Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09695

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09690 and BWI76_RS09695 are separated by 274 nucleotidesBWI76_RS09695 and BWI76_RS09700 are separated by 42 nucleotidesBWI76_RS09700 and BWI76_RS09705 are separated by 42 nucleotides BWI76_RS09690: BWI76_RS09690 - dimethyl sulfoxide reductase, at 2,031,761 to 2,032,624 _RS09690 BWI76_RS09695: BWI76_RS09695 - MFS transporter, at 2,032,899 to 2,034,047 _RS09695 BWI76_RS09700: BWI76_RS09700 - PTS IIA-like nitrogen-regulatory protein PtsN, at 2,034,090 to 2,034,527 _RS09700 BWI76_RS09705: BWI76_RS09705 - transketolase, at 2,034,570 to 2,035,481 _RS09705 Position (kb) 2032 2033 2034 2035Strain fitness (log2 ratio) -1 0 1 2at 2032.470 kb on - strand, within BWI76_RS09690at 2032.503 kb on - strand, within BWI76_RS09690at 2032.643 kb on + strandat 2032.881 kb on + strandat 2032.889 kb on + strandat 2032.906 kb on + strandat 2032.920 kb on + strandat 2033.157 kb on + strand, within BWI76_RS09695at 2033.255 kb on + strand, within BWI76_RS09695at 2033.485 kb on + strand, within BWI76_RS09695at 2033.644 kb on + strand, within BWI76_RS09695at 2033.706 kb on + strand, within BWI76_RS09695at 2033.714 kb on - strand, within BWI76_RS09695at 2033.887 kb on + strand, within BWI76_RS09695at 2034.049 kb on - strandat 2034.370 kb on - strand, within BWI76_RS09700at 2034.588 kb on - strandat 2034.588 kb on - strandat 2034.774 kb on + strand, within BWI76_RS09705at 2035.011 kb on + strand, within BWI76_RS09705at 2035.019 kb on - strand, within BWI76_RS09705at 2035.019 kb on - strand, within BWI76_RS09705

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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2,032,470 - BWI76_RS09690 0.82 +1.5
2,032,503 - BWI76_RS09690 0.86 +0.3
2,032,643 + -0.1
2,032,881 + -0.3
2,032,889 + -0.6
2,032,906 + +2.6
2,032,920 + -0.0
2,033,157 + BWI76_RS09695 0.22 -0.4
2,033,255 + BWI76_RS09695 0.31 +1.3
2,033,485 + BWI76_RS09695 0.51 +0.2
2,033,644 + BWI76_RS09695 0.65 +0.4
2,033,706 + BWI76_RS09695 0.70 -0.1
2,033,714 - BWI76_RS09695 0.71 +0.4
2,033,887 + BWI76_RS09695 0.86 +0.3
2,034,049 - +1.0
2,034,370 - BWI76_RS09700 0.64 -0.3
2,034,588 - -0.5
2,034,588 - +0.0
2,034,774 + BWI76_RS09705 0.22 -0.6
2,035,011 + BWI76_RS09705 0.48 -0.9
2,035,019 - BWI76_RS09705 0.49 -0.0
2,035,019 - BWI76_RS09705 0.49 +0.3

Or see this region's nucleotide sequence