Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00570

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00555 and BWI76_RS00560 overlap by 4 nucleotidesBWI76_RS00560 and BWI76_RS00565 are separated by 90 nucleotidesBWI76_RS00565 and BWI76_RS00570 overlap by 1 nucleotidesBWI76_RS00570 and BWI76_RS00575 are separated by 100 nucleotidesBWI76_RS00575 and BWI76_RS00580 are separated by 229 nucleotides BWI76_RS00555: BWI76_RS00555 - PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN, at 112,748 to 113,185 _RS00555 BWI76_RS00560: BWI76_RS00560 - hypothetical protein, at 113,182 to 113,736 _RS00560 BWI76_RS00565: BWI76_RS00565 - branched-chain amino acid transport, at 113,827 to 114,150 _RS00565 BWI76_RS00570: BWI76_RS00570 - AzlC family protein, at 114,150 to 114,809 _RS00570 BWI76_RS00575: BWI76_RS00575 - DNA-binding protein, at 114,910 to 115,458 _RS00575 BWI76_RS00580: BWI76_RS00580 - ribokinase, at 115,688 to 116,899 _RS00580 Position (kb) 114 115Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 113.157 kb on + strandat 113.157 kb on + strandat 113.165 kb on - strandat 113.165 kb on - strandat 113.168 kb on - strandat 113.179 kb on + strandat 113.179 kb on + strandat 113.187 kb on - strandat 113.193 kb on + strandat 113.309 kb on + strand, within BWI76_RS00560at 113.346 kb on + strand, within BWI76_RS00560at 113.540 kb on + strand, within BWI76_RS00560at 113.590 kb on - strand, within BWI76_RS00560at 113.686 kb on + strandat 113.702 kb on - strandat 113.970 kb on + strand, within BWI76_RS00565at 113.970 kb on + strand, within BWI76_RS00565at 113.996 kb on + strand, within BWI76_RS00565at 114.014 kb on - strand, within BWI76_RS00565at 114.032 kb on + strand, within BWI76_RS00565at 114.255 kb on + strand, within BWI76_RS00570at 114.255 kb on + strand, within BWI76_RS00570at 114.448 kb on - strand, within BWI76_RS00570at 114.461 kb on + strand, within BWI76_RS00570at 114.539 kb on + strand, within BWI76_RS00570at 114.547 kb on - strand, within BWI76_RS00570at 114.547 kb on - strand, within BWI76_RS00570at 114.547 kb on - strand, within BWI76_RS00570at 114.646 kb on - strand, within BWI76_RS00570at 114.679 kb on - strand, within BWI76_RS00570at 114.704 kb on - strand, within BWI76_RS00570at 114.718 kb on + strand, within BWI76_RS00570at 114.726 kb on - strand, within BWI76_RS00570at 114.761 kb on - strandat 114.775 kb on - strandat 114.911 kb on - strandat 114.916 kb on - strandat 114.967 kb on + strand, within BWI76_RS00575at 115.127 kb on - strand, within BWI76_RS00575at 115.231 kb on + strand, within BWI76_RS00575at 115.301 kb on + strand, within BWI76_RS00575at 115.312 kb on + strand, within BWI76_RS00575at 115.312 kb on + strand, within BWI76_RS00575at 115.320 kb on - strand, within BWI76_RS00575at 115.355 kb on + strand, within BWI76_RS00575at 115.377 kb on - strand, within BWI76_RS00575at 115.385 kb on - strand, within BWI76_RS00575at 115.395 kb on + strand, within BWI76_RS00575at 115.403 kb on + strand, within BWI76_RS00575at 115.420 kb on - strandat 115.425 kb on + strandat 115.427 kb on + strandat 115.427 kb on + strandat 115.427 kb on + strandat 115.427 kb on + strandat 115.427 kb on + strandat 115.435 kb on - strandat 115.435 kb on - strandat 115.435 kb on - strandat 115.435 kb on - strandat 115.437 kb on + strandat 115.437 kb on + strandat 115.437 kb on + strandat 115.437 kb on + strandat 115.445 kb on - strandat 115.445 kb on - strandat 115.445 kb on - strandat 115.445 kb on - strandat 115.445 kb on - strandat 115.445 kb on - strandat 115.445 kb on - strandat 115.452 kb on + strandat 115.460 kb on - strandat 115.498 kb on + strandat 115.498 kb on + strandat 115.498 kb on + strandat 115.500 kb on + strandat 115.506 kb on - strandat 115.506 kb on - strandat 115.508 kb on + strandat 115.508 kb on - strandat 115.516 kb on - strandat 115.533 kb on + strandat 115.545 kb on + strandat 115.623 kb on + strandat 115.623 kb on + strandat 115.623 kb on + strandat 115.623 kb on + strandat 115.623 kb on + strandat 115.623 kb on + strandat 115.628 kb on + strandat 115.629 kb on + strandat 115.631 kb on - strandat 115.631 kb on - strandat 115.631 kb on - strandat 115.635 kb on + strandat 115.635 kb on + strandat 115.635 kb on + strandat 115.637 kb on + strandat 115.637 kb on + strandat 115.637 kb on + strandat 115.637 kb on + strandat 115.637 kb on + strandat 115.637 kb on + strandat 115.637 kb on + strandat 115.637 kb on + strandat 115.637 kb on + strandat 115.642 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on + strandat 115.643 kb on - strandat 115.643 kb on - strandat 115.643 kb on - strandat 115.643 kb on - strandat 115.645 kb on + strandat 115.645 kb on + strandat 115.645 kb on + strandat 115.645 kb on + strandat 115.645 kb on - strandat 115.645 kb on - strandat 115.645 kb on - strandat 115.645 kb on - strandat 115.645 kb on - strandat 115.650 kb on - strandat 115.650 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.651 kb on - strandat 115.653 kb on + strandat 115.653 kb on + strandat 115.653 kb on + strandat 115.653 kb on + strandat 115.653 kb on - strandat 115.653 kb on - strandat 115.653 kb on - strandat 115.653 kb on - strandat 115.653 kb on - strandat 115.653 kb on - strandat 115.653 kb on - strandat 115.654 kb on + strandat 115.654 kb on + strandat 115.654 kb on + strandat 115.654 kb on + strandat 115.654 kb on + strandat 115.657 kb on + strandat 115.662 kb on - strandat 115.662 kb on - strandat 115.662 kb on - strandat 115.662 kb on - strandat 115.665 kb on - strandat 115.665 kb on - strandat 115.669 kb on + strandat 115.670 kb on - strandat 115.725 kb on + strandat 115.804 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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113,157 + -0.4
113,157 + +0.9
113,165 - +0.6
113,165 - -0.7
113,168 - -0.2
113,179 + +0.2
113,179 + +1.0
113,187 - +0.6
113,193 + -0.2
113,309 + BWI76_RS00560 0.23 +0.4
113,346 + BWI76_RS00560 0.30 +0.5
113,540 + BWI76_RS00560 0.65 +0.0
113,590 - BWI76_RS00560 0.74 -0.1
113,686 + -0.0
113,702 - -0.4
113,970 + BWI76_RS00565 0.44 +0.1
113,970 + BWI76_RS00565 0.44 -0.5
113,996 + BWI76_RS00565 0.52 +1.1
114,014 - BWI76_RS00565 0.58 -3.2
114,032 + BWI76_RS00565 0.63 -0.2
114,255 + BWI76_RS00570 0.16 -0.1
114,255 + BWI76_RS00570 0.16 +0.3
114,448 - BWI76_RS00570 0.45 -0.2
114,461 + BWI76_RS00570 0.47 +0.8
114,539 + BWI76_RS00570 0.59 +0.3
114,547 - BWI76_RS00570 0.60 +0.8
114,547 - BWI76_RS00570 0.60 +0.7
114,547 - BWI76_RS00570 0.60 +0.8
114,646 - BWI76_RS00570 0.75 +0.1
114,679 - BWI76_RS00570 0.80 +1.0
114,704 - BWI76_RS00570 0.84 +0.1
114,718 + BWI76_RS00570 0.86 +0.5
114,726 - BWI76_RS00570 0.87 +2.0
114,761 - +0.7
114,775 - +0.1
114,911 - +0.3
114,916 - +0.1
114,967 + BWI76_RS00575 0.10 +0.2
115,127 - BWI76_RS00575 0.40 -2.4
115,231 + BWI76_RS00575 0.58 -0.0
115,301 + BWI76_RS00575 0.71 +0.1
