Experiment: NP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09310 and ABID97_RS09315 are separated by 32 nucleotides ABID97_RS09315 and ABID97_RS09320 are separated by 71 nucleotides
ABID97_RS09310: ABID97_RS09310 - MFS transporter, at 1,956,914 to 1,958,356
_RS09310
ABID97_RS09315: ABID97_RS09315 - substrate-binding domain-containing protein, at 1,958,389 to 1,959,495
_RS09315
ABID97_RS09320: ABID97_RS09320 - aspartate aminotransferase family protein, at 1,959,567 to 1,960,922
_RS09320
Position (kb)
1958
1959
1960 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1957.416 kb on + strand, within ABID97_RS09310 at 1957.417 kb on - strand, within ABID97_RS09310 at 1957.447 kb on - strand, within ABID97_RS09310 at 1957.447 kb on - strand, within ABID97_RS09310 at 1957.471 kb on - strand, within ABID97_RS09310 at 1957.492 kb on - strand, within ABID97_RS09310 at 1957.492 kb on - strand, within ABID97_RS09310 at 1958.052 kb on + strand, within ABID97_RS09310 at 1958.146 kb on - strand, within ABID97_RS09310 at 1958.337 kb on + strand at 1958.368 kb on + strand at 1958.368 kb on + strand at 1958.939 kb on + strand, within ABID97_RS09315 at 1959.531 kb on - strand at 1959.680 kb on - strand at 1959.680 kb on - strand at 1959.680 kb on - strand at 1959.680 kb on - strand at 1959.776 kb on - strand, within ABID97_RS09320 at 1959.932 kb on - strand, within ABID97_RS09320 at 1959.961 kb on + strand, within ABID97_RS09320 at 1959.961 kb on + strand, within ABID97_RS09320 at 1959.994 kb on + strand, within ABID97_RS09320 at 1959.994 kb on + strand, within ABID97_RS09320 at 1959.994 kb on + strand, within ABID97_RS09320 at 1959.995 kb on - strand, within ABID97_RS09320 at 1959.995 kb on - strand, within ABID97_RS09320 at 1960.454 kb on - strand, within ABID97_RS09320
Per-strain Table
Position Strand Gene LocusTag Fraction NP remove 1,957,416 + ABID97_RS09310 0.35 +0.1 1,957,417 - ABID97_RS09310 0.35 -0.2 1,957,447 - ABID97_RS09310 0.37 +0.6 1,957,447 - ABID97_RS09310 0.37 +0.0 1,957,471 - ABID97_RS09310 0.39 -0.3 1,957,492 - ABID97_RS09310 0.40 +0.0 1,957,492 - ABID97_RS09310 0.40 -1.0 1,958,052 + ABID97_RS09310 0.79 -0.2 1,958,146 - ABID97_RS09310 0.85 +0.3 1,958,337 + -1.9 1,958,368 + -0.4 1,958,368 + -0.0 1,958,939 + ABID97_RS09315 0.50 +0.1 1,959,531 - -0.3 1,959,680 - +0.1 1,959,680 - +1.0 1,959,680 - +0.4 1,959,680 - -0.0 1,959,776 - ABID97_RS09320 0.15 -0.3 1,959,932 - ABID97_RS09320 0.27 -0.5 1,959,961 + ABID97_RS09320 0.29 -0.0 1,959,961 + ABID97_RS09320 0.29 +0.3 1,959,994 + ABID97_RS09320 0.31 -0.2 1,959,994 + ABID97_RS09320 0.31 -1.0 1,959,994 + ABID97_RS09320 0.31 +0.0 1,959,995 - ABID97_RS09320 0.32 +2.0 1,959,995 - ABID97_RS09320 0.32 +0.7 1,960,454 - ABID97_RS09320 0.65 +0.7
Or see this region's nucleotide sequence