Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00320

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00310 and AO353_00315 are separated by 123 nucleotidesAO353_00315 and AO353_00320 overlap by 1 nucleotidesAO353_00320 and AO353_00325 are separated by 276 nucleotidesAO353_00325 and AO353_00330 are separated by 63 nucleotides AO353_00310: AO353_00310 - transaldolase, at 57,111 to 58,037 _00310 AO353_00315: AO353_00315 - anti-anti-sigma factor, at 58,161 to 58,643 _00315 AO353_00320: AO353_00320 - chemotaxis protein CheY, at 58,643 to 59,824 _00320 AO353_00325: AO353_00325 - pilus assembly protein, at 60,101 to 60,400 _00325 AO353_00330: AO353_00330 - hypothetical protein, at 60,464 to 61,153 _00330 Position (kb) 58 59 60Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 57.645 kb on + strand, within AO353_00310at 57.645 kb on + strand, within AO353_00310at 57.645 kb on + strand, within AO353_00310at 57.645 kb on + strand, within AO353_00310at 57.669 kb on + strand, within AO353_00310at 57.669 kb on + strand, within AO353_00310at 57.669 kb on + strand, within AO353_00310at 57.670 kb on - strand, within AO353_00310at 57.670 kb on - strand, within AO353_00310at 57.714 kb on + strand, within AO353_00310at 57.714 kb on + strand, within AO353_00310at 57.714 kb on + strand, within AO353_00310at 57.715 kb on - strand, within AO353_00310at 57.715 kb on - strand, within AO353_00310at 57.715 kb on - strand, within AO353_00310at 57.715 kb on - strand, within AO353_00310at 57.715 kb on - strand, within AO353_00310at 57.720 kb on + strand, within AO353_00310at 57.720 kb on + strand, within AO353_00310at 57.720 kb on + strand, within AO353_00310at 57.720 kb on + strand, within AO353_00310at 57.720 kb on + strand, within AO353_00310at 57.721 kb on - strand, within AO353_00310at 57.721 kb on - strand, within AO353_00310at 57.721 kb on - strand, within AO353_00310at 57.723 kb on + strand, within AO353_00310at 57.723 kb on + strand, within AO353_00310at 57.723 kb on + strand, within AO353_00310at 57.723 kb on + strand, within AO353_00310at 57.724 kb on - strand, within AO353_00310at 57.724 kb on - strand, within AO353_00310at 57.724 kb on - strand, within AO353_00310at 57.724 kb on - strand, within AO353_00310at 57.724 kb on - strand, within AO353_00310at 57.724 kb on - strand, within AO353_00310at 57.738 kb on + strand, within AO353_00310at 57.738 kb on + strand, within AO353_00310at 57.738 kb on + strand, within AO353_00310at 57.738 kb on + strand, within AO353_00310at 57.739 kb on - strand, within AO353_00310at 57.739 kb on - strand, within AO353_00310at 57.739 kb on - strand, within AO353_00310at 57.739 kb on - strand, within AO353_00310at 57.739 kb on - strand, within AO353_00310at 57.978 kb on - strandat 57.978 kb on - strandat 57.978 kb on - strandat 59.847 kb on - strandat 59.857 kb on - strandat 59.904 kb on - strandat 59.940 kb on - strandat 59.969 kb on - strandat 59.969 kb on - strandat 60.035 kb on + strandat 60.035 kb on + strandat 60.035 kb on + strandat 60.035 kb on + strandat 60.035 kb on + strandat 60.035 kb on + strandat 60.035 kb on + strandat 60.035 kb on + strandat 60.035 kb on + strandat 60.036 kb on - strandat 60.036 kb on - strandat 60.036 kb on - strandat 60.057 kb on + strandat 60.058 kb on - strandat 60.058 kb on - strandat 60.059 kb on + strandat 60.059 kb on + strandat 60.059 kb on + strandat 60.059 kb on + strandat 60.060 kb on - strandat 60.060 kb on - strandat 60.060 kb on - strandat 60.060 kb on - strandat 60.122 kb on + strandat 60.122 kb on + strandat 60.123 kb on - strandat 60.140 kb on + strand, within AO353_00325at 60.140 kb on + strand, within