Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4105 and PfGW456L13_4106 are separated by 107 nucleotides PfGW456L13_4106 and PfGW456L13_4107 are separated by 294 nucleotides PfGW456L13_4107 and PfGW456L13_4108 are separated by 2 nucleotides PfGW456L13_4108 and PfGW456L13_4109 are separated by 62 nucleotides
PfGW456L13_4105 - Major porin and structural outer membrane porin OprF, at 4,617,929 to 4,618,960
_4105
PfGW456L13_4106 - DNA-directed RNA polymerase specialized sigma subunit, sigma24-like, at 4,619,068 to 4,619,454
_4106
PfGW456L13_4107 - CmpX, at 4,619,749 to 4,620,573
_4107
PfGW456L13_4108 - CrfX protein, at 4,620,576 to 4,620,824
_4108
PfGW456L13_4109 - Magnesium and cobalt transport protein CorA, at 4,620,887 to 4,621,882
_4109
Position (kb) 4619
4620
4621 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4619.043 kb on - strand at 4619.049 kb on - strand at 4619.049 kb on - strand at 4619.628 kb on - strand at 4619.728 kb on - strand at 4619.728 kb on - strand at 4619.728 kb on - strand at 4619.728 kb on - strand at 4619.728 kb on - strand at 4619.728 kb on - strand at 4619.728 kb on - strand at 4619.913 kb on - strand, within PfGW456L13_4107 at 4619.913 kb on - strand, within PfGW456L13_4107 at 4620.110 kb on + strand, within PfGW456L13_4107 at 4620.111 kb on - strand, within PfGW456L13_4107 at 4620.111 kb on - strand, within PfGW456L13_4107 at 4620.111 kb on - strand, within PfGW456L13_4107 at 4620.111 kb on - strand, within PfGW456L13_4107 at 4620.111 kb on - strand, within PfGW456L13_4107 at 4620.219 kb on - strand, within PfGW456L13_4107 at 4620.219 kb on - strand, within PfGW456L13_4107 at 4620.219 kb on - strand, within PfGW456L13_4107 at 4620.219 kb on - strand, within PfGW456L13_4107 at 4620.219 kb on - strand, within PfGW456L13_4107 at 4620.219 kb on - strand, within PfGW456L13_4107 at 4620.337 kb on - strand, within PfGW456L13_4107 at 4620.337 kb on - strand, within PfGW456L13_4107 at 4620.573 kb on + strand at 4620.574 kb on - strand at 4620.588 kb on - strand at 4620.605 kb on + strand, within PfGW456L13_4108 at 4620.606 kb on - strand, within PfGW456L13_4108 at 4620.611 kb on + strand, within PfGW456L13_4108 at 4620.612 kb on - strand, within PfGW456L13_4108 at 4620.824 kb on + strand at 4621.068 kb on + strand, within PfGW456L13_4109 at 4621.068 kb on + strand, within PfGW456L13_4109 at 4621.069 kb on - strand, within PfGW456L13_4109 at 4621.069 kb on - strand, within PfGW456L13_4109 at 4621.330 kb on + strand, within PfGW456L13_4109 at 4621.330 kb on + strand, within PfGW456L13_4109 at 4621.330 kb on + strand, within PfGW456L13_4109 at 4621.331 kb on - strand, within PfGW456L13_4109 at 4621.333 kb on - strand, within PfGW456L13_4109 at 4621.419 kb on + strand, within PfGW456L13_4109 at 4621.419 kb on + strand, within PfGW456L13_4109 at 4621.420 kb on - strand, within PfGW456L13_4109 at 4621.420 kb on - strand, within PfGW456L13_4109 at 4621.420 kb on - strand, within PfGW456L13_4109 at 4621.420 kb on - strand, within PfGW456L13_4109
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,619,043 - +1.5 4,619,049 - +1.1 4,619,049 - -1.6 4,619,628 - -0.2 4,619,728 - +1.1 4,619,728 - -0.2 4,619,728 - -0.9 4,619,728 - +0.9 4,619,728 - -2.1 4,619,728 - +0.5 4,619,728 - -1.1 4,619,913 - PfGW456L13_4107 0.20 -3.1 4,619,913 - PfGW456L13_4107 0.20 +0.9 4,620,110 + PfGW456L13_4107 0.44 +2.1 4,620,111 - PfGW456L13_4107 0.44 -0.5 4,620,111 - PfGW456L13_4107 0.44 -1.5 4,620,111 - PfGW456L13_4107 0.44 -0.3 4,620,111 - PfGW456L13_4107 0.44 -0.1 4,620,111 - PfGW456L13_4107 0.44 +1.6 4,620,219 - PfGW456L13_4107 0.57 -1.7 4,620,219 - PfGW456L13_4107 0.57 -1.2 4,620,219 - PfGW456L13_4107 0.57 +0.1 4,620,219 - PfGW456L13_4107 0.57 -0.7 4,620,219 - PfGW456L13_4107 0.57 -0.3 4,620,219 - PfGW456L13_4107 0.57 -1.2 4,620,337 - PfGW456L13_4107 0.71 -1.3 4,620,337 - PfGW456L13_4107 0.71 +1.3 4,620,573 + -0.5 4,620,574 - +0.0 4,620,588 - -0.5 4,620,605 + PfGW456L13_4108 0.12 -0.7 4,620,606 - PfGW456L13_4108 0.12 -0.2 4,620,611 + PfGW456L13_4108 0.14 -1.2 4,620,612 - PfGW456L13_4108 0.14 -0.2 4,620,824 + +0.5 4,621,068 + PfGW456L13_4109 0.18 -1.1 4,621,068 + PfGW456L13_4109 0.18 +0.5 4,621,069 - PfGW456L13_4109 0.18 +0.7 4,621,069 - PfGW456L13_4109 0.18 +0.5 4,621,330 + PfGW456L13_4109 0.44 -0.3 4,621,330 + PfGW456L13_4109 0.44 -0.2 4,621,330 + PfGW456L13_4109 0.44 -2.2 4,621,331 - PfGW456L13_4109 0.45 -0.8 4,621,333 - PfGW456L13_4109 0.45 -0.9 4,621,419 + PfGW456L13_4109 0.53 -0.9 4,621,419 + PfGW456L13_4109 0.53 +0.5 4,621,420 - PfGW456L13_4109 0.54 -0.3 4,621,420 - PfGW456L13_4109 0.54 -0.4 4,621,420 - PfGW456L13_4109 0.54 -1.5 4,621,420 - PfGW456L13_4109 0.54 -0.5
Or see this region's nucleotide sequence