Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04565 and AO353_04570 overlap by 1 nucleotides AO353_04570 and AO353_04575 are separated by 162 nucleotides AO353_04575 and AO353_04580 are separated by 87 nucleotides AO353_04580 and AO353_04585 are separated by 39 nucleotides
AO353_04565: AO353_04565 - nucleoid-associated protein, at 986,852 to 987,856
_04565
AO353_04570: AO353_04570 - glutaredoxin, at 987,856 to 988,206
_04570
AO353_04575: AO353_04575 - glutathione S-transferase, at 988,369 to 989,304
_04575
AO353_04580: AO353_04580 - GIY-YIG nuclease, at 989,392 to 989,712
_04580
AO353_04585: AO353_04585 - ketosteroid isomerase, at 989,752 to 990,222
_04585
Position (kb) 988
989
990 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 987.401 kb on + strand, within AO353_04565 at 987.401 kb on + strand, within AO353_04565 at 987.545 kb on + strand, within AO353_04565 at 987.545 kb on + strand, within AO353_04565 at 987.545 kb on + strand, within AO353_04565 at 987.632 kb on + strand, within AO353_04565 at 987.633 kb on - strand, within AO353_04565 at 987.633 kb on - strand, within AO353_04565 at 987.633 kb on - strand, within AO353_04565 at 987.633 kb on - strand, within AO353_04565 at 987.779 kb on + strand at 987.869 kb on + strand at 987.869 kb on + strand at 987.870 kb on - strand at 987.870 kb on - strand at 987.911 kb on - strand, within AO353_04570 at 987.998 kb on - strand, within AO353_04570 at 987.998 kb on - strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.109 kb on - strand, within AO353_04570 at 988.109 kb on - strand, within AO353_04570 at 988.109 kb on - strand, within AO353_04570 at 988.109 kb on - strand, within AO353_04570 at 988.133 kb on + strand, within AO353_04570 at 988.204 kb on + strand at 988.204 kb on + strand at 988.204 kb on + strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.259 kb on + strand at 988.260 kb on - strand at 988.288 kb on + strand at 988.288 kb on + strand at 988.288 kb on + strand at 988.289 kb on - strand at 988.289 kb on - strand at 988.298 kb on - strand at 988.298 kb on - strand at 988.298 kb on - strand at 988.298 kb on - strand at 988.483 kb on + strand, within AO353_04575 at 988.483 kb on + strand, within AO353_04575 at 988.483 kb on + strand, within AO353_04575 at 988.484 kb on - strand, within AO353_04575 at 988.502 kb on + strand, within AO353_04575 at 988.503 kb on - strand, within AO353_04575 at 988.522 kb on + strand, within AO353_04575 at 988.522 kb on + strand, within AO353_04575 at 988.522 kb on + strand, within AO353_04575 at 988.522 kb on + strand, within AO353_04575 at 988.522 kb on + strand, within AO353_04575 at 988.522 kb on + strand, within AO353_04575 at 988.522 kb on + strand, within AO353_04575 at 988.522 kb on + strand, within AO353_04575 at 988.523 kb on - strand, within AO353_04575 at 988.523 kb on - strand, within AO353_04575 at 988.523 kb on - strand, within AO353_04575 at 988.523 kb on - strand, within AO353_04575 at 988.523 kb on - strand, within AO353_04575 at 988.523 kb on - strand, within AO353_04575 at 988.523 kb on - strand, within AO353_04575 at 988.784 kb on + strand, within AO353_04575 at 988.784 kb on + strand, within AO353_04575 at 988.784 kb on + strand, within AO353_04575 at 988.784 kb on + strand, within AO353_04575 at 988.785 kb on - strand, within AO353_04575 at 988.785 kb on - strand, within AO353_04575 at 988.785 kb on - strand, within AO353_04575 at 988.785 kb on - strand, within AO353_04575 at 989.117 kb on + strand, within AO353_04575 at 