Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3041

Experiment: molybdate 0.25 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_3039 and Pf6N2E2_3040 overlap by 1 nucleotidesPf6N2E2_3040 and Pf6N2E2_3041 overlap by 13 nucleotidesPf6N2E2_3041 and Pf6N2E2_3042 overlap by 4 nucleotidesPf6N2E2_3042 and Pf6N2E2_3043 are separated by 43 nucleotides Pf6N2E2_3039 - Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77), at 3,523,850 to 3,524,527 _3039 Pf6N2E2_3040 - 5-nucleotidase SurE (EC 3.1.3.5), at 3,524,527 to 3,525,276 _3040 Pf6N2E2_3041 - tRNA pseudouridine 13 synthase (EC 4.2.1.-), at 3,525,264 to 3,526,322 _3041 Pf6N2E2_3042 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12), at 3,526,319 to 3,526,792 _3042 Pf6N2E2_3043 - S-formylglutathione hydrolase (EC 3.1.2.12), at 3,526,836 to 3,527,681 _3043 Position (kb) 3525 3526 3527Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3524.298 kb on + strand, within Pf6N2E2_3039at 3524.298 kb on + strand, within Pf6N2E2_3039at 3524.298 kb on + strand, within Pf6N2E2_3039at 3524.298 kb on + strand, within Pf6N2E2_3039at 3524.298 kb on + strand, within Pf6N2E2_3039at 3524.298 kb on + strand, within Pf6N2E2_3039at 3524.298 kb on + strand, within Pf6N2E2_3039at 3524.298 kb on + strand, within Pf6N2E2_3039at 3524.298 kb on + strand, within Pf6N2E2_3039at 3524.298 kb on + strand, within Pf6N2E2_3039at 3524.299 kb on - strand, within Pf6N2E2_3039at 3524.299 kb on - strand, within Pf6N2E2_3039at 3524.299 kb on - strand, within Pf6N2E2_3039at 3524.299 kb on - strand, within Pf6N2E2_3039at 3524.299 kb on - strand, within Pf6N2E2_3039at 3524.299 kb on - strand, within Pf6N2E2_3039at 3524.299 kb on - strand, within Pf6N2E2_3039at 3524.299 kb on - strand, within Pf6N2E2_3039at 3524.396 kb on - strand, within Pf6N2E2_3039at 3524.442 kb on + strand, within Pf6N2E2_3039at 3524.443 kb on - strand, within Pf6N2E2_3039at 3524.580 kb on + strandat 3524.581 kb on - strandat 3524.612 kb on + strand, within Pf6N2E2_3040at 3524.612 kb on + strand, within Pf6N2E2_3040at 3524.612 kb on + strand, within Pf6N2E2_3040at 3524.612 kb on + strand, within Pf6N2E2_3040at 3524.612 kb on + strand, within Pf6N2E2_3040at 3524.612 kb on + strand, within Pf6N2E2_3040at 3524.612 kb on + strand, within Pf6N2E2_3040at 3524.612 kb on + strand, within Pf6N2E2_3040at 3524.613 kb on - strand, within Pf6N2E2_3040at 3524.613 kb on - strand, within Pf6N2E2_3040at 3524.613 kb on - strand, within Pf6N2E2_3040at 3524.613 kb on - strand, within