Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_3985 and PfGW456L13_3986 overlap by 20 nucleotides PfGW456L13_3986 and PfGW456L13_3987 are separated by 218 nucleotides
PfGW456L13_3985 - hypothetical protein, at 4,470,217 to 4,471,860
_3985
PfGW456L13_3986 - Shufflon-specific DNA recombinase, at 4,471,841 to 4,472,137
_3986
PfGW456L13_3987 - tRNA dihydrouridine synthase A, at 4,472,356 to 4,473,249
_3987
Position (kb) 4471
4472
4473 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4470.904 kb on + strand, within PfGW456L13_3985 at 4470.904 kb on + strand, within PfGW456L13_3985 at 4471.022 kb on - strand, within PfGW456L13_3985 at 4471.058 kb on + strand, within PfGW456L13_3985 at 4471.059 kb on - strand at 4471.071 kb on + strand, within PfGW456L13_3985 at 4471.132 kb on + strand, within PfGW456L13_3985 at 4471.151 kb on - strand, within PfGW456L13_3985 at 4471.190 kb on + strand, within PfGW456L13_3985 at 4471.202 kb on + strand, within PfGW456L13_3985 at 4471.313 kb on - strand, within PfGW456L13_3985 at 4471.313 kb on - strand, within PfGW456L13_3985 at 4471.397 kb on + strand, within PfGW456L13_3985 at 4471.398 kb on - strand, within PfGW456L13_3985 at 4471.437 kb on + strand, within PfGW456L13_3985 at 4471.437 kb on + strand, within PfGW456L13_3985 at 4471.438 kb on - strand, within PfGW456L13_3985 at 4471.438 kb on - strand, within PfGW456L13_3985 at 4471.460 kb on + strand, within PfGW456L13_3985 at 4471.461 kb on - strand, within PfGW456L13_3985 at 4471.461 kb on - strand, within PfGW456L13_3985 at 4471.597 kb on - strand, within PfGW456L13_3985 at 4471.597 kb on - strand, within PfGW456L13_3985 at 4471.597 kb on - strand, within PfGW456L13_3985 at 4471.625 kb on + strand, within PfGW456L13_3985 at 4471.626 kb on - strand, within PfGW456L13_3985 at 4471.642 kb on + strand, within PfGW456L13_3985 at 4471.642 kb on + strand, within PfGW456L13_3985 at 4471.642 kb on + strand, within PfGW456L13_3985 at 4471.642 kb on + strand, within PfGW456L13_3985 at 4471.642 kb on + strand, within PfGW456L13_3985 at 4471.643 kb on - strand, within PfGW456L13_3985 at 4471.643 kb on - strand, within PfGW456L13_3985 at 4471.643 kb on - strand, within PfGW456L13_3985 at 4471.684 kb on + strand, within PfGW456L13_3985 at 4471.684 kb on + strand, within PfGW456L13_3985 at 4471.684 kb on + strand, within PfGW456L13_3985 at 4471.684 kb on + strand, within PfGW456L13_3985 at 4471.684 kb on + strand, within PfGW456L13_3985 at 4471.684 kb on + strand, within PfGW456L13_3985 at 4471.684 kb on + strand, within PfGW456L13_3985 at 4471.684 kb on + strand, within PfGW456L13_3985 at 4471.684 kb on + strand, within PfGW456L13_3985 at 4471.684 kb on + strand, within PfGW456L13_3985 at 4471.684 kb on + strand, within PfGW456L13_3985 at 4471.684 kb on + strand, within