Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_213

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_212 and PfGW456L13_213 are separated by 216 nucleotidesPfGW456L13_213 and PfGW456L13_214 are separated by 383 nucleotides PfGW456L13_212 - ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-), at 242,016 to 243,050 _212 PfGW456L13_213 - Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42), at 243,267 to 246,206 _213 PfGW456L13_214 - Pyruvate dehydrogenase E1 component (EC 1.2.4.1), at 246,590 to 249,235 _214 Position (kb) 243 244 245 246 247Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 243.081 kb on - strandat 243.081 kb on - strandat 243.081 kb on - strandat 243.081 kb on - strandat 243.081 kb on - strandat 243.081 kb on - strandat 243.105 kb on - strandat 243.123 kb on - strandat 243.128 kb on - strandat 243.234 kb on + strandat 243.235 kb on - strandat 243.244 kb on - strandat 243.244 kb on - strandat 243.251 kb on + strandat 243.259 kb on - strandat 243.385 kb on + strandat 243.386 kb on - strandat 243.392 kb on + strandat 243.392 kb on + strandat 243.393 kb on - strandat 243.393 kb on - strandat 243.393 kb on - strandat 243.393 kb on - strandat 243.394 kb on + strandat 243.394 kb on + strandat 243.395 kb on - strandat 243.395 kb on - strandat 243.395 kb on - strandat 243.484 kb on - strandat 243.523 kb on + strandat 243.523 kb on + strandat 243.533 kb on + strandat 243.533 kb on + strandat 243.534 kb on - strandat 243.534 kb on - strandat 243.534 kb on - strandat 243.534 kb on - strandat 243.552 kb on - strandat 243.552 kb on - strandat 243.704 kb on + strand, within PfGW456L13_213at 243.704 kb on + strand, within PfGW456L13_213at 243.705 kb on - strand, within PfGW456L13_213at 243.820 kb on + strand, within PfGW456L13_213at 243.895 kb on + strand, within PfGW456L13_213at 243.895 kb on + strand, within PfGW456L13_213at 243.895 kb on + strand, within PfGW456L13_213at 243.895 kb on + strand, within PfGW456L13_213at 243.895 kb on + strand, within PfGW456L13_213at 243.895 kb on + strand, within PfGW456L13_213at 243.895 kb on + strand, within PfGW456L13_213at 243.895 kb on + strand, within PfGW456L13_213at 243.895 kb on + strand, within PfGW456L13_213at 243.895 kb on + strand, within PfGW456L13_213at 243.895 kb on + strand, within PfGW456L13_213at 243.895 kb on + strand, within PfGW456L13_213at 243.896 kb on - strand, within PfGW456L13_213at 243.896 kb on - strand, within PfGW456L13_213at 243.896 kb on - strand, within PfGW456L13_213at 243.896 kb on - strand, within PfGW456L13_213at 243.896 kb on - strand, within PfGW456L13_213at 243.896 kb on - strand, within PfGW456L13_213at 243.896 kb on - strand, within PfGW456L13_213at 243.896 kb on - strand, within PfGW456L13_213at 243.896 kb on - strand, within PfGW456L13_213at 244.027 kb on - strand, within PfGW456L13_213at 244.027 kb on - strand, within PfGW456L13_213at 244.027 kb on - strand, within PfGW456L13_213at 244.138 kb on + strand, within PfGW456L13_213at 244.138 kb on + strand, within PfGW456L13_213at 244.139 kb on - strand, within PfGW456L13_213at 244.210 kb on + strand, within PfGW456L13_213at 244.211 kb on - strand, within PfGW456L13_213at 244.350 kb on + strand, within PfGW456L13_213at 244.350 kb on + strand, within PfGW456L13_213at 244.350 kb on + strand, within PfGW456L13_213at 244.351 kb on - strand, within PfGW456L13_213at 244.351 kb on - strand, within PfGW456L13_213at 244.351 kb on - strand, within PfGW456L13_213at 244.351 kb on - strand, within PfGW456L13_213at 244.351 kb on - strand, within PfGW456L13_213at 244.522 kb on + strand, within PfGW456L13_213at 244.573 kb on - strand, within PfGW456L13_213at 244.622 kb on + strand, within PfGW456L13_213at 244.622 kb on + strand, within PfGW456L13_213at 244.885 kb on + strand, within PfGW456L13_213at 244.885 kb on + strand, within PfGW456L13_213at 244.885 kb on + strand, within PfGW456L13_213at 244.885 kb on + strand, within PfGW456L13_213at 244.885 kb on + strand, within PfGW456L13_213at 244.886 kb on - strand, within PfGW456L13_213at 244.886 kb on - strand, within PfGW456L13_213at 244.886 kb on - strand, within PfGW456L13_213at 244.931 kb on + strand, within PfGW456L13_213at 244.931 kb on + strand, within PfGW456L13_213at 244.931 kb on + strand, within PfGW456L13_213at 244.931 kb on + strand, within PfGW456L13_213at 244.931 kb on + strand, within PfGW456L13_213at 244.931 kb on + strand, within PfGW456L13_213at 244.932 kb on - strand, within PfGW456L13_213at 244.932 kb on - strand, within PfGW456L13_213at 244.932 kb on - strand, within PfGW456L13_213at 244.932 kb on - strand, within PfGW456L13_213at 244.932 kb on - strand, within PfGW456L13_213at 244.932 kb on - strand, within PfGW456L13_213at 244.932 kb on - strand, within PfGW456L13_213at 244.932 kb on - strand, within PfGW456L13_213at 244.932 kb on - strandat 244.932 kb on - strand, within PfGW456L13_213at 245.017 kb on + strand, within PfGW456L13_213at 245.017 kb on + strand, within PfGW456L13_213at 245.018 kb on - strand, within PfGW456L13_213at 245.018 kb on - strand, within PfGW456L13_213at 245.071 kb on + strand, within PfGW456L13_213at 245.071 kb on + strand, within PfGW456L13_213at 245.097 kb on + strand, within PfGW456L13_213at 245.097 kb on + strand, within PfGW456L13_213at 245.103 kb on + strand, within PfGW456L13_213at 245.103 kb on + strand, within PfGW456L13_213at 245.104 kb on - strand, within PfGW456L13_213at 245.106 kb on + strand, within PfGW456L13_213at 245.106 kb on + strand, within PfGW456L13_213at 245.106 kb on + strand, within PfGW456L13_213at 245.107 kb on - strand, within PfGW456L13_213at 245.107 kb on - strand, within PfGW456L13_213at 245.107 kb on - strand, within PfGW456L13_213at 245.107 kb on - strand, within PfGW456L13_213at 245.294 kb on - strand, within PfGW456L13_213at 245.343 kb on + strand, within PfGW456L13_213at 245.384 kb on - strand, within PfGW456L13_213at 245.384 kb on - strand, within PfGW456L13_213at 245.413 kb on + strand, within PfGW456L13_213at 245.413 kb on + strand, within PfGW456L13_213at 245.416 kb on + strand, within PfGW456L13_213at 245.416 kb on + strand, within PfGW456L13_213at 245.416 kb on + strand, within PfGW456L13_213at 245.416 kb on + strand, within PfGW456L13_213at 245.417 kb on - strand, within PfGW456L13_213at 245.417 kb on - strand, within PfGW456L13_213at 245.417 kb on - strand, within PfGW456L13_213at 245.417 kb on - strand, within PfGW456L13_213at 245.465 kb on - strand, within PfGW456L13_213at 245.493 kb on + strand, within PfGW456L13_213at 245.493 kb on + strand, within PfGW456L13_213at 245.493 kb on + strand, within PfGW456L13_213at 245.493 kb on + strand, within PfGW456L13_213at 245.493 kb on + strand, within PfGW456L13_213at 245.494 kb on - strand, within PfGW456L13_213at 245.494 kb on - strand, within PfGW456L13_213at 245.749 kb on + strand, within PfGW456L13_213at 245.749 kb on + strand, within PfGW456L13_213at 245.749 kb on + strand, within PfGW456L13_213at 245.749 kb on + strand, within PfGW456L13_213at 245.749 kb on + strand, within PfGW456L13_213at 245.749 kb on + strand, within PfGW456L13_213at 245.750 kb on - strand, within PfGW456L13_213at 245.750 kb on - strand, within PfGW456L13_213at 245.750 kb on - strand, within PfGW456L13_213at 245.750 kb on - strand, within PfGW456L13_213at 245.750 kb on - strand, within PfGW456L13_213at 245.750 kb on - strand, within PfGW456L13_213at 245.750 kb on - strand, within PfGW456L13_213at 245.750 kb on - strand, within PfGW456L13_213at 245.761 kb on + strand, within PfGW456L13_213at 245.761 kb on + strand, within PfGW456L13_213at 245.761 kb on + strand, within PfGW456L13_213at 245.761 kb on + strand, within PfGW456L13_213at 245.762 kb on - strand, within PfGW456L13_213at 246.211 kb on + strandat 246.211 kb on + strandat 246.263 kb on + strandat 246.367 kb on + strandat 246.430 kb on + strandat 246.430 kb on + strandat 246.430 kb on + strandat 246.430 kb on + strandat 246.430 kb on + strandat 246.430 kb on + strandat 246.430 kb on + strandat 246.430 kb on + strandat 246.432 kb on + strandat 246.432 kb on + strandat 246.432 kb on + strandat 246.432 kb on + strandat 246.434 kb on + strandat 246.434 kb on + strandat 246.435 kb on - strandat 246.439 kb on + strandat 246.439 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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243,081 - +1.6
243,081 - -0.2
243,081 - +0.3
243,081 - -1.1
243,081 - +0.0
243,081 - -0.9
243,105 - +0.1
243,123 - -2.0
243,128 - -0.6
243,234 + -1.9
243,235 - -1.4
243,244 - -1.1
243,244 - -0.9
243,251 + -0.6
243,259 - -1.0
243,385 + -0.9
243,386 - +0.3
243,392 + -0.7
243,392 + -0.7
243,393 - -1.1
243,393 - -0.5
243,393 - -2.0
243,393 - -1.1
243,394 + -0.8
243,394 + -1.4
243,395 - -1.0
243,395 - -1.1
243,395 - +1.9
243,484 - +0.8
243,523 + -0.8
243,523 + -2.4
243,533 + +1.2
243,533 + -3.5
243,534 - +0.9
243,534 - -0.9
243,534 - -3.4
243,534 - -0.9
243,552 - -0.7
243,552 - -0.7
243,704 + PfGW456L13_213 0.15 -0.7
243,704 + PfGW456L13_213 0.15 -0.2
243,705 - PfGW456L13_213 0.15 -0.4
243,820 + PfGW456L13_213 0.19 -1.1
243,895 + PfGW456L13_213 0.21 +0.5
243,895 + PfGW456L13_213 0.21 -1.7
243,895 + PfGW456L13_213 0.21 +0.9
243,895 + PfGW456L13_213 0.21 -0.7
243,895 + PfGW456L13_213 0.21 +0.3
243,895 + PfGW456L13_213 0.21 -1.1
243,895 + PfGW456L13_213 0.21 -2.6
243,895 + PfGW456L13_213 0.21 +0.3
243,895 + PfGW456L13_213 0.21 -1.9
243,895 + PfGW456L13_213 0.21 -1.5
243,895 + PfGW456L13_213 0.21 +0.1
243,895 + PfGW456L13_213 0.21 -0.4
243,896 - PfGW456L13_213 0.21 +2.2
243,896 - PfGW456L13_213 0.21 -1.4
243,896 - PfGW456L13_213 0.21 -0.0
243,896 - PfGW456L13_213 0.21 -1.4
243,896 - PfGW456L13_213 0.21 -1.7
243,896 - PfGW456L13_213 0.21 -1.8
243,896 - PfGW456L13_213 0.21 +1.5
243,896 - PfGW456L13_213 0.21 +0.2
243,896 - PfGW456L13_213 0.21 -0.6
244,027 - PfGW456L13_213 0.26 +0.1
244,027 - PfGW456L13_213 0.26 -1.9
244,027 - PfGW456L13_213 0.26 -1.2
244,138 + PfGW456L13_213 0.30 -0.2
244,138 + PfGW456L13_213 0.30 -0.0
244,139 - PfGW456L13_213 0.30 -4.2
244,210 + PfGW456L13_213 0.32 -0.1
244,211 - PfGW456L13_213 0.32 -1.7
244,350 + PfGW456L13_213 0.37 +0.5
244,350 + PfGW456L13_213 0.37 -0.3
244,350 + PfGW456L13_213 0.37 +0.9
244,351 - PfGW456L13_213 0.37 -2.4
244,351 - PfGW456L13_213 0.37 -0.2
244,351 - PfGW456L13_213 0.37 -1.9
244,351 - PfGW456L13_213 0.37 -1.0