AO353_00325at 60.140 kb on + strand, within AO353_00325at 60.140 kb on + strand, within AO353_00325at 60.141 kb on - strand, within AO353_00325at 60.279 kb on + strand, within AO353_00325at 60.279 kb on + strand, within AO353_00325at 60.279 kb on + strand, within AO353_00325at 60.279 kb on + strand, within AO353_00325at 60.279 kb on + strand, within AO353_00325at 60.280 kb on - strand, within AO353_00325at 60.280 kb on - strand, within AO353_00325at 60.280 kb on - strand, within AO353_00325at 60.379 kb on + strandat 60.379 kb on + strandat 60.379 kb on + strandat 60.379 kb on + strandat 60.379 kb on + strandat 60.379 kb on + strandat 60.379 kb on + strandat 60.380 kb on - strandat 60.380 kb on - strandat 60.380 kb on - strandat 60.380 kb on - strandat 60.380 kb on - strandat 60.465 kb on + strandat 60.519 kb on + strandat 60.520 kb on - strandat 60.520 kb on - strandat 60.520 kb on - strandat 60.540 kb on + strand, within AO353_00330at 60.540 kb on + strand, within AO353_00330at 60.540 kb on + strand, within AO353_00330at 60.540 kb on + strand, within AO353_00330at 60.540 kb on + strand, within AO353_00330at 60.541 kb on - strand, within AO353_00330at 60.541 kb on - strand, within AO353_00330at 60.541 kb on - strand, within AO353_00330at 60.541 kb on - strand, within AO353_00330at 60.541 kb on - strand, within AO353_00330at 60.616 kb on + strand, within AO353_00330at 60.616 kb on + strand, within AO353_00330at 60.617 kb on - strand, within AO353_00330at 60.617 kb on - strand, within AO353_00330at 60.661 kb on - strand, within AO353_00330at 60.661 kb on - strand, within AO353_00330at 60.664 kb on + strand, within AO353_00330at 60.672 kb on + strand, within AO353_00330at 60.672 kb on + strand, within AO353_00330at 60.672 kb on + strand, within AO353_00330at 60.672 kb on + strand, within AO353_00330at 60.672 kb on + strand, within AO353_00330at 60.672 kb on + strand, within AO353_00330at 60.672 kb on + strand, within AO353_00330at 60.672 kb on + strand, within AO353_00330at 60.672 kb on + strand, within AO353_00330at 60.672 kb on + strand, within AO353_00330at 60.672 kb on + strand, within AO353_00330at 60.673 kb on - strand, within AO353_00330at 60.673 kb on - strand, within AO353_00330at 60.673 kb on - strand, within AO353_00330at 60.673 kb on - strand, within AO353_00330at 60.673 kb on - strand, within AO353_00330at 60.673 kb on - strand, within AO353_00330at 60.673 kb on - strand, within AO353_00330at 60.673 kb on - strand, within AO353_00330at 60.673 kb on - strand, within AO353_00330at 60.673 kb on - strand, within AO353_00330at 60.673 kb on - strand, within AO353_00330at 60.673 kb on - strand, within AO353_00330at 60.673 kb on - strand, within AO353_00330at 60.673 kb on - strand, within AO353_00330at 60.673 kb on - strand, within AO353_00330at 60.673 kb on - strand, within AO353_00330at 60.674 kb on + strand, within AO353_00330at 60.674 kb on + strand, within AO353_00330at 60.675 kb on - strand, within AO353_00330at 60.726 kb on + strand, within AO353_00330at 60.726 kb on + strand, within AO353_00330at 60.727 kb on - strand, within AO353_00330

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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57,645 + AO353_00310 0.58 +0.5
57,645 + AO353_00310 0.58 -1.3
57,645 + AO353_00310 0.58 -2.6
57,645 + AO353_00310 0.58 -1.6
57,669 + AO353_00310 0.60 -0.8
57,669 + AO353_00310 0.60 +0.8
57,669 + AO353_00310 0.60 -2.0
57,670 - AO353_00310 0.60 -0.7
57,670 - AO353_00310 0.60 -2.9
57,714 + AO353_00310 0.65 -1.8
57,714 + AO353_00310 0.65 +1.7
57,714 + AO353_00310 0.65 +0.1
57,715 - AO353_00310 0.65 +4.1
57,715 - AO353_00310 0.65 -0.3
