Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24215 and BWI76_RS24220 are separated by 98 nucleotides BWI76_RS24220 and BWI76_RS24225 are separated by 104 nucleotides BWI76_RS24225 and BWI76_RS24230 are separated by 181 nucleotides BWI76_RS24230 and BWI76_RS24235 are separated by 334 nucleotides
BWI76_RS24215: BWI76_RS24215 - LysR family transcriptional regulator, at 5,048,101 to 5,049,000
_RS24215
BWI76_RS24220: BWI76_RS24220 - short chain dehydrogenase, at 5,049,099 to 5,049,701
_RS24220
BWI76_RS24225: BWI76_RS24225 - hypothetical protein, at 5,049,806 to 5,050,144
_RS24225
BWI76_RS24230: BWI76_RS24230 - hypothetical protein, at 5,050,326 to 5,050,514
_RS24230
BWI76_RS24235: BWI76_RS24235 - Branched-chain-amino-acid transaminase (EC 2.6.1.42) <small>(from data)</small>, at 5,050,849 to 5,052,030
_RS24235
Position (kb) 5049
5050
5051 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5048.872 kb on - strand, within BWI76_RS24215 at 5049.017 kb on - strand at 5049.040 kb on + strand at 5049.154 kb on + strand at 5049.378 kb on + strand, within BWI76_RS24220 at 5049.477 kb on + strand, within BWI76_RS24220 at 5049.549 kb on - strand, within BWI76_RS24220 at 5049.636 kb on + strand, within BWI76_RS24220 at 5049.636 kb on + strand, within BWI76_RS24220 at 5049.639 kb on - strand, within BWI76_RS24220 at 5049.644 kb on - strand at 5049.655 kb on + strand at 5049.853 kb on - strand, within BWI76_RS24225 at 5050.011 kb on - strand, within BWI76_RS24225 at 5050.105 kb on - strand, within BWI76_RS24225 at 5050.107 kb on + strand, within BWI76_RS24225 at 5050.242 kb on + strand at 5050.630 kb on + strand at 5050.691 kb on + strand at 5050.691 kb on + strand at 5050.833 kb on + strand at 5051.030 kb on - strand, within BWI76_RS24235 at 5051.107 kb on + strand, within BWI76_RS24235
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 5,048,872 - BWI76_RS24215 0.86 -0.4 5,049,017 - -2.0 5,049,040 + -1.4 5,049,154 + +1.5 5,049,378 + BWI76_RS24220 0.46 +1.6 5,049,477 + BWI76_RS24220 0.63 -0.2 5,049,549 - BWI76_RS24220 0.75 +0.2 5,049,636 + BWI76_RS24220 0.89 -0.7 5,049,636 + BWI76_RS24220 0.89 +0.3 5,049,639 - BWI76_RS24220 0.90 -0.2 5,049,644 - -0.7 5,049,655 + +0.4 5,049,853 - BWI76_RS24225 0.14 -0.2 5,050,011 - BWI76_RS24225 0.60 +0.4 5,050,105 - BWI76_RS24225 0.88 +0.2 5,050,107 + BWI76_RS24225 0.89 +2.1 5,050,242 + +0.0 5,050,630 + +0.1 5,050,691 + +0.6 5,050,691 + +0.9 5,050,833 + -1.2 5,051,030 - BWI76_RS24235 0.15 -0.1 5,051,107 + BWI76_RS24235 0.22 +0.1
Or see this region's nucleotide sequence