PfGW456L13_3985 at 4471.684 kb on + strand, within PfGW456L13_3985 at 4471.684 kb on + strand, within PfGW456L13_3985 at 4471.684 kb on + strand, within PfGW456L13_3985 at 4471.684 kb on + strand, within PfGW456L13_3985 at 4471.685 kb on - strand, within PfGW456L13_3985 at 4471.685 kb on - strand, within PfGW456L13_3985 at 4471.685 kb on - strand, within PfGW456L13_3985 at 4471.685 kb on - strand, within PfGW456L13_3985 at 4471.685 kb on - strand, within PfGW456L13_3985 at 4471.685 kb on - strand, within PfGW456L13_3985 at 4471.685 kb on - strand, within PfGW456L13_3985 at 4471.685 kb on - strand, within PfGW456L13_3985 at 4471.685 kb on - strand, within PfGW456L13_3985 at 4471.756 kb on - strand at 4471.862 kb on + strand at 4471.877 kb on + strand, within PfGW456L13_3986 at 4471.877 kb on + strand, within PfGW456L13_3986 at 4472.059 kb on + strand, within PfGW456L13_3986 at 4472.059 kb on + strand, within PfGW456L13_3986 at 4472.059 kb on + strand, within PfGW456L13_3986 at 4472.060 kb on - strand, within PfGW456L13_3986 at 4472.092 kb on - strand, within PfGW456L13_3986 at 4472.092 kb on - strand, within PfGW456L13_3986 at 4472.092 kb on - strand, within PfGW456L13_3986 at 4472.092 kb on - strand, within PfGW456L13_3986 at 4472.148 kb on - strand at 4472.168 kb on + strand at 4472.168 kb on + strand at 4472.168 kb on + strand at 4472.168 kb on + strand at 4472.168 kb on + strand at 4472.168 kb on + strand at 4472.168 kb on + strand at 4472.168 kb on + strand at 4472.168 kb on + strand at 4472.168 kb on + strand at 4472.168 kb on + strand at 4472.168 kb on + strand at 4472.169 kb on - strand at 4472.169 kb on - strand at 4472.169 kb on - strand at 4472.169 kb on - strand at 4472.169 kb on - strand at 4472.169 kb on - strand at 4472.169 kb on - strand at 4472.169 kb on - strand at 4472.169 kb on - strand at 4472.172 kb on + strand at 4472.172 kb on + strand at 4472.172 kb on + strand at 4472.172 kb on + strand at 4472.172 kb on + strand at 4472.172 kb on + strand at 4472.172 kb on + strand at 4472.172 kb on + strand at 4472.172 kb on + strand at 4472.172 kb on + strand at 4472.172 kb on + strand at 4472.172 kb on + strand at 4472.172 kb on + strand at 4472.172 kb on + strand at 4472.172 kb on + strand at 4472.173 kb on - strand at 4472.173 kb on - strand at 4472.173 kb on - strand at 4472.173 kb on - strand at 4472.173 kb on - strand at 4472.173 kb on - strand at 4472.173 kb on - strand at 4472.173 kb on - strand at 4472.173 kb on - strand at 4472.173 kb on - strand at 4472.173 kb on - strand at 4472.173 kb on - strand at 4472.173 kb on - strand at 4472.173 kb on - strand at 4472.192 kb on + strand at 4472.193 kb on - strand at 4472.196 kb on - strand at 4472.212 kb on - strand at 4472.232 kb on + strand at 4472.232 kb on + strand at 4472.233 kb