Experiment: molybdate 0.25 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4677 and Pf6N2E2_4678 overlap by 9 nucleotides Pf6N2E2_4678 and Pf6N2E2_4679 overlap by 19 nucleotides Pf6N2E2_4679 and Pf6N2E2_4680 are separated by 80 nucleotides
Pf6N2E2_4677 - Choline dehydrogenase (EC 1.1.99.1), at 5,410,297 to 5,412,000
_4677
Pf6N2E2_4678 - hypothetical protein, at 5,411,992 to 5,412,231
_4678
Pf6N2E2_4679 - Betaine aldehyde dehydrogenase (EC 1.2.1.8), at 5,412,213 to 5,413,685
_4679
Pf6N2E2_4680 - HTH-type transcriptional regulator BetI, at 5,413,766 to 5,414,386
_4680
Position (kb)
5412
5413
5414 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5411.384 kb on + strand, within Pf6N2E2_4677 at 5411.385 kb on - strand, within Pf6N2E2_4677 at 5411.497 kb on + strand, within Pf6N2E2_4677 at 5411.498 kb on - strand, within Pf6N2E2_4677 at 5411.625 kb on - strand, within Pf6N2E2_4677 at 5411.625 kb on - strand, within Pf6N2E2_4677 at 5411.642 kb on + strand, within Pf6N2E2_4677 at 5411.642 kb on + strand, within Pf6N2E2_4677 at 5411.643 kb on - strand, within Pf6N2E2_4677 at 5411.643 kb on - strand, within Pf6N2E2_4677 at 5411.643 kb on - strand, within Pf6N2E2_4677 at 5411.684 kb on + strand, within Pf6N2E2_4677 at 5411.685 kb on - strand, within Pf6N2E2_4677 at 5411.708 kb on + strand, within Pf6N2E2_4677 at 5411.708 kb on + strand, within Pf6N2E2_4677 at 5411.708 kb on + strand, within Pf6N2E2_4677 at 5411.708 kb on + strand, within Pf6N2E2_4677 at 5411.708 kb on + strand, within Pf6N2E2_4677 at 5411.708 kb on + strand, within Pf6N2E2_4677 at 5411.708 kb on + strand, within Pf6N2E2_4677 at 5411.708 kb on + strand, within Pf6N2E2_4677 at 5411.709 kb on - strand, within Pf6N2E2_4677 at 5411.709 kb on - strand, within Pf6N2E2_4677 at 5411.709 kb on - strand, within Pf6N2E2_4677 at 5411.709 kb on - strand, within Pf6N2E2_4677 at 5411.709 kb on - strand, within Pf6N2E2_4677 at 5411.805 kb on - strand, within Pf6N2E2_4677 at 5411.981 kb on + strand at 5411.981 kb on + strand at 5411.982 kb on - strand at 5411.989 kb on + strand at 5411.989 kb on + strand at 5411.990 kb on - strand at 5412.099 kb on - strand, within Pf6N2E2_4678 at 5412.249 kb on + strand at 5412.319 kb on + strand at 5412.375 kb on - strand, within Pf6N2E2_4679 at 5412.493 kb on + strand, within Pf6N2E2_4679 at 5412.494 kb on - strand, within Pf6N2E2_4679 at 5412.668 kb on - strand, within Pf6N2E2_4679 at 5412.668 kb on - strand, within Pf6N2E2_4679 at 5412.668 kb on - strand, within Pf6N2E2_4679 at 