Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09170

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09160 and BWI76_RS09165 are separated by 47 nucleotidesBWI76_RS09165 and BWI76_RS09170 overlap by 1 nucleotidesBWI76_RS09170 and BWI76_RS09175 are separated by 149 nucleotidesBWI76_RS09175 and BWI76_RS09180 are separated by 157 nucleotides BWI76_RS09160: BWI76_RS09160 - multidrug transporter MdfA, at 1,934,987 to 1,936,222 _RS09160 BWI76_RS09165: BWI76_RS09165 - phosphatase YbjI, at 1,936,270 to 1,937,085 _RS09165 BWI76_RS09170: BWI76_RS09170 - MFS transporter, at 1,937,085 to 1,938,287 _RS09170 BWI76_RS09175: BWI76_RS09175 - DNA-binding transcriptional regulator, at 1,938,437 to 1,938,979 _RS09175 BWI76_RS09180: BWI76_RS09180 - hypothetical protein, at 1,939,137 to 1,939,406 _RS09180 Position (kb) 1937 1938 1939Strain fitness (log2 ratio) -2 -1 0 1 2at 1936.299 kb on - strandat 1936.360 kb on + strand, within BWI76_RS09165at 1936.463 kb on - strand, within BWI76_RS09165at 1936.472 kb on + strand, within BWI76_RS09165at 1936.479 kb on - strand, within BWI76_RS09165at 1936.535 kb on + strandat 1936.543 kb on - strand, within BWI76_RS09165at 1936.922 kb on - strand, within BWI76_RS09165at 1937.081 kb on - strandat 1937.470 kb on - strand, within BWI76_RS09170at 1937.500 kb on - strand, within BWI76_RS09170at 1937.540 kb on + strand, within BWI76_RS09170at 1937.792 kb on + strand, within BWI76_RS09170at 1937.837 kb on + strand, within BWI76_RS09170at 1937.905 kb on + strand, within BWI76_RS09170at 1938.009 kb on - strand, within BWI76_RS09170at 1938.096 kb on - strand, within BWI76_RS09170at 1938.096 kb on - strand, within BWI76_RS09170at 1938.096 kb on - strand, within BWI76_RS09170at 1938.096 kb on - strand, within BWI76_RS09170at 1938.411 kb on - strandat 1938.524 kb on + strand, within BWI76_RS09175at 1938.524 kb on - strand, within BWI76_RS09175at 1938.599 kb on - strand, within BWI76_RS09175at 1938.615 kb on + strand, within BWI76_RS09175at 1938.727 kb on + strand, within BWI76_RS09175at 1938.735 kb on - strand, within BWI76_RS09175at 1938.735 kb on - strand, within BWI76_RS09175at 1938.752 kb on - strand, within BWI76_RS09175at 1938.837 kb on + strand, within BWI76_RS09175at 1938.845 kb on - strand, within BWI76_RS09175at 1938.845 kb on - strand, within BWI76_RS09175at 1938.953 kb on + strandat 1939.094 kb on - strandat 1939.211 kb on - strand, within BWI76_RS09180

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,936,299 - -0.5
1,936,360 + BWI76_RS09165 0.11 -0.7
1,936,463 - BWI76_RS09165 0.24 -1.2
1,936,472 + BWI76_RS09165 0.25 -1.9
1,936,479 - BWI76_RS09165 0.26 -0.2
1,936,535 + +2.3
1,936,543 - BWI76_RS09165 0.33 -0.1
1,936,922 - BWI76_RS09165 0.80 +0.7
1,937,081 - +0.5
1,937,470 - BWI76_RS09170 0.32 +1.5
1,937,500 - BWI76_RS09170 0.34 +0.2
1,937,540 + BWI76_RS09170 0.38 +0.2
1,937,792 + BWI76_RS09170 0.59 +1.9
1,937,837 + BWI76_RS09170 0.63 +0.3
1,937,905 + BWI76_RS09170 0.68 +0.7
1,938,009 - BWI76_RS09170 0.77 +0.0
1,938,096 - BWI76_RS09170 0.84 +0.7
1,938,096 - BWI76_RS09170 0.84 +0.2
1,938,096 - BWI76_RS09170 0.84 +0.2
1,938,096 - BWI76_RS09170 0.84 -0.5
1,938,411 - -0.1
1,938,524 + BWI76_RS09175 0.16 -0.6
1,938,524 - BWI76_RS09175 0.16 -0.1
1,938,599 - BWI76_RS09175 0.30 +0.4
1,938,615 + BWI76_RS09175 0.33 -0.4
1,938,727 + BWI76_RS09175 0.53 +0.4
1,938,735 - BWI76_RS09175 0.55 +0.3
1,938,735 - BWI76_RS09175 0.55 +0.7
1,938,752 - BWI76_RS09175 0.58 -0.1
1,938,837 + BWI76_RS09175 0.74 +0.1
1,938,845 - BWI76_RS09175 0.75 +0.4
1,938,845 - BWI76_RS09175 0.75 +0.4
1,938,953 + -1.3
1,939,094 - -0.8
1,939,211 - BWI76_RS09180 0.27 -0.0

Or see this region's nucleotide sequence