on - strand at 4472.233 kb on - strand at 4472.233 kb on - strand at 4472.233 kb on - strand at 4472.236 kb on + strand at 4472.236 kb on + strand at 4472.236 kb on + strand at 4472.236 kb on + strand at 4472.237 kb on - strand at 4472.237 kb on - strand at 4472.237 kb on - strand at 4472.237 kb on - strand at 4472.328 kb on + strand at 4472.329 kb on - strand at 4472.354 kb on + strand at 4472.355 kb on - strand at 4472.355 kb on - strand at 4472.355 kb on - strand at 4472.377 kb on + strand at 4472.378 kb on - strand at 4472.378 kb on - strand at 4472.531 kb on - strand, within PfGW456L13_3987 at 4472.583 kb on + strand, within PfGW456L13_3987 at 4472.583 kb on + strand, within PfGW456L13_3987 at 4472.583 kb on + strand, within PfGW456L13_3987 at 4472.583 kb on + strand, within PfGW456L13_3987 at 4472.584 kb on - strand, within PfGW456L13_3987 at 4472.584 kb on - strand, within PfGW456L13_3987 at 4472.584 kb on - strand, within PfGW456L13_3987 at 4472.707 kb on + strand, within PfGW456L13_3987 at 4472.707 kb on + strand, within PfGW456L13_3987 at 4472.763 kb on + strand, within PfGW456L13_3987 at 4472.764 kb on - strand, within PfGW456L13_3987 at 4472.836 kb on + strand, within PfGW456L13_3987 at 4472.836 kb on + strand, within PfGW456L13_3987 at 4472.883 kb on + strand, within PfGW456L13_3987 at 4472.883 kb on + strand, within PfGW456L13_3987 at 4472.968 kb on + strand, within PfGW456L13_3987 at 4472.969 kb on - strand, within PfGW456L13_3987 at 4472.969 kb on - strand, within PfGW456L13_3987 at 4472.980 kb on + strand, within PfGW456L13_3987 at 4472.980 kb on + strand, within PfGW456L13_3987 at 4472.980 kb on + strand, within PfGW456L13_3987 at 4472.980 kb on + strand, within PfGW456L13_3987 at 4472.980 kb on + strand, within PfGW456L13_3987 at 4472.981 kb on - strand, within PfGW456L13_3987 at 4472.981 kb on - strand, within PfGW456L13_3987 at 4473.067 kb on + strand, within PfGW456L13_3987 at 4473.067 kb on + strand, within PfGW456L13_3987 at 4473.067 kb on + strand, within PfGW456L13_3987 at 4473.067 kb on + strand, within PfGW456L13_3987 at 4473.067 kb on + strand, within PfGW456L13_3987 at 4473.067 kb on + strand, within PfGW456L13_3987 at 4473.067 kb on + strand, within PfGW456L13_3987 at 4473.067 kb on + strand, within PfGW456L13_3987 at 4473.067 kb on + strand, within PfGW456L13_3987 at 4473.067 kb on + strand, within PfGW456L13_3987 at 4473.067 kb on + strand, within PfGW456L13_3987 at 4473.067 kb on + strand, within PfGW456L13_3987 at 4473.067 kb on + strand at 4473.068 kb on - strand, within PfGW456L13_3987 at 4473.068 kb on - strand, within PfGW456L13_3987 at 4473.068 kb on - strand, within PfGW456L13_3987 at 4473.068 kb on - strand, within PfGW456L13_3987 at 4473.068 kb on - strand, within PfGW456L13_3987 at 4473.068 kb on - strand, within PfGW456L13_3987 at 4473.068 kb on - strand, within PfGW456L13_3987 at 4473.068 kb on - strand, within PfGW456L13_3987 at 4473.069 kb on + strand, within PfGW456L13_3987 at 4473.069 kb on + strand, within PfGW456L13_3987 at 4473.069 kb on + strand, within PfGW456L13_3987 at 4473.069 kb on + strand, within PfGW456L13_3987 at 4473.069 kb on + strand, within PfGW456L13_3987 at 4473.069 kb on + strand, within PfGW456L13_3987 at 4473.069 kb on + strand, within PfGW456L13_3987 at 4473.069 kb on + strand, within PfGW456L13_3987 at 4473.069 kb on + strand, within PfGW456L13_3987 at 4473.069 kb on + strand, within PfGW456L13_3987 at 4473.069 kb on + strand, within PfGW456L13_3987 at 4473.069 kb on + strand, within PfGW456L13_3987 at 4473.069 kb on + strand, within PfGW456L13_3987 at 4473.070 kb on - strand, within PfGW456L13_3987 at 4473.070 kb on - strand, within PfGW456L13_3987 at 4473.070 kb on - strand, within PfGW456L13_3987 at 4473.070 kb on - strand, within PfGW456L13_3987 at 4473.070 kb on - strand, within PfGW456L13_3987 at 4473.070 kb on - strand, within PfGW456L13_3987 at 4473.070 kb on - strand, within PfGW456L13_3987 at 4473.070 kb on - strand at 4473.070 kb on - strand, within PfGW456L13_3987 at 4473.070 kb on - strand, within PfGW456L13_3987 at 4473.070 kb on - strand, within PfGW456L13_3987 at 4473.070 kb on - strand, within PfGW456L13_3987 at 4473.071 kb on + strand, within PfGW456L13_3987 at 4473.071 kb on + strand, within PfGW456L13_3987 at 4473.072 kb on - strand, within PfGW456L13_3987
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,470,904 + PfGW456L13_3985 0.42 +0.0 4,470,904 + PfGW456L13_3985 0.42 -0.1 4,471,022 - PfGW456L13_3985 0.49 -0.1 4,471,058 + PfGW456L13_3985 0.51 -0.6 4,471,059 - -0.4 4,471,071 + PfGW456L13_3985 0.52 -1.1 4,471,132 + PfGW456L13_3985 0.56 +0.2 4,471,151 - PfGW456L13_3985 0.57 +1.6 4,471,190 + PfGW456L13_3985 0.59 +0.6 4,471,202 + PfGW456L13_3985 0.60 +0.3 4,471,313 - PfGW456L13_3985 0.67 -1.6 4,471,313 - PfGW456L13_3985 0.67 +0.0 4,471,397 + PfGW456L13_3985 0.72 +0.4 4,471,398 - PfGW456L13_3985 0.72 +0.6 4,471,437 + PfGW456L13_3985 0.74 +1.9 4,471,437 + PfGW456L13_3985 0.74 +0.0 4,471,438 - PfGW456L13_3985 0.74 +0.3 4,471,438 - PfGW456L13_3985 0.74 +0.5 4,471,460 + PfGW456L13_3985 0.76 -0.7 4,471,461 - PfGW456L13_3985 0.76 +1.2 4,471,461 - PfGW456L13_3985 0.76 -0.3 4,471,597 - PfGW456L13_3985 0.84 +0.4 4,471,597 - PfGW456L13_3985 0.84 +1.9 4,471,597 - PfGW456L13_3985 0.84 +0.6 4,471,625 + PfGW456L13_3985 0.86 -0.7 4,471,626 - PfGW456L13_3985 0.86 +0.4 4,471,642 + PfGW456L13_3985 0.87 -0.5 4,471,642 + PfGW456L13_3985 0.87 -0.9 4,471,642 + PfGW456L13_3985 0.87 +0.4 4,471,642 + PfGW456L13_3985 0.87 +1.3 4,471,642 + PfGW456L13_3985 0.87 +1.5 4,471,643 - PfGW456L13_3985 0.87 -1.0 4,471,643 - PfGW456L13_3985 0.87 -0.5 4,471,643 - PfGW456L13_3985 0.87 +0.7 4,471,684 + PfGW456L13_3985 0.89 -1.8 4,471,684 + PfGW456L13_3985 0.89 -0.3 4,471,684 + PfGW456L13_3985 0.89 +0.7 4,471,684 + PfGW456L13_3985 0.89 +0.2 4,471,684 + PfGW456L13_3985 0.89 -0.7 4,471,684 + PfGW456L13_3985 0.89 +1.5 4,471,684 + PfGW456L13_3985 0.89 -1.1 4,471,684 + PfGW456L13_3985 0.89 -0.7 4,471,684 + PfGW456L13_3985 0.89 -0.3 4,471,684 + PfGW456L13_3985 0.89 +0.2 4,471,684 + PfGW456L13_3985 0.89 +0.6 4,471,684 + PfGW456L13_3985 0.89 -0.7 4,471,684 + PfGW456L13_3985 0.89 -0.2 4,471,684 + PfGW456L13_3985 0.89 +2.5 4,471,684 + PfGW456L13_3985 0.89 -0.8 4,471,684 + PfGW456L13_3985 0.89 +2.2 4,471,685 - PfGW456L13_3985 0.89 +2.5 4,471,685 - PfGW456L13_3985 0.89 -0.2 4,471,685 - PfGW456L13_3985 0.89 +1.9 4,471,685 - PfGW456L13_3985 0.89 -0.4 4,471,685 - PfGW456L13_3985 0.89 +0.5 4,471,685 - PfGW456L13_3985 0.89 -1.0 4,471,685 - PfGW456L13_3985 0.89 -1.1 4,471,685 - PfGW456L13_3985 0.89 -0.4 4,471,685 - PfGW456L13_3985 0.89 -0.5 4,471,756 - +0.0 4,471,862 + +1.0 4,471,877 + PfGW456L13_3986 0.12 +0.3 4,471,877 + PfGW456L13_3986 0.12 +1.0 4,472,059 + PfGW456L13_3986 0.73 +0.9 4,472,059 + PfGW456L13_3986 0.73 -1.0 4,472,059 + PfGW456L13_3986 0.73 -0.8 4,472,060 - PfGW456L13_3986 0.74 -0.8 4,472,092 - PfGW456L13_3986 0.85 -1.4 4,472,092 - PfGW456L13_3986 0.85 -0.9 4,472,092 - PfGW456L13_3986 0.85 -2.0 4,472,092 - PfGW456L13_3986 0.85 -2.0 4,472,148 - -0.6 4,472,168 + +0.2 4,472,168 + +1.3 4,472,168 + +0.1 4,472,168 + -0.8 4,472,168 + -0.1 4,472,168 + +0.0 4,472,168 + +0.9 4,472,168 + -1.5 4,472,168 + +0.7 4,472,168 + -0.7 4,472,168 + -0.6 4,472,168 + -0.3 4,472,169 - -0.2 4,472,169 - -1.0 4,472,169 - -1.7 4,472,169 - -0.5 4,472,169 - -0.2 4,472,169 - -0.4 4,472,169 - +0.5 4,472,169 - +1.5 4,472,169 - -0.3 4,472,172 + +1.9 4,472,172 + +0.7 4,472,172 + -0.5 4,472,172 + -0.3 4,472,172 + +0.5 4,472,172 + -0.5 4,472,172 + -0.3 4,472,172 + -0.3 4,472,172 + -0.9 4,472,172 + -0.7 4,472,172 + +1.1 4,472,172 + -0.8 4,472,172 + -0.4 4,472,172 + -1.0 4,472,172 + -1.8 4,472,173 - +2.8 4,472,173 - -0.0 4,472,173 - +0.4 4,472,173 - -0.1 4,472,173 - -0.8 4,472,173 - -0.1 4,472,173 - -0.7 4,472,173 - -0.7 4,472,173 - -0.8 4,472,173 - +1.0 4,472,173 - -2.0 4,472,173 - +0.1 4,472,173 - +1.3 4,472,173 - -0.4 4,472,192 + +0.9 4,472,193 - -1.0 4,472,196 - +0.6 4,472,212 - +0.6 4,472,232 + -0.0 4,472,232 + -0.5 4,472,233 - -0.8 4,472,233 - -0.3 4,472,233 - +0.3 4,472,233 - -0.3 4,472,236 + -0.4 4,472,236 + +0.2 4,472,236 + -0.4 4,472,236 + -0.1 4,472,237 - +1.2 4,472,237 - +1.0 4,472,237 - -1.0 4,472,237 - -0.3 4,472,328 + -0.6 4,472,329 - +1.5 4,472,354 + -1.2 4,472,355 - -0.5 4,472,355 - -1.6 4,472,355 - -0.4 4,472,377 + +0.3 4,472,378 - -0.1 4,472,378 - -0.1 4,472,531 - PfGW456L13_3987 0.20 -0.6 4,472,583 + PfGW456L13_3987 0.25 -1.0 4,472,583 + PfGW456L13_3987 0.25 -1.3 4,472,583 + PfGW456L13_3987 0.25 +0.2 4,472,583 + PfGW456L13_3987 0.25 +0.6 4,472,584 - PfGW456L13_3987 0.26 -1.5 4,472,584 - PfGW456L13_3987 0.26 -0.6 4,472,584 - PfGW456L13_3987 0.26 +0.2 4,472,707 + PfGW456L13_3987 0.39 +0.3 4,472,707 + PfGW456L13_3987 0.39 +1.2 4,472,763 + PfGW456L13_3987 0.46 +0.9 4,472,764 - PfGW456L13_3987 0.46 -1.0 4,472,836 + PfGW456L13_3987 0.54 +1.2 4,472,836 + PfGW456L13_3987 0.54 -0.5 4,472,883 + PfGW456L13_3987 0.59 -0.5 4,472,883 + PfGW456L13_3987 0.59 -0.2 4,472,968 + PfGW456L13_3987 0.68 +0.3 4,472,969 - PfGW456L13_3987 0.69 +0.0 4,472,969 - PfGW456L13_3987 0.69 +0.1 4,472,980 + PfGW456L13_3987 0.70 -0.2 4,472,980 + PfGW456L13_3987 0.70 -0.2 4,472,980 + PfGW456L13_3987 0.70 -0.6 4,472,980 + PfGW456L13_3987 0.70 +0.1 4,472,980 + PfGW456L13_3987 0.70 -0.3 4,472,981 - PfGW456L13_3987 0.70 -2.0 4,472,981 - PfGW456L13_3987 0.70 -1.2 4,473,067 + PfGW456L13_3987 0.80 -0.3 4,473,067 + PfGW456L13_3987 0.80 +0.1 4,473,067 + PfGW456L13_3987 0.80 -0.1 4,473,067 + PfGW456L13_3987 0.80 +0.5 4,473,067 + PfGW456L13_3987 0.80 +0.6 4,473,067 + PfGW456L13_3987 0.80 -2.3 4,473,067 + PfGW456L13_3987 0.80 -0.9 4,473,067 + PfGW456L13_3987 0.80 +2.4 4,473,067 + PfGW456L13_3987 0.80 +0.1 4,473,067 + PfGW456L13_3987 0.80 +0.5 4,473,067 + PfGW456L13_3987 0.80 +0.4 4,473,067 + PfGW456L13_3987 0.80 -0.4 4,473,067 + +1.5 4,473,068 - PfGW456L13_3987 0.80 -0.7 4,473,068 - PfGW456L13_3987 0.80 +0.5 4,473,068 - PfGW456L13_3987 0.80 -1.3 4,473,068 - PfGW456L13_3987 0.80 -2.1 4,473,068 - PfGW456L13_3987 0.80 -1.3 4,473,068 - PfGW456L13_3987 0.80 -0.3 4,473,068 - PfGW456L13_3987 0.80 +0.2 4,473,068 - PfGW456L13_3987 0.80 +0.4 4,473,069 + PfGW456L13_3987 0.80 -1.8 4,473,069 + PfGW456L13_3987 0.80 +0.7 4,473,069 + PfGW456L13_3987 0.80 -0.7 4,473,069 + PfGW456L13_3987 0.80 +1.0 4,473,069 + PfGW456L13_3987 0.80 -0.3 4,473,069 + PfGW456L13_3987 0.80 +1.8 4,473,069 + PfGW456L13_3987 0.80 +0.5 4,473,069 + PfGW456L13_3987 0.80 -1.1 4,473,069 + PfGW456L13_3987 0.80 +0.9 4,473,069 + PfGW456L13_3987 0.80 +2.0 4,473,069 + PfGW456L13_3987 0.80 +0.4 4,473,069 + PfGW456L13_3987 0.80 +0.3 4,473,069 + PfGW456L13_3987 0.80 -0.9 4,473,070 - PfGW456L13_3987 0.80 +1.2 4,473,070 - PfGW456L13_3987 0.80 -0.1 4,473,070 - PfGW456L13_3987 0.80 +0.4 4,473,070 - PfGW456L13_3987 0.80 -0.2 4,473,070 - PfGW456L13_3987 0.80 -1.1 4,473,070 - PfGW456L13_3987 0.80 +0.8 4,473,070 - PfGW456L13_3987 0.80 +0.4 4,473,070 - +1.2 4,473,070 - PfGW456L13_3987 0.80 -0.2 4,473,070 - PfGW456L13_3987 0.80 -0.2 4,473,070 - PfGW456L13_3987 0.80 +1.0 4,473,070 - PfGW456L13_3987 0.80 -0.1 4,473,071 + PfGW456L13_3987 0.80 +0.1 4,473,071 + PfGW456L13_3987 0.80 +0.7 4,473,072 - PfGW456L13_3987 0.80 -0.8
Or see this region's nucleotide sequence