5412.847 kb on + strand, within Pf6N2E2_4679 at 5412.847 kb on + strand, within Pf6N2E2_4679 at 5412.847 kb on + strand, within Pf6N2E2_4679 at 5412.848 kb on - strand, within Pf6N2E2_4679 at 5412.848 kb on - strand, within Pf6N2E2_4679 at 5413.111 kb on + strand, within Pf6N2E2_4679 at 5413.112 kb on - strand, within Pf6N2E2_4679 at 5413.112 kb on - strand, within Pf6N2E2_4679 at 5413.112 kb on - strand, within Pf6N2E2_4679 at 5413.251 kb on + strand, within Pf6N2E2_4679 at 5413.251 kb on + strand, within Pf6N2E2_4679 at 5413.251 kb on + strand, within Pf6N2E2_4679 at 5413.276 kb on + strand, within Pf6N2E2_4679 at 5413.276 kb on + strand, within Pf6N2E2_4679 at 5413.339 kb on + strand, within Pf6N2E2_4679 at 5413.339 kb on + strand, within Pf6N2E2_4679 at 5413.339 kb on + strand, within Pf6N2E2_4679 at 5413.340 kb on - strand, within Pf6N2E2_4679 at 5413.340 kb on - strand, within Pf6N2E2_4679 at 5413.342 kb on + strand, within Pf6N2E2_4679 at 5413.343 kb on - strand, within Pf6N2E2_4679 at 5413.343 kb on - strand, within Pf6N2E2_4679 at 5413.343 kb on - strand, within Pf6N2E2_4679 at 5413.343 kb on - strand, within Pf6N2E2_4679 at 5413.343 kb on - strand, within Pf6N2E2_4679 at 5413.393 kb on + strand, within Pf6N2E2_4679 at 5413.642 kb on + strand at 5413.642 kb on + strand at 5413.657 kb on + strand at 5413.658 kb on - strand at 5413.658 kb on - strand at 5413.704 kb on + strand at 5413.704 kb on + strand at 5413.704 kb on + strand at 5413.704 kb on + strand at 5413.704 kb on + strand at 5413.704 kb on + strand at 5413.704 kb on + strand at 5413.705 kb on - strand at 5413.705 kb on - strand at 5413.705 kb on - strand at 5413.705 kb on - strand at 5413.705 kb on - strand at 5413.705 kb on - strand at 5413.705 kb on - strand at 5413.737 kb on + strand at 5413.737 kb on + strand at 5413.738 kb on - strand at 5413.739 kb on + strand at 5413.740 kb on - strand at 5413.827 kb on + strand at 5413.827 kb on + strand at 5413.827 kb on + strand at 5413.828 kb on - strand, within Pf6N2E2_4680 at 5413.828 kb on - strand, within Pf6N2E2_4680 at 5413.828 kb on - strand, within Pf6N2E2_4680 at 5413.834 kb on - strand, within Pf6N2E2_4680 at 5413.986 kb on + strand, within Pf6N2E2_4680 at 5413.987 kb on - strand, within Pf6N2E2_4680 at 5414.388 kb on + strand at 5414.388 kb on + strand at 5414.388 kb on + strand at 5414.388 kb on + strand at 5414.388 kb on + strand at 5414.388 kb on + strand at 5414.388 kb on + strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.401 kb on + strand at 5414.402 kb on - strand at 5414.448 kb on + strand at 5414.449 kb on - strand at 5414.491 kb on + strand at 5414.491 kb on + strand at 5414.529 kb on + strand at 5414.529 kb on + strand at 5414.529 kb on + strand at 5414.530 kb on - strand at 5414.530 kb on - strand at 5414.594 kb on + strand at 5414.594 kb on + strand at 5414.594 kb on + strand at 5414.595 kb on - strand at 5414.595 kb on - strand at 5414.595 kb on - strand at 5414.595 kb on - strand at 5414.595 kb on - strand at 5414.596 kb on + strand at 5414.596 kb on + strand at 5414.596 kb on + strand at 5414.596 kb on + strand at 5414.596 kb on + strand at 5414.596 kb on + strand at 5414.596 kb on + strand at 5414.596 kb on + strand at 5414.597 kb on - strand at 5414.597 kb on - strand at 5414.597 kb on - strand at 5414.623 kb on - strand at 5414.636 kb on - strand at 5414.645 kb on - strand at 5414.645 kb on - strand at 5414.645 kb on - strand at 5414.645 kb on - strand at 5414.665 kb on + strand at 5414.665 kb on + strand at 5414.666 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction molybdate 0.25 M remove 5,411,384 + Pf6N2E2_4677 0.64 -1.5 5,411,385 - Pf6N2E2_4677 0.64 -0.8 5,411,497 + Pf6N2E2_4677 0.70 +0.2 5,411,498 - Pf6N2E2_4677 0.70 -0.1 5,411,625 - Pf6N2E2_4677 0.78 -0.2 5,411,625 - Pf6N2E2_4677 0.78 -1.0 5,411,642 + Pf6N2E2_4677 0.79 -0.3 5,411,642 + Pf6N2E2_4677 0.79 +0.1 5,411,643 - Pf6N2E2_4677 0.79 -0.8 5,411,643 - Pf6N2E2_4677 0.79 +0.8 5,411,643 - Pf6N2E2_4677 0.79 +0.0 5,411,684 + Pf6N2E2_4677 0.81 -2.5 5,411,685 - Pf6N2E2_4677 0.81 -0.9 5,411,708 + Pf6N2E2_4677 0.83 +0.3 5,411,708 + Pf6N2E2_4677 0.83 +0.1 5,411,708 + Pf6N2E2_4677 0.83 +0.2 5,411,708 + Pf6N2E2_4677 0.83 -1.5 5,411,708 + Pf6N2E2_4677 0.83 -0.8 5,411,708 + Pf6N2E2_4677 0.83 +0.0 5,411,708 + Pf6N2E2_4677 0.83 +0.4 5,411,708 + Pf6N2E2_4677 0.83 -0.8 5,411,709 - Pf6N2E2_4677 0.83 +1.3 5,411,709 - Pf6N2E2_4677 0.83 +1.0 5,411,709 - Pf6N2E2_4677 0.83 -0.1 5,411,709 - Pf6N2E2_4677 0.83 +0.2 5,411,709 - Pf6N2E2_4677 0.83 -0.2 5,411,805 - Pf6N2E2_4677 0.88 -0.7 5,411,981 + -0.5 5,411,981 + -0.3 5,411,982 - +0.1 5,411,989 + +0.1 5,411,989 + +0.5 5,411,990 - +0.8 5,412,099 - Pf6N2E2_4678 0.45 +0.1 5,412,249 + -0.7 5,412,319 + -0.2 5,412,375 - Pf6N2E2_4679 0.11 +1.3 5,412,493 + Pf6N2E2_4679 0.19 +0.5 5,412,494 - Pf6N2E2_4679 0.19 -0.1 5,412,668 - Pf6N2E2_4679 0.31 +0.8 5,412,668 - Pf6N2E2_4679 0.31 +1.7 5,412,668 - Pf6N2E2_4679 0.31 -0.2 5,412,847 + Pf6N2E2_4679 0.43 -0.0 5,412,847 + Pf6N2E2_4679 0.43 -2.3 5,412,847 + Pf6N2E2_4679 0.43 +0.2 5,412,848 - Pf6N2E2_4679 0.43 -1.3 5,412,848 - Pf6N2E2_4679 0.43 -0.2 5,413,111 + Pf6N2E2_4679 0.61 +0.7 5,413,112 - Pf6N2E2_4679 0.61 +0.9 5,413,112 - Pf6N2E2_4679 0.61 +1.5 5,413,112 - Pf6N2E2_4679 0.61 +1.5 5,413,251 + Pf6N2E2_4679 0.70 +0.9 5,413,251 + Pf6N2E2_4679 0.70 +0.9 5,413,251 + Pf6N2E2_4679 0.70 -0.4 5,413,276 + Pf6N2E2_4679 0.72 -1.0 5,413,276 + Pf6N2E2_4679 0.72 +0.1 5,413,339 + Pf6N2E2_4679 0.76 -0.1 5,413,339 + Pf6N2E2_4679 0.76 +0.7 5,413,339 + Pf6N2E2_4679 0.76 +1.2 5,413,340 - Pf6N2E2_4679 0.77 +0.8 5,413,340 - Pf6N2E2_4679 0.77 -0.4 5,413,342 + Pf6N2E2_4679 0.77 -0.9 5,413,343 - Pf6N2E2_4679 0.77 +1.5 5,413,343 - Pf6N2E2_4679 0.77 +1.1 5,413,343 - Pf6N2E2_4679 0.77 +1.0 5,413,343 - Pf6N2E2_4679 0.77 +1.6 5,413,343 - Pf6N2E2_4679 0.77 +1.3 5,413,393 + Pf6N2E2_4679 0.80 +1.8 5,413,642 + +0.0 5,413,642 + +1.5 5,413,657 + -0.3 5,413,658 - +1.5 5,413,658 - -0.1 5,413,704 + +1.8 5,413,704 + +0.6 5,413,704 + -0.2 5,413,704 + +1.6 5,413,704 + +1.9 5,413,704 + +0.4 5,413,704 + -1.5 5,413,705 - +0.8 5,413,705 - +0.2 5,413,705 - +1.3 5,413,705 - -0.2 5,413,705 - -0.2 5,413,705 - +0.2 5,413,705 - +0.9 5,413,737 + +0.8 5,413,737 + +0.1 5,413,738 - -0.8 5,413,739 + +0.9 5,413,740 - +0.3 5,413,827 + +0.3 5,413,827 + +0.0 5,413,827 + +0.9 5,413,828 - Pf6N2E2_4680 0.10 +0.3 5,413,828 - Pf6N2E2_4680 0.10 +0.3 5,413,828 - Pf6N2E2_4680 0.10 +1.3 5,413,834 - Pf6N2E2_4680 0.11 +0.1 5,413,986 + Pf6N2E2_4680 0.35 +1.1 5,413,987 - Pf6N2E2_4680 0.36 +0.8 5,414,388 + +1.6 5,414,388 + +1.7 5,414,388 + +0.8 5,414,388 + +1.3 5,414,388 + -1.1 5,414,388 + +0.7 5,414,388 + +0.3 5,414,389 - -0.0 5,414,389 - -0.7 5,414,389 - +0.4 5,414,389 - -0.9 5,414,389 - +0.4 5,414,389 - -1.8 5,414,389 - -0.5 5,414,389 - +0.4 5,414,389 - +1.8 5,414,389 - +0.9 5,414,389 - +1.6 5,414,401 + +0.1 5,414,402 - -1.2 5,414,448 + +0.7 5,414,449 - +0.8 5,414,491 + -0.9 5,414,491 + -0.4 5,414,529 + +1.6 5,414,529 + +0.8 5,414,529 + +0.0 5,414,530 - +1.0 5,414,530 - -0.4 5,414,594 + +0.1 5,414,594 + -0.1 5,414,594 + -2.7 5,414,595 - -0.9 5,414,595 - -1.3 5,414,595 - +0.5 5,414,595 - +0.2 5,414,595 - -0.2 5,414,596 + +1.0 5,414,596 + +0.0 5,414,596 + -0.3 5,414,596 + -1.4 5,414,596 + +1.2 5,414,596 + -1.6 5,414,596 + +1.5 5,414,596 + +0.8 5,414,597 - -0.1 5,414,597 - -0.0 5,414,597 - -0.9 5,414,623 - -0.2 5,414,636 - +0.9 5,414,645 - -0.0 5,414,645 - +0.3 5,414,645 - -0.2 5,414,645 - +1.2 5,414,665 + +0.8 5,414,665 + -0.2 5,414,666 - +0.1
Or see this region's nucleotide sequence