989.117 kb on + strand, within AO353_04575 at 989.117 kb on + strand, within AO353_04575 at 989.117 kb on + strand, within AO353_04575 at 989.117 kb on + strand, within AO353_04575 at 989.117 kb on + strand, within AO353_04575 at 989.117 kb on + strand, within AO353_04575 at 989.118 kb on - strand, within AO353_04575 at 989.118 kb on - strand, within AO353_04575 at 989.118 kb on - strand, within AO353_04575 at 989.118 kb on - strand, within AO353_04575 at 989.118 kb on - strand, within AO353_04575 at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.340 kb on + strand at 989.363 kb on + strand at 989.386 kb on + strand at 989.386 kb on + strand at 989.386 kb on + strand at 989.386 kb on + strand at 989.386 kb on + strand at 989.386 kb on + strand at 989.386 kb on + strand at 989.386 kb on + strand at 989.386 kb on + strand at 989.387 kb on - strand at 989.387 kb on - strand at 989.387 kb on - strand at 989.387 kb on - strand at 989.387 kb on - strand at 989.387 kb on - strand at 989.402 kb on - strand at 989.491 kb on - strand, within AO353_04580 at 989.510 kb on + strand, within AO353_04580 at 989.510 kb on + strand, within AO353_04580 at 989.510 kb on + strand, within AO353_04580 at 989.510 kb on + strand, within AO353_04580 at 989.510 kb on + strand, within AO353_04580 at 989.511 kb on - strand, within AO353_04580 at 989.556 kb on + strand, within AO353_04580 at 989.609 kb on + strand, within AO353_04580 at 989.609 kb on + strand, within AO353_04580 at 989.610 kb on - strand, within AO353_04580 at 989.639 kb on + strand, within AO353_04580 at 989.639 kb on + strand, within AO353_04580 at 989.639 kb on + strand, within AO353_04580 at 989.730 kb on + strand at 989.731 kb on - strand at 989.750 kb on + strand at 989.751 kb on - strand at 989.975 kb on + strand, within AO353_04585 at 989.975 kb on + strand, within AO353_04585 at 989.975 kb on + strand, within AO353_04585 at 989.975 kb on + strand, within AO353_04585 at 989.975 kb on + strand, within AO353_04585 at 989.975 kb on + strand, within AO353_04585 at 989.975 kb on + strand, within AO353_04585 at 989.976 kb on - strand, within AO353_04585 at 989.976 kb on - strand, within AO353_04585 at 989.976 kb on - strand, within AO353_04585 at 989.976 kb on - strand, within AO353_04585 at 990.141 kb on - strand, within AO353_04585 at 990.185 kb on + strand at 990.185 kb on + strand at 990.185 kb on + strand at 990.185 kb on + strand at 990.185 kb on + strand at 990.185 kb on + strand at 990.185 kb on + strand at 990.186 kb on - strand at 990.186 kb on - strand at 990.186 kb on - strand at 990.186 kb on - strand at 990.273 kb on + strand at 990.274 kb on - strand at 990.297 kb on - strand at 990.297 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 987,401 + AO353_04565 0.55 -1.4 987,401 + AO353_04565 0.55 -0.6 987,545 + AO353_04565 0.69 +0.4 987,545 + AO353_04565 0.69 -0.1 987,545 + AO353_04565 0.69 -1.2 987,632 + AO353_04565 0.78 -0.3 987,633 - AO353_04565 0.78 -1.5 987,633 - AO353_04565 0.78 -1.2 987,633 - AO353_04565 0.78 -2.4 987,633 - AO353_04565 0.78 -0.9 987,779 + -1.8 987,869 + -0.1 987,869 + +0.2 987,870 - -0.1 987,870 - -2.1 987,911 - AO353_04570 0.16 -0.4 987,998 - AO353_04570 0.40 +0.2 987,998 - AO353_04570 0.40 +0.8 988,108 + AO353_04570 0.72 +1.0 988,108 + AO353_04570 0.72 +1.2 988,108 + AO353_04570 0.72 -2.3 988,108 + AO353_04570 0.72 +1.3 988,108 + AO353_04570 0.72 -0.5 988,108 + AO353_04570 0.72 -0.4 988,108 + AO353_04570 0.72 -1.8 988,108 + AO353_04570 0.72 -1.0 988,108 + AO353_04570 0.72 -0.1 988,108 + AO353_04570 0.72 +0.5 988,109 - AO353_04570 0.72 -2.4 988,109 - AO353_04570 0.72 +0.0 988,109 - AO353_04570 0.72 -1.1 988,109 - AO353_04570 0.72 +0.7 988,133 + AO353_04570 0.79 -1.3 988,204 + +0.5 988,204 + -0.5 988,204 + -0.8 988,205 - -2.9 988,205 - -0.3 988,205 - -0.3 988,205 - +1.7 988,205 - +0.6 988,205 - -0.0 988,205 - -0.4 988,205 - +0.3 988,205 - -0.3 988,205 - -1.6 988,205 - -0.6 988,205 - -0.7 988,259 + +0.5 988,260 - +2.5 988,288 + -1.3 988,288 + +2.2 988,288 + -0.7 988,289 - +1.3 988,289 - +1.6 988,298 - -1.7 988,298 - -0.8 988,298 - -0.6 988,298 - +0.9 988,483 + AO353_04575 0.12 +0.0 988,483 + AO353_04575 0.12 -0.3 988,483 + AO353_04575 0.12 +0.5 988,484 - AO353_04575 0.12 -2.8 988,502 + AO353_04575 0.14 +0.7 988,503 - AO353_04575 0.14 -1.9 988,522 + AO353_04575 0.16 -2.3 988,522 + AO353_04575 0.16 +0.2 988,522 + AO353_04575 0.16 +1.8 988,522 + AO353_04575 0.16 +0.9 988,522 + AO353_04575 0.16 -1.2 988,522 + AO353_04575 0.16 -0.5 988,522 + AO353_04575 0.16 -0.8 988,522 + AO353_04575 0.16 +0.6 988,523 - AO353_04575 0.16 -1.2 988,523 - AO353_04575 0.16 +0.2 988,523 - AO353_04575 0.16 +0.4 988,523 - AO353_04575 0.16 +2.5 988,523 - AO353_04575 0.16 -0.9 988,523 - AO353_04575 0.16 -1.7 988,523 - AO353_04575 0.16 +1.4 988,784 + AO353_04575 0.44 +0.7 988,784 + AO353_04575 0.44 -2.0 988,784 + AO353_04575 0.44 -0.1 988,784 + AO353_04575 0.44 -1.1 988,785 - AO353_04575 0.44 +1.2 988,785 - AO353_04575 0.44 -0.8 988,785 - AO353_04575 0.44 -0.8 988,785 - AO353_04575 0.44 +1.4 989,117 + AO353_04575 0.80 +0.8 989,117 + AO353_04575 0.80 -1.7 989,117 + AO353_04575 0.80 -1.6 989,117 + AO353_04575 0.80 -0.4 989,117 + AO353_04575 0.80 +0.7 989,117 + AO353_04575 0.80 +0.9 989,117 + AO353_04575 0.80 +0.6 989,118 - AO353_04575 0.80 -0.8 989,118 - AO353_04575 0.80 -2.2 989,118 - AO353_04575 0.80 +1.5 989,118 - AO353_04575 0.80 +0.9 989,118 - AO353_04575 0.80 +1.6 989,325 + +1.4 989,325 + -0.2 989,325 + +1.1 989,325 + -0.8 989,325 + -0.3 989,325 + -1.7 989,325 + +0.6 989,325 + -0.5 989,325 + -2.4 989,325 + +1.6 989,325 + -0.8 989,325 + -0.9 989,325 + -0.1 989,340 + -1.3 989,363 + -2.3 989,386 + -2.0 989,386 + -2.8 989,386 + -0.1 989,386 + -2.4 989,386 + +1.5 989,386 + -0.8 989,386 + +0.1 989,386 + -1.3 989,386 + -0.1 989,387 - +1.4 989,387 - +2.3 989,387 - -1.0 989,387 - -0.7 989,387 - -1.3 989,387 - -0.3 989,402 - +0.2 989,491 - AO353_04580 0.31 -0.7 989,510 + AO353_04580 0.37 +2.6 989,510 + AO353_04580 0.37 +0.5 989,510 + AO353_04580 0.37 +1.4 989,510 + AO353_04580 0.37 +1.6 989,510 + AO353_04580 0.37 +1.2 989,511 - AO353_04580 0.37 +0.7 989,556 + AO353_04580 0.51 +0.6 989,609 + AO353_04580 0.68 -1.1 989,609 + AO353_04580 0.68 +1.4 989,610 - AO353_04580 0.68 -0.1 989,639 + AO353_04580 0.77 +0.3 989,639 + AO353_04580 0.77 -0.7 989,639 + AO353_04580 0.77 +0.7 989,730 + +0.7 989,731 - -0.6 989,750 + -0.4 989,751 - -1.4 989,975 + AO353_04585 0.47 +0.4 989,975 + AO353_04585 0.47 +1.5 989,975 + AO353_04585 0.47 -0.1 989,975 + AO353_04585 0.47 -1.5 989,975 + AO353_04585 0.47 +1.1 989,975 + AO353_04585 0.47 +0.1 989,975 + AO353_04585 0.47 -1.8 989,976 - AO353_04585 0.48 +0.7 989,976 - AO353_04585 0.48 +0.6 989,976 - AO353_04585 0.48 +0.7 989,976 - AO353_04585 0.48 +2.6 990,141 - AO353_04585 0.83 -0.1 990,185 + -2.7 990,185 + -0.6 990,185 + +0.4 990,185 + -1.4 990,185 + +1.5 990,185 + -0.8 990,185 + +1.3 990,186 - -0.3 990,186 - -0.4 990,186 - +1.5 990,186 - -0.1 990,273 + -1.6 990,274 - -0.7 990,297 - -0.2 990,297 - -1.4
Or see this region's nucleotide sequence