Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05700 and BWI76_RS05705 are separated by 104 nucleotides BWI76_RS05705 and BWI76_RS05710 are separated by 88 nucleotides BWI76_RS05710 and BWI76_RS05715 are separated by 68 nucleotides
BWI76_RS05700: BWI76_RS05700 - coenzyme F420-dependent NADP oxidoreductase, at 1,198,804 to 1,199,289
_RS05700
BWI76_RS05705: BWI76_RS05705 - transporter, at 1,199,394 to 1,199,666
_RS05705
BWI76_RS05710: BWI76_RS05710 - TetR family transcriptional regulator, at 1,199,755 to 1,200,375
_RS05710
BWI76_RS05715: BWI76_RS05715 - RND family efflux transporter MFP subunit, at 1,200,444 to 1,201,553
_RS05715
Position (kb)
1199
1200
1201 Strain fitness (log2 ratio)
-1
0
1
2 at 1198.758 kb on - strand at 1198.807 kb on + strand at 1198.815 kb on - strand at 1198.863 kb on + strand, within BWI76_RS05700 at 1198.871 kb on - strand, within BWI76_RS05700 at 1198.871 kb on - strand at 1198.912 kb on - strand, within BWI76_RS05700 at 1198.934 kb on - strand, within BWI76_RS05700 at 1198.977 kb on + strand, within BWI76_RS05700 at 1199.007 kb on - strand, within BWI76_RS05700 at 1199.007 kb on - strand, within BWI76_RS05700 at 1199.026 kb on - strand, within BWI76_RS05700 at 1199.046 kb on + strand, within BWI76_RS05700 at 1199.081 kb on + strand, within BWI76_RS05700 at 1199.274 kb on + strand at 1199.400 kb on + strand at 1199.408 kb on - strand at 1199.408 kb on - strand at 1199.642 kb on + strand at 1199.662 kb on + strand at 1199.873 kb on + strand, within BWI76_RS05710 at 1200.078 kb on + strand, within BWI76_RS05710 at 1200.170 kb on + strand, within BWI76_RS05710 at 1200.178 kb on - strand, within BWI76_RS05710 at 1200.270 kb on + strand, within BWI76_RS05710 at 1200.336 kb on + strand at 1200.474 kb on - strand at 1200.679 kb on - strand, within BWI76_RS05715 at 1200.866 kb on + strand, within BWI76_RS05715 at 1200.944 kb on + strand, within BWI76_RS05715 at 1200.944 kb on + strand, within BWI76_RS05715 at 1201.006 kb on + strand, within BWI76_RS05715 at 1201.021 kb on - strand, within BWI76_RS05715 at 1201.220 kb on + strand, within BWI76_RS05715
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 1,198,758 - -0.2 1,198,807 + -0.1 1,198,815 - +0.2 1,198,863 + BWI76_RS05700 0.12 -0.1 1,198,871 - BWI76_RS05700 0.14 +0.5 1,198,871 - +2.1 1,198,912 - BWI76_RS05700 0.22 +1.5 1,198,934 - BWI76_RS05700 0.27 +0.0 1,198,977 + BWI76_RS05700 0.36 +0.1 1,199,007 - BWI76_RS05700 0.42 -1.1 1,199,007 - BWI76_RS05700 0.42 -1.6 1,199,026 - BWI76_RS05700 0.46 +0.9 1,199,046 + BWI76_RS05700 0.50 -0.6 1,199,081 + BWI76_RS05700 0.57 +0.1 1,199,274 + +0.3 1,199,400 + -0.3 1,199,408 - +0.1 1,199,408 - +0.0 1,199,642 + +0.4 1,199,662 + -0.5 1,199,873 + BWI76_RS05710 0.19 +0.5 1,200,078 + BWI76_RS05710 0.52 -0.4 1,200,170 + BWI76_RS05710 0.67 +1.1 1,200,178 - BWI76_RS05710 0.68 +0.7 1,200,270 + BWI76_RS05710 0.83 +0.3 1,200,336 + +0.7 1,200,474 - -0.3 1,200,679 - BWI76_RS05715 0.21 +0.2 1,200,866 + BWI76_RS05715 0.38 -0.1 1,200,944 + BWI76_RS05715 0.45 -0.2 1,200,944 + BWI76_RS05715 0.45 +0.2 1,201,006 + BWI76_RS05715 0.51 -0.5 1,201,021 - BWI76_RS05715 0.52 -0.1 1,201,220 + BWI76_RS05715 0.70 +0.1
Or see this region's nucleotide sequence