + strand, within Pf6N2E2_5779at 6596.572 kb on - strand, within Pf6N2E2_5779at 6596.572 kb on - strand, within Pf6N2E2_5779at 6596.587 kb on + strand, within Pf6N2E2_5779

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Per-strain Table

Position Strand Gene LocusTag Fraction Fluorophosphate 0.125 M
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6,590,107 + +0.6
6,590,107 + +0.5
6,590,107 + -0.5
6,590,108 - +0.9
6,590,176 + Pf6N2E2_5774 0.20 +0.9
6,590,176 + Pf6N2E2_5774 0.20 +0.1
6,590,176 + Pf6N2E2_5774 0.20 -0.3
6,590,176 + Pf6N2E2_5774 0.20 +1.5
6,590,177 - Pf6N2E2_5774 0.21 +0.2
6,590,177 - Pf6N2E2_5774 0.21 +0.3
6,590,177 - Pf6N2E2_5774 0.21 +0.4
6,590,184 + Pf6N2E2_5774 0.23 +0.6
6,590,185 - Pf6N2E2_5774 0.23 -0.3
6,590,356 + Pf6N2E2_5774 0.69 +0.6
6,590,356 + Pf6N2E2_5774 0.69 -0.1
6,590,357 - Pf6N2E2_5774 0.69 +0.5
6,590,357 - Pf6N2E2_5774 0.69 -0.4
6,590,442 + -0.5
6,590,443 - -0.6
6,590,443 - +0.4
6,590,443 - -0.9
6,590,625 + Pf6N2E2_5775 0.38 -1.4
6,590,625 + Pf6N2E2_5775 0.38 +0.1
6,590,626 - Pf6N2E2_5775 0.38 +1.9
6,590,626 - Pf6N2E2_5775 0.38 +0.1
6,590,626 - Pf6N2E2_5775 0.38 -1.5
6,590,634 - Pf6N2E2_5775 0.40 -0.7
6,590,634 - Pf6N2E2_5775 0.40 +0.4
6,590,866 - +0.0
6,590,872 - -0.4
6,590,915 - Pf6N2E2_5776 0.11 -1.6
6,590,954 + Pf6N2E2_5776 0.45 -0.1
6,590,954 + Pf6N2E2_5776 0.45 -0.2
6,590,955 - Pf6N2E2_5776 0.46 -0.4
6,590,955 - Pf6N2E2_5776 0.46 -0.1
6,590,955 - Pf6N2E2_5776 0.46 -1.0
6,590,955 - Pf6N2E2_5776 0.46 +0.2
6,591,122 + -1.2
6,591,290 - +1.5
6,591,332 + -0.7
6,591,332 + +0.3
6,591,332 + -0.5
6,591,333 - +0.3
6,591,453 - +1.3
6,591,512 + +0.3
6,591,512 + -0.6
6,591,512 + -1.6
6,591,512 + +1.1
6,591,512 + +0.5
6,591,512 + -2.0
6,591,854 - Pf6N2E2_5777 0.17 +0.3
6,591,854 - Pf6N2E2_5777 0.17 -0.6
6,591,854 - Pf6N2E2_5777 0.17 -0.2
6,591,980 + Pf6N2E2_5777 0.20 +0.1
6,591,980 + Pf6N2E2_5777 0.20 -1.7
6,591,980 + Pf6N2E2_5777 0.20 -1.5
6,591,981 - Pf6N2E2_5777 0.20 +0.2
6,592,079 + Pf6N2E2_5777 0.22 +0.1
6,592,080 - Pf6N2E2_5777 0.22 -2.0
6,592,080 - Pf6N2E2_5777 0.22 -0.5
6,592,091 + Pf6N2E2_5777 0.22 +0.6
6,592,551 - Pf6N2E2_5777 0.32 +0.7
6,592,551 - Pf6N2E2_5777 0.32 -2.1
6,592,551 - Pf6N2E2_5777 0.32 -1.5
6,592,959 - Pf6N2E2_5777 0.41 -0.7
6,593,036 + Pf6N2E2_5777 0.42 +0.7
