Strain Fitness in Pantoea sp. MT58 around IAI47_19805

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_19800 and IAI47_19805 overlap by 1 nucleotidesIAI47_19805 and IAI47_19810 are separated by 86 nucleotides IAI47_19800: IAI47_19800 - Gfo/Idh/MocA family oxidoreductase, at 186,152 to 187,165 _19800 IAI47_19805: IAI47_19805 - TIM barrel protein, at 187,165 to 187,944 _19805 IAI47_19810: IAI47_19810 - substrate-binding domain-containing protein, at 188,031 to 188,954 _19810 Position (kb) 187 188Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 186.168 kb on + strandat 186.169 kb on - strandat 186.320 kb on + strand, within IAI47_19800at 186.320 kb on + strand, within IAI47_19800at 186.323 kb on - strand, within IAI47_19800at 186.451 kb on + strand, within IAI47_19800at 186.452 kb on - strand, within IAI47_19800at 186.452 kb on - strand, within IAI47_19800at 186.517 kb on - strand, within IAI47_19800at 186.529 kb on + strand, within IAI47_19800at 186.604 kb on + strand, within IAI47_19800at 186.605 kb on - strand, within IAI47_19800at 186.702 kb on + strand, within IAI47_19800at 186.740 kb on + strand, within IAI47_19800at 186.775 kb on + strand, within IAI47_19800at 186.781 kb on + strand, within IAI47_19800at 186.796 kb on + strand, within IAI47_19800at 186.797 kb on - strand, within IAI47_19800at 186.812 kb on - strand, within IAI47_19800at 186.812 kb on - strand, within IAI47_19800at 186.832 kb on + strand, within IAI47_19800at 186.838 kb on + strand, within IAI47_19800at 186.838 kb on + strand, within IAI47_19800at 186.839 kb on - strand, within IAI47_19800at 186.839 kb on - strand, within IAI47_19800at 186.839 kb on - strand, within IAI47_19800at 186.840 kb on + strand, within IAI47_19800at 186.840 kb on + strand, within IAI47_19800at 186.841 kb on - strand, within IAI47_19800at 186.866 kb on + strand, within IAI47_19800at 186.866 kb on + strand, within IAI47_19800at 186.866 kb on + strand, within IAI47_19800at 186.867 kb on - strand, within IAI47_19800at 186.867 kb on - strand, within IAI47_19800at 186.872 kb on + strand, within IAI47_19800at 186.872 kb on + strand, within IAI47_19800at 186.950 kb on + strand, within IAI47_19800at 186.951 kb on - strand, within IAI47_19800at 186.976 kb on + strand, within IAI47_19800at 186.977 kb on - strand, within IAI47_19800at 187.013 kb on + strand, within IAI47_19800at 187.013 kb on + strand, within IAI47_19800at 187.013 kb on + strand, within IAI47_19800at 187.013 kb on + strand, within IAI47_19800at 187.013 kb on + strand, within IAI47_19800at 187.013 kb on + strand, within IAI47_19800at 187.014 kb on - strand, within IAI47_19800at 187.014 kb on - strand, within IAI47_19800at 187.014 kb on - strand, within IAI47_19800at 187.014 kb on - strand, within IAI47_19800at 187.014 kb on - strand, within IAI47_19800at 187.014 kb on - strand, within IAI47_19800at 187.014 kb on - strand, within IAI47_19800at 187.128 kb on + strandat 187.203 kb on - strandat 187.203 kb on - strandat 187.203 kb on - strandat 187.221 kb on + strandat 187.290 kb on + strand, within IAI47_19805at 187.323 kb on + strand, within IAI47_19805at 187.324 kb on - strand, within