Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5330

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5328 and Pf1N1B4_5329 are separated by 219 nucleotidesPf1N1B4_5329 and Pf1N1B4_5330 are separated by 25 nucleotidesPf1N1B4_5330 and Pf1N1B4_5331 are separated by 356 nucleotidesPf1N1B4_5331 and Pf1N1B4_5332 are separated by 2 nucleotidesPf1N1B4_5332 and Pf1N1B4_5333 are separated by 11 nucleotides Pf1N1B4_5328 - hypothetical protein, at 76,949 to 77,134 _5328 Pf1N1B4_5329 - hypothetical protein, at 77,354 to 77,896 _5329 Pf1N1B4_5330 - hypothetical protein, at 77,922 to 78,233 _5330 Pf1N1B4_5331 - hypothetical protein, at 78,590 to 78,760 _5331 Pf1N1B4_5332 - hypothetical protein, at 78,763 to 78,957 _5332 Pf1N1B4_5333 - hypothetical protein, at 78,969 to 79,595 _5333 Position (kb) 77 78 79Strain fitness (log2 ratio) -2 -1 0 1 2at 76.946 kb on - strandat 76.950 kb on + strandat 76.950 kb on + strandat 76.950 kb on + strandat 76.951 kb on - strandat 76.951 kb on - strandat 76.954 kb on + strandat 76.954 kb on + strandat 76.955 kb on - strandat 76.955 kb on - strandat 77.161 kb on - strandat 77.161 kb on - strandat 77.161 kb on - strandat 77.161 kb on - strandat 77.204 kb on - strandat 77.249 kb on + strandat 77.249 kb on + strandat 77.254 kb on + strandat 77.255 kb on - strandat 77.255 kb on - strandat 77.336 kb on + strandat 77.336 kb on + strandat 77.337 kb on - strandat 77.362 kb on + strandat 77.371 kb on + strandat 77.410 kb on + strand, within Pf1N1B4_5329at 77.410 kb on + strand, within Pf1N1B4_5329at 77.410 kb on + strand, within Pf1N1B4_5329at 77.410 kb on + strand, within Pf1N1B4_5329at 77.411 kb on - strand, within Pf1N1B4_5329at 77.686 kb on + strand, within Pf1N1B4_5329at 77.752 kb on - strand, within Pf1N1B4_5329at 77.781 kb on + strand, within Pf1N1B4_5329at 77.781 kb on + strandat 77.782 kb on - strand, within Pf1N1B4_5329at 77.847 kb on + strandat 77.923 kb on + strandat 77.923 kb on + strandat 77.980 kb on + strand, within Pf1N1B4_5330at 78.022 kb on - strand, within Pf1N1B4_5330at 78.152 kb on + strandat 78.152 kb on + strand, within Pf1N1B4_5330at 78.153 kb on - strandat 78.313 kb on + strandat 78.313 kb on + strandat 78.313 kb on + strandat 78.313 kb on + strandat 78.314 kb on - strandat 78.336 kb on + strandat 78.336 kb on + strandat 78.336 kb on + strandat 78.336 kb on + strandat 78.351 kb on + strandat 78.351 kb on + strandat 78.351 kb on + strandat 78.352 kb on - strandat 78.352 kb on - strandat 78.392 kb on + strandat 78.392 kb on + strandat 78.425 kb on + strandat 78.425 kb on + strandat 78.426 kb on - strandat 78.426 kb on - strandat 78.474 kb on + strandat 78.474 kb on + strandat 78.475 kb on - strandat 78.475 kb on - strandat 78.475 kb on - strandat 78.475 kb on - strandat 78.475 kb on - strandat 78.597 kb on - strandat 78.597 kb on - strandat 78.597 kb on - strandat 78.729 kb on + strand, within Pf1N1B4_5331at 78.730 kb on - strand, within Pf1N1B4_5331at 78.730 kb on - strand, within Pf1N1B4_5331at 78.730 kb on - strand, within Pf1N1B4_5331at 78.739 kb on - strand, within Pf1N1B4_5331at 78.971 kb on - strandat 79.045 kb on + strand, within Pf1N1B4_5333at 79.045 kb on + strand, within Pf1N1B4_5333at 79.046 kb on - strand, within Pf1N1B4_5333at 79.046 kb on - strand, within Pf1N1B4_5333at 79.046 kb on - strand, within Pf1N1B4_5333at 79.106 kb on + strand, within Pf1N1B4_5333

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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76,946 - -0.3
76,950 + +0.2
76,950 + -0.1
76,950 + +0.4
76,951 - -0.4
76,951 - -1.0
76,954 + -0.8
76,954 + +2.0
76,955 - -2.5
76,955 - -0.2
77,161 - +0.7
77,161 - -0.0
77,161 - -1.7
77,161 - +0.3
77,204 - +0.2
77,249 + +0.8
77,249 + -2.0
77,254 + +0.5
77,255 - +0.3
77,255 - -0.9
77,336 + -0.2
77,336 + -1.0
77,337 - +0.7
77,362 + -0.7
77,371 + -0.1
77,410 + Pf1N1B4_5329 0.10 -0.8
77,410 + Pf1N1B4_5329 0.10 -0.0
77,410 + Pf1N1B4_5329 0.10 -0.6
77,410 + Pf1N1B4_5329 0.10 +0.0
77,411 - Pf1N1B4_5329 0.10 +1.4
77,686 + Pf1N1B4_5329 0.61 -0.9
77,752 - Pf1N1B4_5329 0.73 -0.2
77,781 + Pf1N1B4_5329 0.79 -0.9
77,781 + -1.5
77,782 - Pf1N1B4_5329 0.79 -0.7
77,847 + -0.5
77,923 + +0.0
77,923 + -0.4
77,980 + Pf1N1B4_5330 0.19 -0.8
78,022 - Pf1N1B4_5330 0.32 -2.2
78,152 + -1.8
78,152 + Pf1N1B4_5330 0.74 +0.1
78,153 - -0.2
78,313 + -0.3
78,313 + +0.8
78,313 + +0.1
78,313 + +0.2
78,314 - +1.0
78,336 + +0.8
78,336 + -0.9
78,336 + -0.1
78,336 + -1.3
78,351 + +0.8
78,351 + +0.5
78,351 + -0.5
78,352 - -0.4
78,352 - -1.0
78,392 + -1.2
78,392 + +0.8
78,425 + -1.5
78,425 + -0.2
78,426 - -0.8
78,426 - -0.4
78,474 + -0.4
78,474 + +0.5
78,475 - +0.4
78,475 - -0.3
78,475 - -0.8
78,475 - +0.1
78,475 - +0.2
78,597 - -0.6
78,597 - -0.8
78,597 - +0.6
78,729 + Pf1N1B4_5331 0.81 -0.7
78,730 - Pf1N1B4_5331 0.82 -1.1
78,730 - Pf1N1B4_5331 0.82 -0.9
78,730 - Pf1N1B4_5331 0.82 -0.2
78,739 - Pf1N1B4_5331 0.87 +0.4
78,971 - -2.0
79,045 + Pf1N1B4_5333 0.12 -0.9
79,045 + Pf1N1B4_5333 0.12 -0.4
79,046 - Pf1N1B4_5333 0.12 -0.9
79,046 - Pf1N1B4_5333 0.12 +0.8
79,046 - Pf1N1B4_5333 0.12 +0.7
79,106 + Pf1N1B4_5333 0.22 +0.5

Or see this region's nucleotide sequence