Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05965

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05955 and MMP_RS05960 are separated by 12 nucleotidesMMP_RS05960 and MMP_RS05965 are separated by 30 nucleotidesMMP_RS05965 and MMP_RS05970 are separated by 13 nucleotidesMMP_RS05970 and MMP_RS05975 are separated by 20 nucleotidesMMP_RS05975 and MMP_RS05980 are separated by 22 nucleotides MMP_RS05955: MMP_RS05955 - CoB--CoM heterodisulfide reductase subunit C, at 1,142,799 to 1,143,377 _RS05955 MMP_RS05960: MMP_RS05960 - CoB--CoM heterodisulfide reductase subunit B, at 1,143,390 to 1,144,295 _RS05960 MMP_RS05965: MMP_RS05965 - carboxymuconolactone decarboxylase family protein, at 1,144,326 to 1,144,640 _RS05965 MMP_RS05970: MMP_RS05970 - class II SORL domain-containing protein, at 1,144,654 to 1,145,010 _RS05970 MMP_RS05975: MMP_RS05975 - hypothetical protein, at 1,145,031 to 1,145,297 _RS05975 MMP_RS05980: MMP_RS05980 - ferritin, at 1,145,320 to 1,145,835 _RS05980 Position (kb) 1144 1145Strain fitness (log2 ratio) -1 0 1at 1143.486 kb on + strand, within MMP_RS05960at 1143.675 kb on + strand, within MMP_RS05960at 1143.709 kb on - strand, within MMP_RS05960at 1143.742 kb on + strand, within MMP_RS05960at 1143.744 kb on + strand, within MMP_RS05960at 1143.769 kb on - strand, within MMP_RS05960at 1143.778 kb on - strand, within MMP_RS05960at 1143.779 kb on + strand, within MMP_RS05960at 1143.783 kb on - strand, within MMP_RS05960at 1143.856 kb on + strand, within MMP_RS05960at 1143.871 kb on - strand, within MMP_RS05960at 1143.871 kb on - strand, within MMP_RS05960at 1143.886 kb on - strand, within MMP_RS05960at 1143.886 kb on - strand, within MMP_RS05960at 1143.887 kb on + strand, within MMP_RS05960at 1143.887 kb on + strand, within MMP_RS05960at 1143.958 kb on - strand, within MMP_RS05960at 1143.960 kb on - strand, within MMP_RS05960at 1143.960 kb on - strand, within MMP_RS05960at 1143.961 kb on + strand, within MMP_RS05960at 1143.961 kb on + strand, within MMP_RS05960at 1143.963 kb on - strand, within MMP_RS05960at 1143.964 kb on + strand, within MMP_RS05960at 1143.977 kb on - strand, within MMP_RS05960at 1144.193 kb on + strand, within MMP_RS05960at 1144.293 kb on - strandat 1144.544 kb on + strand, within MMP_RS05965at 1144.580 kb on + strand, within MMP_RS05965at 1144.580 kb on + strand, within MMP_RS05965at 1144.653 kb on + strandat 1144.785 kb on + strand, within MMP_RS05970at 1144.829 kb on - strand, within MMP_RS05970at 1144.830 kb on + strand, within MMP_RS05970at 1144.853 kb on - strand, within MMP_RS05970at 1145.108 kb on - strand, within MMP_RS05975at 1145.288 kb on - strandat 1145.292 kb on + strandat 1145.303 kb on + strandat 1145.319 kb on - strandat 1145.319 kb on - strandat 1145.320 kb on + strandat 1145.357 kb on - strandat 1145.357 kb on - strandat 1145.357 kb on - strandat 1145.358 kb on + strandat 1145.358 kb on + strandat 1145.362 kb on + strandat 1145.380 kb on - strand, within MMP_RS05980at 1145.380 kb on - strand, within MMP_RS05980at 1145.447 kb on - strand, within MMP_RS05980at 1145.539 kb on + strand, within MMP_RS05980at 1145.567 kb on - strand, within MMP_RS05980at 1145.568 kb on + strand, within MMP_RS05980at 1145.568 kb on + strand, within MMP_RS05980at 1145.635 kb on + strand, within MMP_RS05980

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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1,143,486 + MMP_RS05960 0.11 -0.3
1,143,675 + MMP_RS05960 0.31 +0.0
1,143,709 - MMP_RS05960 0.35 +0.6
1,143,742 + MMP_RS05960 0.39 -0.1
1,143,744 + MMP_RS05960 0.39 +0.2
1,143,769 - MMP_RS05960 0.42 +0.0
1,143,778 - MMP_RS05960 0.43 +0.3
1,143,779 + MMP_RS05960 0.43 +0.9
1,143,783 - MMP_RS05960 0.43 +0.4
1,143,856 + MMP_RS05960 0.51 +0.0
1,143,871 - MMP_RS05960 0.53 +0.7
1,143,871 - MMP_RS05960 0.53 +0.8
1,143,886 - MMP_RS05960 0.55 -0.1
1,143,886 - MMP_RS05960 0.55 +0.3
1,143,887 + MMP_RS05960 0.55 -0.5
1,143,887 + MMP_RS05960 0.55 -0.0
1,143,958 - MMP_RS05960 0.63 +0.7
1,143,960 - MMP_RS05960 0.63 +0.3
1,143,960 - MMP_RS05960 0.63 +0.5
1,143,961 + MMP_RS05960 0.63 +0.2
1,143,961 + MMP_RS05960 0.63 -0.1
1,143,963 - MMP_RS05960 0.63 +0.5
1,143,964 + MMP_RS05960 0.63 +0.2
1,143,977 - MMP_RS05960 0.65 -0.1
1,144,193 + MMP_RS05960 0.89 -0.2
1,144,293 - +0.2
1,144,544 + MMP_RS05965 0.69 -0.0
1,144,580 + MMP_RS05965 0.81 +0.1
1,144,580 + MMP_RS05965 0.81 -0.2
1,144,653 + +0.2
1,144,785 + MMP_RS05970 0.37 -0.2
1,144,829 - MMP_RS05970 0.49 +0.3
1,144,830 + MMP_RS05970 0.49 +0.2
1,144,853 - MMP_RS05970 0.56 -0.2
1,145,108 - MMP_RS05975 0.29 +0.0
1,145,288 - -0.2
1,145,292 + -0.5
1,145,303 + -0.4
1,145,319 - +0.6
1,145,319 - +0.3
1,145,320 + -0.4
1,145,357 - +0.3
1,145,357 - -1.1
1,145,357 - +0.2
1,145,358 + +0.2
1,145,358 + +1.5
1,145,362 + +0.1
1,145,380 - MMP_RS05980 0.12 -0.2
1,145,380 - MMP_RS05980 0.12 +0.6
1,145,447 - MMP_RS05980 0.25 -0.7
1,145,539 + MMP_RS05980 0.42 +0.3
1,145,567 - MMP_RS05980 0.48 +0.5
1,145,568 + MMP_RS05980 0.48 +0.4
1,145,568 + MMP_RS05980 0.48 +0.1
1,145,635 + MMP_RS05980 0.61 +0.4

Or see this region's nucleotide sequence