Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4495

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_4494 and PfGW456L13_4495 are separated by 119 nucleotidesPfGW456L13_4495 and PfGW456L13_4496 are separated by 41 nucleotides PfGW456L13_4494 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 5,020,629 to 5,021,561 _4494 PfGW456L13_4495 - Protein YcgL, at 5,021,681 to 5,021,929 _4495 PfGW456L13_4496 - Ribonuclease D (EC 3.1.26.3), at 5,021,971 to 5,023,104 _4496 Position (kb) 5021 5022Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5020.681 kb on + strandat 5020.681 kb on + strandat 5020.682 kb on - strandat 5020.682 kb on - strandat 5020.682 kb on - strandat 5020.990 kb on + strand, within PfGW456L13_4494at 5020.990 kb on + strand, within PfGW456L13_4494at 5020.990 kb on + strand, within PfGW456L13_4494at 5020.991 kb on - strand, within PfGW456L13_4494at 5021.080 kb on + strand, within PfGW456L13_4494at 5021.080 kb on + strand, within PfGW456L13_4494at 5021.080 kb on + strand, within PfGW456L13_4494at 5021.080 kb on + strand, within PfGW456L13_4494at 5021.080 kb on + strand, within PfGW456L13_4494at 5021.080 kb on + strand, within PfGW456L13_4494at 5021.081 kb on - strand, within PfGW456L13_4494at 5021.081 kb on - strand, within PfGW456L13_4494at 5021.081 kb on - strand, within PfGW456L13_4494at 5021.081 kb on - strand, within PfGW456L13_4494at 5021.251 kb on + strand, within PfGW456L13_4494at 5021.251 kb on + strand, within PfGW456L13_4494at 5021.251 kb on + strand, within PfGW456L13_4494at 5021.251 kb on + strand, within PfGW456L13_4494at 5021.251 kb on + strand, within PfGW456L13_4494at 5021.252 kb on - strand, within PfGW456L13_4494at 5021.252 kb on - strand, within PfGW456L13_4494at 5021.252 kb on - strand, within PfGW456L13_4494at 5021.252 kb on - strand, within PfGW456L13_4494at 5021.252 kb on - strand, within PfGW456L13_4494at 5021.252 kb on - strand, within PfGW456L13_4494at 5021.252 kb on - strandat 5021.252 kb on - strand, within PfGW456L13_4494at 5021.252 kb on - strand, within PfGW456L13_4494at 5021.263 kb on + strand, within PfGW456L13_4494at 5021.394 kb on + strand, within PfGW456L13_4494at 5021.395 kb on - strand, within PfGW456L13_4494at 5021.524 kb on + strandat 5021.730 kb on + strand, within PfGW456L13_4495at 5021.730 kb on + strand, within PfGW456L13_4495at 5021.730 kb on + strand, within PfGW456L13_4495at 5021.730 kb on + strand, within PfGW456L13_4495at 5021.730 kb on + strand, within PfGW456L13_4495at 5021.731 kb on - strand, within PfGW456L13_4495at 5021.731 kb on - strand, within PfGW456L13_4495at 5021.731 kb on - strand, within PfGW456L13_4495at 5021.764 kb on - strand, within PfGW456L13_4495at 5021.919 kb on + strandat 5021.919 kb on + strandat 5021.919 kb on + strandat 5021.919 kb on + strandat 5021.919 kb on + strandat 5021.919 kb on + strandat 5021.919 kb on + strandat 5021.919 kb on + strandat 5021.919 kb on + strandat 5021.919 kb on + strandat 5021.919 kb on + strandat 5021.919 kb on + strandat 5021.920 kb on - strandat 5021.920 kb on - strandat 5021.920 kb on - strandat 5021.920 kb on - strandat 5021.920 kb on - strandat 5021.920 kb on - strandat 5021.920 kb on - strandat 5021.925 kb on + strandat 5021.925 kb on + strandat 5021.925 kb on + strandat 5021.925 kb on + strandat 5021.926 kb on - strandat 5021.926 kb on - strandat 5021.926 kb on - strandat 5021.952 kb on + strandat 5021.965 kb on + strandat 5021.965 kb on + strandat 5021.965 kb on + strandat 5021.966 kb on - strandat 5021.966 kb on - strandat 5022.164 kb on - strand, within PfGW456L13_4496at 5022.300 kb on + strand, within PfGW456L13_4496at 5022.300 kb on + strand, within PfGW456L13_4496at 5022.301 kb on - strand, within PfGW456L13_4496at 5022.301 kb on - strand, within PfGW456L13_4496at 5022.301 kb on - strand, within PfGW456L13_4496at 5022.301 kb on - strand, within PfGW456L13_4496at 5022.503 kb on + strand, within PfGW456L13_4496at 5022.504 kb on - strand, within PfGW456L13_4496at 5022.512 kb on + strand, within PfGW456L13_4496at 5022.575 kb on + strand, within PfGW456L13_4496at 5022.575 kb on + strand, within PfGW456L13_4496at 5022.575 kb on + strand, within PfGW456L13_4496at 5022.576 kb on - strand, within PfGW456L13_4496at 5022.608 kb on - strand, within PfGW456L13_4496at 5022.647 kb on + strand, within PfGW456L13_4496at 5022.647 kb on + strand, within PfGW456L13_4496at 5022.647 kb on + strand, within PfGW456L13_4496at 5022.647 kb on + strand, within PfGW456L13_4496at 5022.648 kb on - strand, within PfGW456L13_4496at 5022.648 kb on - strand, within PfGW456L13_4496at 5022.648 kb on - strand, within PfGW456L13_4496at 5022.648 kb on - strand, within PfGW456L13_4496at 5022.830 kb on - strand, within PfGW456L13_4496

