Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_9 and Pf1N1B4_10 are separated by 208 nucleotides Pf1N1B4_10 and Pf1N1B4_11 are separated by 280 nucleotides
Pf1N1B4_9 - Probable type IV pilus assembly FimV-related transmembrane protein, at 7,960 to 10,593
_9
Pf1N1B4_10 - Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11), at 10,802 to 11,812
_10
Pf1N1B4_11 - Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11), at 12,093 to 13,205
_11
Position (kb)
10
11
12 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 10.104 kb on - strand, within Pf1N1B4_9 at 10.738 kb on + strand at 10.796 kb on + strand at 10.804 kb on - strand at 10.804 kb on - strand at 10.804 kb on - strand at 10.818 kb on - strand at 10.865 kb on + strand at 10.891 kb on + strand at 10.891 kb on + strand at 10.891 kb on + strand at 10.892 kb on - strand at 10.892 kb on - strand at 10.892 kb on - strand at 10.892 kb on - strand at 10.892 kb on - strand at 10.936 kb on - strand, within Pf1N1B4_10 at 11.107 kb on + strand, within Pf1N1B4_10 at 11.108 kb on - strand, within Pf1N1B4_10 at 11.108 kb on - strand, within Pf1N1B4_10 at 11.185 kb on + strand, within Pf1N1B4_10 at 11.186 kb on - strand, within Pf1N1B4_10 at 11.794 kb on + strand at 11.818 kb on + strand at 11.818 kb on + strand at 11.819 kb on - strand at 11.819 kb on - strand at 11.901 kb on - strand at 11.952 kb on + strand at 11.953 kb on - strand at 12.006 kb on + strand at 12.081 kb on + strand at 12.081 kb on + strand at 12.081 kb on + strand at 12.082 kb on - strand at 12.082 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 10,104 - Pf1N1B4_9 0.81 -0.2 10,738 + -0.1 10,796 + -0.4 10,804 - +0.6 10,804 - +0.2 10,804 - -1.1 10,818 - +0.8 10,865 + +0.1 10,891 + -0.8 10,891 + -0.0 10,891 + -0.4 10,892 - +0.4 10,892 - +0.4 10,892 - -0.9 10,892 - +1.2 10,892 - +0.1 10,936 - Pf1N1B4_10 0.13 +0.2 11,107 + Pf1N1B4_10 0.30 -0.1 11,108 - Pf1N1B4_10 0.30 -1.5 11,108 - Pf1N1B4_10 0.30 +0.2 11,185 + Pf1N1B4_10 0.38 -0.9 11,186 - Pf1N1B4_10 0.38 +0.7 11,794 + +0.7 11,818 + -1.1 11,818 + -0.3 11,819 - -0.6 11,819 - -0.4 11,901 - -0.5 11,952 + +0.4 11,953 - -1.9 12,006 + +0.7 12,081 + +0.1 12,081 + -0.4 12,081 + +1.3 12,082 - -0.6 12,082 - +1.8
Or see this region's nucleotide sequence