Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17750

Experiment: V1_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17745 and ABID97_RS17750 are separated by 2 nucleotidesABID97_RS17750 and ABID97_RS17755 are separated by 54 nucleotidesABID97_RS17755 and ABID97_RS17760 are separated by 55 nucleotides ABID97_RS17745: ABID97_RS17745 - sensor histidine kinase, at 3,668,664 to 3,670,085 _RS17745 ABID97_RS17750: ABID97_RS17750 - RNA-binding S4 domain-containing protein, at 3,670,088 to 3,670,522 _RS17750 ABID97_RS17755: ABID97_RS17755 - PPK2 family polyphosphate kinase, at 3,670,577 to 3,671,386 _RS17755 ABID97_RS17760: ABID97_RS17760 - hypothetical protein, at 3,671,442 to 3,672,110 _RS17760 Position (kb) 3670 3671Strain fitness (log2 ratio) -1 0 1at 3669.955 kb on + strandat 3669.956 kb on - strandat 3670.109 kb on - strandat 3670.179 kb on + strand, within ABID97_RS17750at 3670.325 kb on + strand, within ABID97_RS17750at 3670.889 kb on + strand, within ABID97_RS17755at 3670.956 kb on - strand, within ABID97_RS17755at 3671.255 kb on + strand, within ABID97_RS17755at 3671.255 kb on + strand, within ABID97_RS17755at 3671.255 kb on + strand, within ABID97_RS17755at 3671.255 kb on + strand, within ABID97_RS17755at 3671.256 kb on - strand, within ABID97_RS17755

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Per-strain Table

Position Strand Gene LocusTag Fraction V1_10
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3,669,955 + +0.6
3,669,956 - +0.9
3,670,109 - -0.3
3,670,179 + ABID97_RS17750 0.21 -0.5
3,670,325 + ABID97_RS17750 0.54 +0.1
3,670,889 + ABID97_RS17755 0.39 +0.7
3,670,956 - ABID97_RS17755 0.47 -0.1
3,671,255 + ABID97_RS17755 0.84 -0.5
3,671,255 + ABID97_RS17755 0.84 -0.1
3,671,255 + ABID97_RS17755 0.84 -0.3
3,671,255 + ABID97_RS17755 0.84 -1.0
3,671,256 - ABID97_RS17755 0.84 -0.6

Or see this region's nucleotide sequence