6,593,097 - Pf6N2E2_5777 0.44 -0.1
6,593,097 - Pf6N2E2_5777 0.44 -0.1
6,593,097 - Pf6N2E2_5777 0.44 -0.7
6,593,097 - Pf6N2E2_5777 0.44 -0.4
6,593,097 - Pf6N2E2_5777 0.44 +0.0
6,593,097 - Pf6N2E2_5777 0.44 -1.6
6,593,097 - Pf6N2E2_5777 0.44 -0.7
6,593,097 - Pf6N2E2_5777 0.44 -0.1
6,593,097 - Pf6N2E2_5777 0.44 -0.4
6,593,292 - Pf6N2E2_5777 0.48 +0.3
6,593,406 - Pf6N2E2_5777 0.50 -2.0
6,593,406 - Pf6N2E2_5777 0.50 -0.3
6,593,406 - Pf6N2E2_5777 0.50 +0.2
6,594,903 - Pf6N2E2_5777 0.82 +0.3
6,594,903 - Pf6N2E2_5777 0.82 +0.5
6,594,903 - Pf6N2E2_5777 0.82 +1.2
6,595,050 - Pf6N2E2_5777 0.86 +0.2
6,595,050 - Pf6N2E2_5777 0.86 -1.0
6,595,050 - Pf6N2E2_5777 0.86 -0.3
6,595,157 + Pf6N2E2_5777 0.88 -0.6
6,595,157 + Pf6N2E2_5777 0.88 -0.3
6,595,157 + Pf6N2E2_5777 0.88 +0.9
6,595,157 + Pf6N2E2_5777 0.88 +0.6
6,595,172 + Pf6N2E2_5777 0.88 +0.1
6,595,175 + Pf6N2E2_5777 0.88 -0.9
6,595,175 + Pf6N2E2_5777 0.88 +0.9
6,595,175 + Pf6N2E2_5777 0.88 +0.5
6,595,175 + Pf6N2E2_5777 0.88 -1.1
6,595,399 + -0.2
6,595,399 + +0.9
6,595,399 + -0.6
6,595,400 - +0.9
6,595,400 - -0.8
6,595,400 - -0.1
6,595,405 + -1.2
6,595,405 + -2.5
6,595,405 + +0.6
6,595,406 - +2.2
6,595,450 + -0.7
6,595,451 - -0.4
6,595,546 - -0.7
6,595,550 - -0.1
6,595,552 + -0.2
6,595,562 - -2.0
6,595,573 + +0.0
6,595,573 + +0.5
6,595,573 + -0.0
6,595,574 - -2.5
6,595,579 + -0.8
6,595,579 + +0.4
6,595,612 - -0.8
6,595,716 + +0.1
6,595,716 + +0.6
6,595,716 + -0.1
6,595,717 - +0.1
6,595,739 + -0.0
6,595,851 + -1.5
6,595,874 + -0.3
6,595,912 + +0.6
6,595,916 + -0.5
6,595,936 + -0.8
6,595,939 + +1.0
6,595,939 + +1.0
6,595,939 + -0.1
6,595,939 + +1.2
6,595,945 + -1.4
6,595,979 + +1.2
6,595,979 + -0.5
6,596,007 + -1.0
6,596,008 - +0.1
6,596,079 + -0.2
6,596,079 + -0.8
6,596,080 - -0.1
6,596,080 - +0.1
6,596,104 + -0.1
6,596,104 + +0.5
6,596,105 - +1.1
6,596,198 + +0.5
6,596,199 - -0.8
6,596,199 - -0.8
6,596,199 - -0.1
6,596,216 - +0.2
6,596,330 - -0.3
6,596,330 - -0.3
6,596,386 + -0.5
6,596,386 + -0.8
6,596,387 - +0.4
6,596,387 - +1.2
6,596,387 - +1.0
6,596,387 - -0.3
6,596,534 + Pf6N2E2_5779 0.12 +0.8
6,596,555 + Pf6N2E2_5779 0.13 +0.1
6,596,572 - Pf6N2E2_5779 0.14 +1.3
6,596,572 - Pf6N2E2_5779 0.14 -0.9
6,596,587 + Pf6N2E2_5779 0.14 +1.1

Or see this region's nucleotide sequence