115,312 + BWI76_RS00575 0.73 +0.0
115,312 + BWI76_RS00575 0.73 -0.4
115,320 - BWI76_RS00575 0.75 +0.5
115,355 + BWI76_RS00575 0.81 -0.1
115,377 - BWI76_RS00575 0.85 -0.6
115,385 - BWI76_RS00575 0.87 +1.0
115,395 + BWI76_RS00575 0.88 +0.1
115,403 + BWI76_RS00575 0.90 +0.7
115,420 - -0.2
115,425 + -0.8
115,427 + -0.1
115,427 + +1.2
115,427 + -1.3
115,427 + +0.2
115,427 + +0.2
115,435 - -0.8
115,435 - -0.6
115,435 - +2.5
115,435 - +0.3
115,437 + +0.6
115,437 + +1.4
115,437 + -0.7
115,437 + -0.0
115,445 - -0.1
115,445 - +3.3
115,445 - +0.4
115,445 - -0.5
115,445 - -0.9
115,445 - +0.6
115,445 - +0.4
115,452 + +0.2
115,460 - +1.0
115,498 + +0.9
115,498 + -0.0
115,498 + -0.2
115,500 + -0.0
115,506 - -0.3
115,506 - +0.1
115,508 + +0.0
115,508 - +0.9
115,516 - -0.9
115,533 + -0.4
115,545 + -0.0
115,623 + +0.1
115,623 + +0.3
115,623 + +0.7
115,623 + -2.7
115,623 + +1.1
115,623 + +0.6
115,628 + -1.1
115,629 + +0.3
115,631 - +0.5
115,631 - +1.5
115,631 - +1.8
115,635 + -0.7
115,635 + -0.1
115,635 + +0.9
115,637 + +0.6
115,637 + -0.5
115,637 + -0.0
115,637 + -0.1
115,637 + +0.0
115,637 + +0.2
115,637 + +0.9
115,637 + +0.2
115,637 + +0.3
115,642 + +0.3
115,643 + -0.5
115,643 + -0.0
115,643 + -1.5
115,643 + +2.1
115,643 + -0.2
115,643 + -0.5
115,643 + +1.0
115,643 + +0.2
115,643 + +0.2
115,643 + -0.4
115,643 + +0.0
115,643 + -0.1
115,643 + -0.1
115,643 + +1.1
115,643 + +0.2
115,643 + -0.6
115,643 + -0.1
115,643 + -0.7
115,643 + -0.4
115,643 + -0.0
115,643 + -0.7
115,643 + +0.6
115,643 + +0.6
115,643 + +0.3
115,643 + +0.6
115,643 + -1.0
115,643 + +0.3
115,643 + +1.3
115,643 + +0.2
115,643 + +0.0
115,643 + -1.0
115,643 + -0.5
115,643 + -0.2
115,643 + -1.9
115,643 + +1.2
115,643 + +0.0
115,643 + +0.3
115,643 + -0.2
115,643 + -0.0
115,643 + +0.8
115,643 + -1.0
115,643 + -0.1
115,643 + +0.2
115,643 + -0.4
115,643 + -0.0
115,643 + -0.6
115,643 + -0.0
115,643 + +0.7
115,643 + -0.0
115,643 + -0.2
115,643 + +0.2
115,643 + -1.3
115,643 + -1.1
115,643 + +0.2
115,643 + -0.7
115,643 + +0.4
115,643 + +0.4
115,643 + -0.2
115,643 + +1.3
115,643 + -0.0
115,643 + +0.1
115,643 + +0.7
115,643 + -0.5
115,643 + +0.4
115,643 - -0.1
115,643 - +0.4
115,643 - -0.0
115,643 - -0.1
115,645 + +1.0
115,645 + -0.2
115,645 + -0.3
115,645 + +0.3
115,645 - -0.2
115,645 - +0.3
115,645 - +0.3
115,645 - +0.6
115,645 - -0.4
115,650 - -1.1
115,650 - +1.7
115,651 - +0.9
115,651 - -0.3
115,651 - +3.1
115,651 - +0.5
115,651 - +1.0
115,651 - -0.1
115,651 - -0.3
115,651 - -0.7
115,651 - +0.0
115,651 - +0.0
115,651 - -0.2
115,651 - +0.8
115,651 - +0.4
115,651 - -0.9
115,651 - -0.3
115,651 - +0.4
115,651 - -0.5
115,651 - -0.3
115,651 - +0.6
115,651 - +0.8
115,651 - -0.2
115,651 - +0.0
115,651 - -0.5
115,651 - -0.2
115,651 - -0.1
115,651 - -0.1
115,651 - +0.2
115,651 - -0.1
115,651 - +1.5
115,651 - +0.4
115,651 - +1.1
115,651 - +0.1
115,651 - +0.8
115,651 - -0.2
115,651 - +0.6
115,651 - -0.6
115,651 - -0.3
115,651 - -0.9
115,651 - +0.6
115,651 - +1.9
115,651 - +1.3
115,651 - -0.5
115,653 + -0.1
115,653 + -0.5
115,653 + +0.3
115,653 + +0.0
115,653 - -0.9
115,653 - -0.8
115,653 - -0.6
115,653 - +2.4
115,653 - -0.1
115,653 - -0.3
115,653 - -0.5
115,654 + +0.1
115,654 + +0.3
115,654 + -0.2
115,654 + +0.4
115,654 + -0.8
115,657 + +0.4
115,662 - +0.0
115,662 - -0.2
115,662 - -0.8
115,662 - -0.1
115,665 - -1.2
115,665 - -0.7
115,669 + -1.3
115,670 - +0.2
115,725 + -0.3
115,804 + -0.0

Or see this region's nucleotide sequence