IAI47_19805at 187.324 kb on - strand, within IAI47_19805at 187.330 kb on - strand, within IAI47_19805at 187.330 kb on - strand, within IAI47_19805at 187.330 kb on - strand, within IAI47_19805at 187.330 kb on - strand, within IAI47_19805at 187.339 kb on + strand, within IAI47_19805at 187.340 kb on - strand, within IAI47_19805at 187.351 kb on - strand, within IAI47_19805at 187.373 kb on + strand, within IAI47_19805at 187.373 kb on + strand, within IAI47_19805at 187.374 kb on - strand, within IAI47_19805at 187.382 kb on + strand, within IAI47_19805at 187.382 kb on + strand, within IAI47_19805at 187.383 kb on - strand, within IAI47_19805at 187.436 kb on + strand, within IAI47_19805at 187.509 kb on + strand, within IAI47_19805at 187.509 kb on + strand, within IAI47_19805at 187.509 kb on + strand, within IAI47_19805at 187.509 kb on + strand, within IAI47_19805at 187.510 kb on - strand, within IAI47_19805at 187.510 kb on - strand, within IAI47_19805at 187.510 kb on - strand, within IAI47_19805at 187.531 kb on - strand, within IAI47_19805at 187.593 kb on + strand, within IAI47_19805at 187.699 kb on + strand, within IAI47_19805at 187.699 kb on + strand, within IAI47_19805at 187.700 kb on - strand, within IAI47_19805at 187.700 kb on - strand, within IAI47_19805at 187.784 kb on + strand, within IAI47_19805at 187.785 kb on - strand, within IAI47_19805at 187.823 kb on - strand, within IAI47_19805at 187.853 kb on + strand, within IAI47_19805at 187.854 kb on - strand, within IAI47_19805at 187.854 kb on - strand, within IAI47_19805at 187.854 kb on - strand, within IAI47_19805at 187.854 kb on - strand, within IAI47_19805at 187.858 kb on + strand, within IAI47_19805at 187.900 kb on - strandat 187.900 kb on - strandat 187.936 kb on - strandat 187.942 kb on + strandat 187.942 kb on + strandat 187.942 kb on + strandat 187.942 kb on + strandat 187.943 kb on - strandat 187.943 kb on - strandat 187.943 kb on - strandat 187.943 kb on - strandat 187.943 kb on - strandat 187.985 kb on + strandat 187.986 kb on - strandat 187.986 kb on - strandat 187.996 kb on - strandat 188.004 kb on - strandat 188.075 kb on + strandat 188.076 kb on - strandat 188.076 kb on - strandat 188.076 kb on - strandat 188.076 kb on - strandat 188.102 kb on + strandat 188.124 kb on - strand, within IAI47_19810at 188.135 kb on + strand, within IAI47_19810at 188.135 kb on + strand, within IAI47_19810at 188.135 kb on + strand, within IAI47_19810at 188.136 kb on - strand, within IAI47_19810at 188.136 kb on - strand, within IAI47_19810at 188.136 kb on - strand, within IAI47_19810at 188.255 kb on + strand, within IAI47_19810at 188.255 kb on + strand, within IAI47_19810at 188.256 kb on - strand, within IAI47_19810at 188.280 kb on - strand, within IAI47_19810at 188.280 kb on - strand, within IAI47_19810at 188.297 kb on + strand, within IAI47_19810at 188.298 kb on - strand, within IAI47_19810at 188.298 kb on - strand, within IAI47_19810at 188.298 kb on - strand, within IAI47_19810at 188.311 kb on + strand, within IAI47_19810at 188.311 kb on + strand, within IAI47_19810at 188.311 kb on + strand, within IAI47_19810at 188.312 kb on - strand, within