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
5,020,681 + -0.7
5,020,681 + +0.1
5,020,682 - -0.1
5,020,682 - +0.9
5,020,682 - -0.4
5,020,990 + PfGW456L13_4494 0.39 -0.8
5,020,990 + PfGW456L13_4494 0.39 +0.9
5,020,990 + PfGW456L13_4494 0.39 +1.0
5,020,991 - PfGW456L13_4494 0.39 +0.2
5,021,080 + PfGW456L13_4494 0.48 -1.7
5,021,080 + PfGW456L13_4494 0.48 +1.4
5,021,080 + PfGW456L13_4494 0.48 -0.0
5,021,080 + PfGW456L13_4494 0.48 -0.4
5,021,080 + PfGW456L13_4494 0.48 +0.7
5,021,080 + PfGW456L13_4494 0.48 -0.4
5,021,081 - PfGW456L13_4494 0.48 +0.2
5,021,081 - PfGW456L13_4494 0.48 +0.6
5,021,081 - PfGW456L13_4494 0.48 +0.1
5,021,081 - PfGW456L13_4494 0.48 -0.1
5,021,251 + PfGW456L13_4494 0.67 -1.6
5,021,251 + PfGW456L13_4494 0.67 +0.5
5,021,251 + PfGW456L13_4494 0.67 +0.4
5,021,251 + PfGW456L13_4494 0.67 +0.8
5,021,251 + PfGW456L13_4494 0.67 +2.8
5,021,252 - PfGW456L13_4494 0.67 -1.0
5,021,252 - PfGW456L13_4494 0.67 -0.3
5,021,252 - PfGW456L13_4494 0.67 -0.0
5,021,252 - PfGW456L13_4494 0.67 -0.6
5,021,252 - PfGW456L13_4494 0.67 -0.2
5,021,252 - PfGW456L13_4494 0.67 +0.8
5,021,252 - +1.6
5,021,252 - PfGW456L13_4494 0.67 +0.4
5,021,252 - PfGW456L13_4494 0.67 +0.2
5,021,263 + PfGW456L13_4494 0.68 +1.7
5,021,394 + PfGW456L13_4494 0.82 -0.6
5,021,395 - PfGW456L13_4494 0.82 -0.7
5,021,524 + -1.4
5,021,730 + PfGW456L13_4495 0.20 -1.2
5,021,730 + PfGW456L13_4495 0.20 -0.5
5,021,730 + PfGW456L13_4495 0.20 -1.8
5,021,730 + PfGW456L13_4495 0.20 -2.9
5,021,730 + PfGW456L13_4495 0.20 -0.6
5,021,731 - PfGW456L13_4495 0.20 +0.4
5,021,731 - PfGW456L13_4495 0.20 +0.0
5,021,731 - PfGW456L13_4495 0.20 -0.8
5,021,764 - PfGW456L13_4495 0.33 +2.0
5,021,919 + -0.8
5,021,919 + +0.9
5,021,919 + -0.6
5,021,919 + -1.1
5,021,919 + -0.1
5,021,919 + +0.0
5,021,919 + -0.9
5,021,919 + -0.2
5,021,919 + +1.4
5,021,919 + -1.2
5,021,919 + -1.6
5,021,919 + -0.7
5,021,920 - -0.1
5,021,920 - +1.4
5,021,920 - -1.0
5,021,920 - +0.4
5,021,920 - -0.8
5,021,920 - -0.8
5,021,920 - +0.5
5,021,925 + -0.4
5,021,925 + -1.4
5,021,925 + +1.3
5,021,925 + -0.5
5,021,926 - -0.7
5,021,926 - -0.1
5,021,926 - +1.4
5,021,952 + -1.4
5,021,965 + +1.0
5,021,965 + -0.3
5,021,965 + +0.7
5,021,966 - -0.9
5,021,966 - +1.8
5,022,164 - PfGW456L13_4496 0.17 -0.6
5,022,300 + PfGW456L13_4496 0.29 +2.0
5,022,300 + PfGW456L13_4496 0.29 +0.1
5,022,301 - PfGW456L13_4496 0.29 +0.0
5,022,301 - PfGW456L13_4496 0.29 -1.9
5,022,301 - PfGW456L13_4496 0.29 +1.0
5,022,301 - PfGW456L13_4496 0.29 -0.1
5,022,503 + PfGW456L13_4496 0.47 -1.7
5,022,504 - PfGW456L13_4496 0.47 +1.0
5,022,512 + PfGW456L13_4496 0.48 +2.4
5,022,575 + PfGW456L13_4496 0.53 -1.1
5,022,575 + PfGW456L13_4496 0.53 -0.0
5,022,575 + PfGW456L13_4496 0.53 +0.9
5,022,576 - PfGW456L13_4496 0.53 +0.4
5,022,608 - PfGW456L13_4496 0.56 +1.0
5,022,647 + PfGW456L13_4496 0.60 -0.4
5,022,647 + PfGW456L13_4496 0.60 +0.0
5,022,647 + PfGW456L13_4496 0.60 +0.3
5,022,647 + PfGW456L13_4496 0.60 -0.6
5,022,648 - PfGW456L13_4496 0.60 -0.1
5,022,648 - PfGW456L13_4496 0.60 +0.1
5,022,648 - PfGW456L13_4496 0.60 +0.5
5,022,648 - PfGW456L13_4496 0.60 +0.0
5,022,830 - PfGW456L13_4496 0.76 +0.0

Or see this region's nucleotide sequence