Pf6N2E2_3040at 3524.613 kb on - strand, within Pf6N2E2_3040at 3524.613 kb on - strand, within Pf6N2E2_3040at 3524.613 kb on - strand, within Pf6N2E2_3040at 3524.613 kb on - strand, within Pf6N2E2_3040at 3524.613 kb on - strand, within Pf6N2E2_3040at 3524.972 kb on + strand, within Pf6N2E2_3040at 3524.973 kb on - strand, within Pf6N2E2_3040at 3524.973 kb on - strand, within Pf6N2E2_3040at 3525.009 kb on + strand, within Pf6N2E2_3040at 3525.082 kb on - strand, within Pf6N2E2_3040at 3525.113 kb on + strand, within Pf6N2E2_3040at 3525.219 kb on - strandat 3525.219 kb on - strandat 3525.270 kb on + strandat 3525.270 kb on + strandat 3525.271 kb on - strandat 3525.271 kb on - strandat 3525.326 kb on - strandat 3525.453 kb on + strand, within Pf6N2E2_3041at 3525.454 kb on - strand, within Pf6N2E2_3041at 3525.454 kb on - strand, within Pf6N2E2_3041at 3525.747 kb on + strand, within Pf6N2E2_3041at 3525.747 kb on + strand, within Pf6N2E2_3041at 3525.748 kb on - strand, within Pf6N2E2_3041at 3525.748 kb on - strand, within Pf6N2E2_3041at 3525.841 kb on + strand, within Pf6N2E2_3041at 3525.842 kb on - strand, within Pf6N2E2_3041at 3525.926 kb on + strand, within Pf6N2E2_3041at 3525.926 kb on + strand, within Pf6N2E2_3041at 3526.096 kb on + strand, within Pf6N2E2_3041at 3526.264 kb on - strandat 3526.828 kb on + strandat 3526.829 kb on - strandat 3526.845 kb on + strandat 3526.845 kb on + strandat 3526.846 kb on - strandat 3526.900 kb on + strandat 3526.900 kb on + strandat 3526.901 kb on - strandat 3526.901 kb on - strandat 3526.901 kb on - strandat 3526.901 kb on - strandat 3526.901 kb on - strandat 3526.901 kb on - strandat 3526.901 kb on - strandat 3526.913 kb on - strandat 3527.308 kb on + strand, within Pf6N2E2_3043at 3527.308 kb on + strand, within Pf6N2E2_3043at 3527.308 kb on + strand, within Pf6N2E2_3043at 3527.308 kb on + strand, within Pf6N2E2_3043at 3527.308 kb on + strand, within Pf6N2E2_3043at 3527.308 kb on + strand, within Pf6N2E2_3043at 3527.309 kb on - strand, within Pf6N2E2_3043at 3527.309 kb on - strand, within Pf6N2E2_3043at 3527.309 kb on - strand, within Pf6N2E2_3043at 3527.309 kb on - strand, within Pf6N2E2_3043

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
remove
3,524,298 + Pf6N2E2_3039 0.66 -2.3
3,524,298 + Pf6N2E2_3039 0.66 -3.8
3,524,298 + Pf6N2E2_3039 0.66 -1.8
3,524,298 + Pf6N2E2_3039 0.66 -0.9
3,524,298 + Pf6N2E2_3039 0.66 -0.7
3,524,298 + Pf6N2E2_3039 0.66 -3.2
3,524,298 + Pf6N2E2_3039 0.66 -2.6
3,524,298 + Pf6N2E2_3039 0.66 -3.4