IAI47_19810at 188.393 kb on + strand, within IAI47_19810at 188.393 kb on + strand, within IAI47_19810at 188.394 kb on - strand, within IAI47_19810at 188.394 kb on - strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.466 kb on + strand, within IAI47_19810at 188.466 kb on + strand, within IAI47_19810at 188.466 kb on + strand, within IAI47_19810at 188.466 kb on + strand, within IAI47_19810at 188.467 kb on - strand, within IAI47_19810at 188.467 kb on - strand, within IAI47_19810at 188.474 kb on + strand, within IAI47_19810at 188.474 kb on + strand, within IAI47_19810at 188.474 kb on + strand, within IAI47_19810at 188.474 kb on + strand, within IAI47_19810at 188.475 kb on - strand, within IAI47_19810at 188.479 kb on + strand, within IAI47_19810at 188.479 kb on + strand, within IAI47_19810at 188.479 kb on + strand, within IAI47_19810at 188.479 kb on + strand, within IAI47_19810at 188.479 kb on + strand, within IAI47_19810at 188.479 kb on + strand, within IAI47_19810at 188.479 kb on + strand, within IAI47_19810at 188.480 kb on - strand, within IAI47_19810at 188.480 kb on - strand, within IAI47_19810at 188.480 kb on - strand, within IAI47_19810at 188.485 kb on + strand, within IAI47_19810at 188.485 kb on + strand, within IAI47_19810at 188.526 kb on - strand, within IAI47_19810at 188.552 kb on + strand, within IAI47_19810at 188.552 kb on + strand, within IAI47_19810at 188.553 kb on - strand, within IAI47_19810at 188.556 kb on + strand, within IAI47_19810at 188.557 kb on - strand, within IAI47_19810at 188.557 kb on - strand, within IAI47_19810at 188.557 kb on - strand, within IAI47_19810at 188.557 kb on - strand, within IAI47_19810at 188.558 kb on + strand, within IAI47_19810at 188.559 kb on - strand, within IAI47_19810at 188.559 kb on - strand, within IAI47_19810at 188.573 kb on + strand, within IAI47_19810at 188.639 kb on - strand, within IAI47_19810at 188.639 kb on - strand, within IAI47_19810at 188.639 kb on - strand, within IAI47_19810at 188.699 kb on + strand, within IAI47_19810at 188.700 kb on - strand, within IAI47_19810at 188.731 kb on + strand, within IAI47_19810at 188.777 kb on + strand, within IAI47_19810at 188.778 kb on - strand, within IAI47_19810at 188.802 kb on - strand, within IAI47_19810at 188.886 kb on - strandat 188.898 kb on + strandat 188.898 kb on + strandat 188.898 kb on + strandat 188.899 kb on - strandat 188.899 kb on - strandat 188.909 kb on + strandat 188.909 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
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186,168 + -0.2
186,169 - -0.5
186,320 + IAI47_19800 0.17 -0.5
186,320 + IAI47_19800 0.17 +1.8
186,323 - IAI47_19800 0.17 -2.4
186,451 + IAI47_19800 0.29 -0.1
186,452 - IAI47_19800 0.30 -0.7
186,452 - IAI47_19800 0.30 +0.1
186,517 - IAI47_19800 0.36 -0.1
186,529 + IAI47_19800 0.37 -0.7
186,604 + IAI47_19800 0.45 +1.2
186,605 - IAI47_19800 0.45 -0.2
186,702 + IAI47_19800 0.54 +3.0
186,740 + IAI47_19800 0.58 -1.4
186,775 + IAI47_19800 0.61 +0.2
186,781 + IAI47_19800 0.62 +0.6
186,796 + IAI47_19800 0.64 -2.8
186,797 - IAI47_19800 0.64 +1.0
186,812 - IAI47_19800 0.65 +1.3
186,812 - IAI47_19800 0.65 -1.9
