Experiment: V1_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19140 and ABID97_RS19145 are separated by 8 nucleotides ABID97_RS19145 and ABID97_RS19150 are separated by 2 nucleotides ABID97_RS19150 and ABID97_RS19155 are separated by 30 nucleotides
ABID97_RS19140: ABID97_RS19140 - glycosyltransferase, at 3,950,725 to 3,951,837
_RS19140
ABID97_RS19145: ABID97_RS19145 - hypothetical protein, at 3,951,846 to 3,952,805
_RS19145
ABID97_RS19150: ABID97_RS19150 - hypothetical protein, at 3,952,808 to 3,953,740
_RS19150
ABID97_RS19155: ABID97_RS19155 - polysaccharide biosynthesis protein, at 3,953,771 to 3,955,036
_RS19155
Position (kb) 3951
3952
3953 Strain fitness (log2 ratio) -1
0
1 at 3950.923 kb on + strand, within ABID97_RS19140 at 3950.924 kb on - strand, within ABID97_RS19140 at 3950.924 kb on - strand, within ABID97_RS19140 at 3950.986 kb on + strand, within ABID97_RS19140 at 3951.061 kb on + strand, within ABID97_RS19140 at 3951.331 kb on + strand, within ABID97_RS19140 at 3951.527 kb on - strand, within ABID97_RS19140 at 3951.943 kb on - strand, within ABID97_RS19145 at 3952.189 kb on - strand, within ABID97_RS19145 at 3952.360 kb on - strand, within ABID97_RS19145 at 3952.958 kb on + strand, within ABID97_RS19150 at 3952.958 kb on + strand, within ABID97_RS19150 at 3952.958 kb on + strand, within ABID97_RS19150 at 3952.959 kb on - strand, within ABID97_RS19150 at 3952.959 kb on - strand, within ABID97_RS19150 at 3952.959 kb on - strand, within ABID97_RS19150 at 3953.012 kb on + strand, within ABID97_RS19150 at 3953.205 kb on - strand, within ABID97_RS19150 at 3953.205 kb on - strand, within ABID97_RS19150 at 3953.256 kb on - strand, within ABID97_RS19150 at 3953.630 kb on + strand, within ABID97_RS19150 at 3953.630 kb on + strand, within ABID97_RS19150 at 3953.630 kb on + strand, within ABID97_RS19150 at 3953.631 kb on - strand, within ABID97_RS19150
Per-strain Table
Position Strand Gene LocusTag Fraction V1_10 remove 3,950,923 + ABID97_RS19140 0.18 -0.0 3,950,924 - ABID97_RS19140 0.18 +0.4 3,950,924 - ABID97_RS19140 0.18 +0.1 3,950,986 + ABID97_RS19140 0.23 -1.0 3,951,061 + ABID97_RS19140 0.30 +0.0 3,951,331 + ABID97_RS19140 0.54 +0.1 3,951,527 - ABID97_RS19140 0.72 +0.2 3,951,943 - ABID97_RS19145 0.10 +0.1 3,952,189 - ABID97_RS19145 0.36 +0.0 3,952,360 - ABID97_RS19145 0.54 -0.9 3,952,958 + ABID97_RS19150 0.16 +0.7 3,952,958 + ABID97_RS19150 0.16 +0.2 3,952,958 + ABID97_RS19150 0.16 +0.0 3,952,959 - ABID97_RS19150 0.16 -1.0 3,952,959 - ABID97_RS19150 0.16 +0.9 3,952,959 - ABID97_RS19150 0.16 +0.8 3,953,012 + ABID97_RS19150 0.22 +1.1 3,953,205 - ABID97_RS19150 0.43 -0.1 3,953,205 - ABID97_RS19150 0.43 -1.2 3,953,256 - ABID97_RS19150 0.48 +0.2 3,953,630 + ABID97_RS19150 0.88 +0.3 3,953,630 + ABID97_RS19150 0.88 +0.1 3,953,630 + ABID97_RS19150 0.88 +0.9 3,953,631 - ABID97_RS19150 0.88 -0.5
Or see this region's nucleotide sequence