3,524,298 + Pf6N2E2_3039 0.66 -2.7
3,524,298 + Pf6N2E2_3039 0.66 -1.3
3,524,299 - Pf6N2E2_3039 0.66 +0.2
3,524,299 - Pf6N2E2_3039 0.66 +1.3
3,524,299 - Pf6N2E2_3039 0.66 +2.1
3,524,299 - Pf6N2E2_3039 0.66 +0.6
3,524,299 - Pf6N2E2_3039 0.66 +0.9
3,524,299 - Pf6N2E2_3039 0.66 +0.4
3,524,299 - Pf6N2E2_3039 0.66 +0.8
3,524,299 - Pf6N2E2_3039 0.66 +1.4
3,524,396 - Pf6N2E2_3039 0.81 -0.5
3,524,442 + Pf6N2E2_3039 0.87 -2.7
3,524,443 - Pf6N2E2_3039 0.87 +1.3
3,524,580 + -1.8
3,524,581 - +0.2
3,524,612 + Pf6N2E2_3040 0.11 -2.5
3,524,612 + Pf6N2E2_3040 0.11 -1.1
3,524,612 + Pf6N2E2_3040 0.11 -1.3
3,524,612 + Pf6N2E2_3040 0.11 -1.8
3,524,612 + Pf6N2E2_3040 0.11 -2.2
3,524,612 + Pf6N2E2_3040 0.11 -0.9
3,524,612 + Pf6N2E2_3040 0.11 -1.4
3,524,612 + Pf6N2E2_3040 0.11 -1.5
3,524,613 - Pf6N2E2_3040 0.11 +1.4
3,524,613 - Pf6N2E2_3040 0.11 +1.1
3,524,613 - Pf6N2E2_3040 0.11 +2.4
3,524,613 - Pf6N2E2_3040 0.11 +1.4
3,524,613 - Pf6N2E2_3040 0.11 -0.4
3,524,613 - Pf6N2E2_3040 0.11 +0.1
3,524,613 - Pf6N2E2_3040 0.11 +1.1
3,524,613 - Pf6N2E2_3040 0.11 +0.1
3,524,613 - Pf6N2E2_3040 0.11 -0.6
3,524,972 + Pf6N2E2_3040 0.59 -1.3
3,524,973 - Pf6N2E2_3040 0.59 -1.5
3,524,973 - Pf6N2E2_3040 0.59 +1.3
3,525,009 + Pf6N2E2_3040 0.64 -1.6
3,525,082 - Pf6N2E2_3040 0.74 -1.0
3,525,113 + Pf6N2E2_3040 0.78 -2.5
3,525,219 - -1.1
3,525,219 - -2.2
3,525,270 + -3.2
3,525,270 + +1.9
3,525,271 - -1.4
3,525,271 - -3.8
3,525,326 - +0.5
3,525,453 + Pf6N2E2_3041 0.18 -1.2
3,525,454 - Pf6N2E2_3041 0.18 +1.1
3,525,454 - Pf6N2E2_3041 0.18 -1.2
3,525,747 + Pf6N2E2_3041 0.46 +0.2
3,525,747 + Pf6N2E2_3041 0.46 -0.4
3,525,748 - Pf6N2E2_3041 0.46 +1.1
3,525,748 - Pf6N2E2_3041 0.46 +1.5
3,525,841 + Pf6N2E2_3041 0.54 -0.7
3,525,842 - Pf6N2E2_3041 0.55 -0.7
3,525,926 + Pf6N2E2_3041 0.63 -2.5
3,525,926 + Pf6N2E2_3041 0.63 -0.2
3,526,096 + Pf6N2E2_3041 0.79 +0.2
3,526,264 - -0.2
3,526,828 + +0.1
3,526,829 - -0.1
3,526,845 + +0.1
3,526,845 + +0.3
3,526,846 - -0.3
3,526,900 + +0.4
3,526,900 + +0.7
3,526,901 - +1.6
3,526,901 - +0.6
3,526,901 - +0.4
3,526,901 - +1.6
3,526,901 - +0.6
3,526,901 - +0.8
3,526,901 - +1.9
3,526,913 - +0.5
3,527,308 + Pf6N2E2_3043 0.56 -0.1
3,527,308 + Pf6N2E2_3043 0.56 -1.3
3,527,308 + Pf6N2E2_3043 0.56 +0.4
3,527,308 + Pf6N2E2_3043 0.56 +0.2
3,527,308 + Pf6N2E2_3043 0.56 -0.2
3,527,308 + Pf6N2E2_3043 0.56 +0.3
3,527,309 - Pf6N2E2_3043 0.56 +1.8
3,527,309 - Pf6N2E2_3043 0.56 -0.7
3,527,309 - Pf6N2E2_3043 0.56 -1.0
3,527,309 - Pf6N2E2_3043 0.56 +1.0

Or see this region's nucleotide sequence