186,832 + IAI47_19800 0.67 +1.5
186,838 + IAI47_19800 0.68 -0.5
186,838 + IAI47_19800 0.68 -0.8
186,839 - IAI47_19800 0.68 +0.2
186,839 - IAI47_19800 0.68 +1.5
186,839 - IAI47_19800 0.68 -1.4
186,840 + IAI47_19800 0.68 -0.5
186,840 + IAI47_19800 0.68 -0.7
186,841 - IAI47_19800 0.68 -1.5
186,866 + IAI47_19800 0.70 +1.5
186,866 + IAI47_19800 0.70 +2.2
186,866 + IAI47_19800 0.70 +0.7
186,867 - IAI47_19800 0.71 -0.4
186,867 - IAI47_19800 0.71 +0.6
186,872 + IAI47_19800 0.71 -0.5
186,872 + IAI47_19800 0.71 +0.4
186,950 + IAI47_19800 0.79 -0.4
186,951 - IAI47_19800 0.79 +1.4
186,976 + IAI47_19800 0.81 +0.3
186,977 - IAI47_19800 0.81 +0.6
187,013 + IAI47_19800 0.85 +2.5
187,013 + IAI47_19800 0.85 +1.1
187,013 + IAI47_19800 0.85 -0.9
187,013 + IAI47_19800 0.85 +3.0
187,013 + IAI47_19800 0.85 +1.0
187,013 + IAI47_19800 0.85 -1.5
187,014 - IAI47_19800 0.85 +0.8
187,014 - IAI47_19800 0.85 +0.4
187,014 - IAI47_19800 0.85 -3.0
187,014 - IAI47_19800 0.85 -1.3
187,014 - IAI47_19800 0.85 -0.2
187,014 - IAI47_19800 0.85 +0.5
187,014 - IAI47_19800 0.85 +1.3
187,128 + -1.0
187,203 - +1.8
187,203 - +2.8
187,203 - -0.8
187,221 + -0.0
187,290 + IAI47_19805 0.16 -0.8
187,323 + IAI47_19805 0.20 +0.6
187,324 - IAI47_19805 0.20 -2.2
187,324 - IAI47_19805 0.20 -0.9
187,330 - IAI47_19805 0.21 +0.8
187,330 - IAI47_19805 0.21 -1.7
187,330 - IAI47_19805 0.21 +2.0
187,330 - IAI47_19805 0.21 -0.7
187,339 + IAI47_19805 0.22 -0.8
187,340 - IAI47_19805 0.22 -1.2
187,351 - IAI47_19805 0.24 -1.5
187,373 + IAI47_19805 0.27 -0.3
187,373 + IAI47_19805 0.27 -0.5
187,374 - IAI47_19805 0.27 -1.1
187,382 + IAI47_19805 0.28 +1.7
187,382 + IAI47_19805 0.28 -1.2
187,383 - IAI47_19805 0.28 -1.1
187,436 + IAI47_19805 0.35 -1.5
187,509 + IAI47_19805 0.44 +1.5
187,509 + IAI47_19805 0.44 -1.9
187,509 + IAI47_19805 0.44 +0.1
187,509 + IAI47_19805 0.44 -0.3
187,510 - IAI47_19805 0.44 -1.0
187,510 - IAI47_19805 0.44 +0.2
187,510 - IAI47_19805 0.44 +0.0
187,531 - IAI47_19805 0.47 -1.5
187,593 + IAI47_19805 0.55 +0.2
187,699 + IAI47_19805 0.68 +4.9
187,699 + IAI47_19805 0.68 -1.0
187,700 - IAI47_19805 0.69 -1.3
187,700 - IAI47_19805 0.69 +1.5
187,784 + IAI47_19805 0.79 +0.3
187,785 - IAI47_19805 0.79 +0.1
187,823 - IAI47_19805 0.84 -0.9
187,853 + IAI47_19805 0.88 -1.0
187,854 - IAI47_19805 0.88 -1.0
187,854 - IAI47_19805 0.88 +0.3
187,854 - IAI47_19805 0.88 +0.1
187,854 - IAI47_19805 0.88 -1.7
187,858 + IAI47_19805 0.89 -1.9
187,900 - -2.9
187,900 - +2.8
187,936 - +0.8
187,942 + +1.8
187,942 + +1.8
187,942 + +1.2
187,942 + -0.0
187,943 - +0.5
187,943 - +0.3
187,943 - -1.4
187,943 - -0.0
187,943 - +0.3
187,985 + -1.8
187,986 - -1.8
187,986 - +0.8
187,996 - -0.8
188,004 - -0.5
188,075 + +1.6
188,076 - +1.6
188,076 - -1.1
188,076 - +1.1
188,076 - +1.8
188,102 + +0.6
188,124 - IAI47_19810 0.10 -0.6
188,135 + IAI47_19810 0.11 +4.1
188,135 + IAI47_19810 0.11 +2.0
188,135 + IAI47_19810 0.11 +1.0
188,136 - IAI47_19810 0.11 -1.5
188,136 - IAI47_19810 0.11 -1.2
188,136 - IAI47_19810 0.11 +1.8
188,255 + IAI47_19810 0.24 +0.2
188,255 + IAI47_19810 0.24 -0.5
188,256 - IAI47_19810 0.24 -0.5
188,280 - IAI47_19810 0.27 -0.4
188,280 - IAI47_19810 0.27 -0.8
188,297 + IAI47_19810 0.29 +2.1