244,351 - PfGW456L13_213 0.37 -1.0
244,522 + PfGW456L13_213 0.43 +0.7
244,573 - PfGW456L13_213 0.44 -1.7
244,622 + PfGW456L13_213 0.46 -1.0
244,622 + PfGW456L13_213 0.46 +1.9
244,885 + PfGW456L13_213 0.55 -0.1
244,885 + PfGW456L13_213 0.55 -1.8
244,885 + PfGW456L13_213 0.55 -1.1
244,885 + PfGW456L13_213 0.55 -1.4
244,885 + PfGW456L13_213 0.55 +1.9
244,886 - PfGW456L13_213 0.55 -0.5
244,886 - PfGW456L13_213 0.55 -1.6
244,886 - PfGW456L13_213 0.55 -1.2
244,931 + PfGW456L13_213 0.57 -1.7
244,931 + PfGW456L13_213 0.57 +0.4
244,931 + PfGW456L13_213 0.57 -2.0
244,931 + PfGW456L13_213 0.57 -2.3
244,931 + PfGW456L13_213 0.57 -1.5
244,931 + PfGW456L13_213 0.57 -1.9
244,932 - PfGW456L13_213 0.57 +0.6
244,932 - PfGW456L13_213 0.57 -0.3
244,932 - PfGW456L13_213 0.57 -0.8
244,932 - PfGW456L13_213 0.57 -0.3
244,932 - PfGW456L13_213 0.57 -1.7
244,932 - PfGW456L13_213 0.57 -2.9
244,932 - PfGW456L13_213 0.57 +0.6
244,932 - PfGW456L13_213 0.57 -1.9
244,932 - -0.7
244,932 - PfGW456L13_213 0.57 -2.4
245,017 + PfGW456L13_213 0.60 -1.2
245,017 + PfGW456L13_213 0.60 -0.7
245,018 - PfGW456L13_213 0.60 -0.7
245,018 - PfGW456L13_213 0.60 -0.5
245,071 + PfGW456L13_213 0.61 -0.1
245,071 + PfGW456L13_213 0.61 -0.8
245,097 + PfGW456L13_213 0.62 +0.7
245,097 + PfGW456L13_213 0.62 -2.0
245,103 + PfGW456L13_213 0.62 -1.9
245,103 + PfGW456L13_213 0.62 +1.9
245,104 - PfGW456L13_213 0.62 +0.9
245,106 + PfGW456L13_213 0.63 -0.7
245,106 + PfGW456L13_213 0.63 -1.2
245,106 + PfGW456L13_213 0.63 -1.9
245,107 - PfGW456L13_213 0.63 -0.4
245,107 - PfGW456L13_213 0.63 +0.0
245,107 - PfGW456L13_213 0.63 +0.7
245,107 - PfGW456L13_213 0.63 -0.4
245,294 - PfGW456L13_213 0.69 -1.2
245,343 + PfGW456L13_213 0.71 +0.3
245,384 - PfGW456L13_213 0.72 -0.4
245,384 - PfGW456L13_213 0.72 -0.1
245,413 + PfGW456L13_213 0.73 -0.8
245,413 + PfGW456L13_213 0.73 -0.6
245,416 + PfGW456L13_213 0.73 -1.5
245,416 + PfGW456L13_213 0.73 -1.3
245,416 + PfGW456L13_213 0.73 -1.1
245,416 + PfGW456L13_213 0.73 -0.5
245,417 - PfGW456L13_213 0.73 -1.5
245,417 - PfGW456L13_213 0.73 -1.2
245,417 - PfGW456L13_213 0.73 -0.8
245,417 - PfGW456L13_213 0.73 -0.7
245,465 - PfGW456L13_213 0.75 +1.0
245,493 + PfGW456L13_213 0.76 -1.3
245,493 + PfGW456L13_213 0.76 -1.8
245,493 + PfGW456L13_213 0.76 +0.5
245,493 + PfGW456L13_213 0.76 -1.7
245,493 + PfGW456L13_213 0.76 +0.1
245,494 - PfGW456L13_213 0.76 -0.6
245,494 - PfGW456L13_213 0.76 -0.8
245,749 + PfGW456L13_213 0.84 -1.5
245,749 + PfGW456L13_213 0.84 +0.2
245,749 + PfGW456L13_213 0.84 -1.4
245,749 + PfGW456L13_213 0.84 -3.2
245,749 + PfGW456L13_213 0.84 -1.2
245,749 + PfGW456L13_213 0.84 -1.4
245,750 - PfGW456L13_213 0.84 +0.4
245,750 - PfGW456L13_213 0.84 -0.6
245,750 - PfGW456L13_213 0.84 +1.2
245,750 - PfGW456L13_213 0.84 -1.0
245,750 - PfGW456L13_213 0.84 -1.0
245,750 - PfGW456L13_213 0.84 -1.2
245,750 - PfGW456L13_213 0.84 +0.2
245,750 - PfGW456L13_213 0.84 +1.2
245,761 + PfGW456L13_213 0.85 -2.8
245,761 + PfGW456L13_213 0.85 -1.9
245,761 + PfGW456L13_213 0.85 -1.8
245,761 + PfGW456L13_213 0.85 -2.1
245,762 - PfGW456L13_213 0.85 +0.6
246,211 + -0.1
246,211 + +0.0
246,263 + +0.7
246,367 + -0.8
246,430 + +1.0
246,430 + -1.5
246,430 + -0.3
246,430 + -0.8
246,430 + +0.6
246,430 + -0.7
246,430 + -0.6
246,430 + -0.6
246,432 + -0.6
246,432 + -0.1
246,432 + -1.3
246,432 + +1.5
246,434 + +1.0
246,434 + +1.0
246,435 - -0.9
246,439 + +0.7
246,439 + +2.9

Or see this region's nucleotide sequence