57,715 - AO353_00310 0.65 -1.5
57,715 - AO353_00310 0.65 -1.7
57,715 - AO353_00310 0.65 -1.6
57,720 + AO353_00310 0.66 +0.2
57,720 + AO353_00310 0.66 -1.5
57,720 + AO353_00310 0.66 +1.0
57,720 + AO353_00310 0.66 +0.5
57,720 + AO353_00310 0.66 -0.0
57,721 - AO353_00310 0.66 -0.5
57,721 - AO353_00310 0.66 -1.6
57,721 - AO353_00310 0.66 +0.4
57,723 + AO353_00310 0.66 -1.6
57,723 + AO353_00310 0.66 +0.1
57,723 + AO353_00310 0.66 -0.4
57,723 + AO353_00310 0.66 -2.8
57,724 - AO353_00310 0.66 -1.6
57,724 - AO353_00310 0.66 -0.2
57,724 - AO353_00310 0.66 -1.0
57,724 - AO353_00310 0.66 +1.5
57,724 - AO353_00310 0.66 -2.7
57,724 - AO353_00310 0.66 -2.4
57,738 + AO353_00310 0.68 +1.5
57,738 + AO353_00310 0.68 -0.5
57,738 + AO353_00310 0.68 +0.1
57,738 + AO353_00310 0.68 -1.7
57,739 - AO353_00310 0.68 +0.9
57,739 - AO353_00310 0.68 +1.5
57,739 - AO353_00310 0.68 +1.0
57,739 - AO353_00310 0.68 -2.1
57,739 - AO353_00310 0.68 +0.2
57,978 - -3.2
57,978 - -0.0
57,978 - -1.7
59,847 - +0.5
59,857 - +1.0
59,904 - +0.9
59,940 - +0.2
59,969 - -1.5
59,969 - -0.3
60,035 + -1.8
60,035 + -1.8
60,035 + -0.8
60,035 + -0.0
60,035 + -2.6
60,035 + -0.9
60,035 + +1.0
60,035 + -0.3
60,035 + -2.4
60,036 - +2.9
60,036 - -0.2
60,036 - -1.6
60,057 + -0.6
60,058 - -1.3
60,058 - -0.1
60,059 + +1.0
60,059 + -1.3
60,059 + +1.0
60,059 + -1.3
60,060 - -2.4
60,060 - -1.0
60,060 - +4.4
60,060 - +2.3
60,122 + -1.7
60,122 + -2.8
60,123 - +2.8
60,140 + AO353_00325 0.13 -1.4
60,140 + AO353_00325 0.13 +0.2
60,140 + AO353_00325 0.13 +2.4
60,140 + AO353_00325 0.13 -0.8
60,141 - AO353_00325 0.13 +0.3
60,279 + AO353_00325 0.59 +4.0
60,279 + AO353_00325 0.59 -0.1
60,279 + AO353_00325 0.59 -0.2
60,279 + AO353_00325 0.59 +1.4
60,279 + AO353_00325 0.59 -0.7
60,280 - AO353_00325 0.60 -2.1
60,280 - AO353_00325 0.60 -0.9
60,280 - AO353_00325 0.60 +0.5
60,379 + -1.1
60,379 + +2.5
60,379 + +2.2
60,379 + +1.3
60,379 + -1.6
60,379 + +1.7
60,379 + -0.0
60,380 - -0.9
60,380 - -1.5
60,380 - -2.0
60,380 - -0.2
60,380 - +0.5
60,465 + -2.5
60,519 + +3.5
60,520 - -2.5
60,520 - -1.4
60,520 - -1.5
60,540 + AO353_00330 0.11 -1.1
60,540 + AO353_00330 0.11 -1.4
60,540 + AO353_00330 0.11 -1.0
60,540 + AO353_00330 0.11 -0.6
60,540 + AO353_00330 0.11 +1.2
60,541 - AO353_00330 0.11 +1.5
60,541 - AO353_00330 0.11 -1.2
60,541 - AO353_00330 0.11 +0.8
60,541 - AO353_00330 0.11 -1.3
60,541 - AO353_00330 0.11 -2.8
60,616 + AO353_00330 0.22 -1.0
60,616 + AO353_00330 0.22 -1.5
60,617 - AO353_00330 0.22 -1.4
60,617 - AO353_00330 0.22 +0.2
60,661 - AO353_00330 0.29 +1.3
60,661 - AO353_00330 0.29 -1.6
60,664 + AO353_00330 0.29 -0.0
60,672 + AO353_00330 0.30 +0.7
60,672 + AO353_00330 0.30 -1.8
60,672 + AO353_00330 0.30 +0.5
60,672 + AO353_00330 0.30 -1.1
60,672 + AO353_00330 0.30 -0.2
60,672 + AO353_00330 0.30 -2.0
60,672 + AO353_00330 0.30 -2.5
60,672 + AO353_00330 0.30 -0.9
60,672 + AO353_00330 0.30 -1.0
60,672 + AO353_00330 0.30 -2.1
60,672 + AO353_00330 0.30 -0.6
60,673 - AO353_00330 0.30 +0.2
60,673 - AO353_00330 0.30 +0.2
60,673 - AO353_00330 0.30 +0.2
60,673 - AO353_00330 0.30 +0.2
60,673 - AO353_00330 0.30 -1.2
60,673 - AO353_00330 0.30 -2.9
60,673 - AO353_00330 0.30 -0.8
60,673 - AO353_00330 0.30 -0.8
60,673 - AO353_00330 0.30 -0.0
60,673 - AO353_00330 0.30 +1.2
60,673 - AO353_00330 0.30 -1.0
60,673 - AO353_00330 0.30 -1.6
60,673 - AO353_00330 0.30 -1.3
60,673 - AO353_00330 0.30 +0.5
60,673 - AO353_00330 0.30 +0.4
60,673 - AO353_00330 0.30 -0.5
60,674 + AO353_00330 0.30 +2.9
60,674 + AO353_00330 0.30 -0.0
60,675 - AO353_00330 0.31 -0.3
60,726 + AO353_00330 0.38 -0.8
60,726 + AO353_00330 0.38 -0.3
60,727 - AO353_00330 0.38 -0.6

Or see this region's nucleotide sequence