188,298 - IAI47_19810 0.29 -1.4
188,298 - IAI47_19810 0.29 +0.8
188,298 - IAI47_19810 0.29 +1.8
188,311 + IAI47_19810 0.30 +2.8
188,311 + IAI47_19810 0.30 -0.8
188,311 + IAI47_19810 0.30 +1.7
188,312 - IAI47_19810 0.30 +1.0
188,393 + IAI47_19810 0.39 +0.8
188,393 + IAI47_19810 0.39 -1.0
188,394 - IAI47_19810 0.39 +0.1
188,394 - IAI47_19810 0.39 +1.8
188,400 + IAI47_19810 0.40 -1.5
188,400 + IAI47_19810 0.40 +1.5
188,400 + IAI47_19810 0.40 +1.7
188,400 + IAI47_19810 0.40 +1.5
188,400 + IAI47_19810 0.40 +1.0
188,400 + IAI47_19810 0.40 +1.0
188,400 + IAI47_19810 0.40 -1.4
188,400 + IAI47_19810 0.40 -1.4
188,400 + IAI47_19810 0.40 -0.2
188,400 + IAI47_19810 0.40 -2.6
188,400 + IAI47_19810 0.40 -0.7
188,400 + IAI47_19810 0.40 +1.4
188,400 + IAI47_19810 0.40 +0.2
188,400 + IAI47_19810 0.40 +1.8
188,400 + IAI47_19810 0.40 -1.5
188,400 + IAI47_19810 0.40 -2.0
188,400 + IAI47_19810 0.40 +0.5
188,400 + IAI47_19810 0.40 -0.1
188,401 - IAI47_19810 0.40 +1.2
188,401 - IAI47_19810 0.40 +2.5
188,401 - IAI47_19810 0.40 -0.8
188,401 - IAI47_19810 0.40 +3.4
188,401 - IAI47_19810 0.40 -2.7
188,401 - IAI47_19810 0.40 +2.0
188,401 - IAI47_19810 0.40 +1.8
188,401 - IAI47_19810 0.40 +3.2
188,401 - IAI47_19810 0.40 +0.8
188,401 - IAI47_19810 0.40 -2.0
188,401 - IAI47_19810 0.40 +0.5
188,401 - IAI47_19810 0.40 -0.5
188,401 - IAI47_19810 0.40 -3.7
188,401 - IAI47_19810 0.40 +1.5
188,401 - IAI47_19810 0.40 -2.5
188,401 - IAI47_19810 0.40 -0.2
188,401 - IAI47_19810 0.40 -0.1
188,401 - IAI47_19810 0.40 -0.4
188,401 - IAI47_19810 0.40 -2.1
188,466 + IAI47_19810 0.47 -2.3
188,466 + IAI47_19810 0.47 -0.4
188,466 + IAI47_19810 0.47 -0.0
188,466 + IAI47_19810 0.47 +0.7
188,467 - IAI47_19810 0.47 +1.8
188,467 - IAI47_19810 0.47 +0.9
188,474 + IAI47_19810 0.48 -1.2
188,474 + IAI47_19810 0.48 +2.7
188,474 + IAI47_19810 0.48 +0.2
188,474 + IAI47_19810 0.48 -1.0
188,475 - IAI47_19810 0.48 +0.2
188,479 + IAI47_19810 0.48 -2.5
188,479 + IAI47_19810 0.48 -1.3
188,479 + IAI47_19810 0.48 +0.3
188,479 + IAI47_19810 0.48 -0.0
188,479 + IAI47_19810 0.48 +0.6
188,479 + IAI47_19810 0.48 -2.0
188,479 + IAI47_19810 0.48 +0.7
188,480 - IAI47_19810 0.49 -2.0
188,480 - IAI47_19810 0.49 +1.8
188,480 - IAI47_19810 0.49 +0.5
188,485 + IAI47_19810 0.49 -0.7
188,485 + IAI47_19810 0.49 +1.6
188,526 - IAI47_19810 0.54 -1.2
188,552 + IAI47_19810 0.56 +1.9
188,552 + IAI47_19810 0.56 +1.0
188,553 - IAI47_19810 0.56 -1.4
188,556 + IAI47_19810 0.57 +2.7
188,557 - IAI47_19810 0.57 -1.2
188,557 - IAI47_19810 0.57 -0.4
188,557 - IAI47_19810 0.57 -0.5
188,557 - IAI47_19810 0.57 +0.6
188,558 + IAI47_19810 0.57 -0.8
188,559 - IAI47_19810 0.57 +0.2
188,559 - IAI47_19810 0.57 -1.2
188,573 + IAI47_19810 0.59 +0.5
188,639 - IAI47_19810 0.66 -0.5
188,639 - IAI47_19810 0.66 -0.4
188,639 - IAI47_19810 0.66 -0.7
188,699 + IAI47_19810 0.72 -1.9
188,700 - IAI47_19810 0.72 -0.2
188,731 + IAI47_19810 0.76 +0.6
188,777 + IAI47_19810 0.81 -0.7
188,778 - IAI47_19810 0.81 +1.0
188,802 - IAI47_19810 0.83 +0.1
188,886 - -0.3
188,898 + +0.2
188,898 + +2.3
188,898 + +3.0
188,899 - +0.4
188,899 - -0.2
188,909 + -0.2
188,909 + -0.1

Or see this region's nucleotide sequence