Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09385

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09370 and BWI76_RS09375 are separated by 52 nucleotidesBWI76_RS09375 and BWI76_RS09380 are separated by 14 nucleotidesBWI76_RS09380 and BWI76_RS09385 overlap by 8 nucleotidesBWI76_RS09385 and BWI76_RS09390 overlap by 4 nucleotidesBWI76_RS09390 and BWI76_RS09395 overlap by 4 nucleotides BWI76_RS09370: BWI76_RS09370 - major tail tube protein, at 1,966,670 to 1,967,185 _RS09370 BWI76_RS09375: BWI76_RS09375 - phage tail protein, at 1,967,238 to 1,967,537 _RS09375 BWI76_RS09380: BWI76_RS09380 - GpE family phage tail protein, at 1,967,552 to 1,967,671 _RS09380 BWI76_RS09385: BWI76_RS09385 - phage tail tape measure protein, at 1,967,664 to 1,970,291 _RS09385 BWI76_RS09390: BWI76_RS09390 - phage tail protein, at 1,970,288 to 1,970,773 _RS09390 BWI76_RS09395: BWI76_RS09395 - late control gene D protein, at 1,970,770 to 1,971,855 _RS09395 Position (kb) 1967 1968 1969 1970 1971Strain fitness (log2 ratio) -1 0 1 2at 1966.667 kb on + strandat 1966.667 kb on + strandat 1967.185 kb on + strandat 1967.347 kb on + strand, within BWI76_RS09375at 1967.482 kb on + strand, within BWI76_RS09375at 1967.746 kb on + strandat 1968.142 kb on - strand, within BWI76_RS09385at 1968.321 kb on + strand, within BWI76_RS09385at 1968.606 kb on + strand, within BWI76_RS09385at 1968.613 kb on - strand, within BWI76_RS09385at 1969.478 kb on - strand, within BWI76_RS09385at 1969.623 kb on - strand, within BWI76_RS09385at 1969.623 kb on - strand, within BWI76_RS09385at 1969.717 kb on - strand, within BWI76_RS09385at 1970.375 kb on + strand, within BWI76_RS09390at 1970.560 kb on - strand, within BWI76_RS09390at 1970.642 kb on + strand, within BWI76_RS09390at 1970.698 kb on + strand, within BWI76_RS09390at 1970.770 kb on - strandat 1970.812 kb on + strandat 1971.182 kb on + strand, within BWI76_RS09395at 1971.190 kb on - strand, within BWI76_RS09395

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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1,966,667 + -0.2
1,966,667 + -0.9
1,967,185 + +0.3
1,967,347 + BWI76_RS09375 0.36 -0.1
1,967,482 + BWI76_RS09375 0.81 -0.0
1,967,746 + -0.2
1,968,142 - BWI76_RS09385 0.18 +0.6
1,968,321 + BWI76_RS09385 0.25 +0.3
1,968,606 + BWI76_RS09385 0.36 +0.3
1,968,613 - BWI76_RS09385 0.36 +0.5
1,969,478 - BWI76_RS09385 0.69 +0.3
1,969,623 - BWI76_RS09385 0.75 +0.3
1,969,623 - BWI76_RS09385 0.75 +1.4
1,969,717 - BWI76_RS09385 0.78 +0.5
1,970,375 + BWI76_RS09390 0.18 +0.5
1,970,560 - BWI76_RS09390 0.56 +0.0
1,970,642 + BWI76_RS09390 0.73 +0.5
1,970,698 + BWI76_RS09390 0.84 +0.4
1,970,770 - -0.6
1,970,812 + +0.2
1,971,182 + BWI76_RS09395 0.38 +0.1
1,971,190 - BWI76_RS09395 0.39 +2.7

Or see this region's nucleotide sequence