Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_206

Experiment: phosphite 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_204 and Pf6N2E2_205 overlap by 4 nucleotidesPf6N2E2_205 and Pf6N2E2_206 are separated by 32 nucleotidesPf6N2E2_206 and Pf6N2E2_207 are separated by 12 nucleotides Pf6N2E2_204 - hypothetical protein, at 255,923 to 256,330 _204 Pf6N2E2_205 - hypothetical protein, at 256,327 to 257,073 _205 Pf6N2E2_206 - Glycosyl transferase, group 2 family protein, at 257,106 to 258,128 _206 Pf6N2E2_207 - related to dolichyl-phosphate mannose synthase, at 258,141 to 260,522 _207 Position (kb) 257 258 259Strain fitness (log2 ratio) -2 -1 0 1 2 3at 256.321 kb on + strandat 256.478 kb on + strand, within Pf6N2E2_205at 256.478 kb on + strand, within Pf6N2E2_205at 256.479 kb on - strand, within Pf6N2E2_205at 256.562 kb on + strand, within Pf6N2E2_205at 256.562 kb on + strand, within Pf6N2E2_205at 256.563 kb on - strand, within Pf6N2E2_205at 256.563 kb on - strand, within Pf6N2E2_205at 256.563 kb on - strand, within Pf6N2E2_205at 256.659 kb on + strand, within Pf6N2E2_205at 256.661 kb on + strand, within Pf6N2E2_205at 256.661 kb on + strand, within Pf6N2E2_205at 256.882 kb on + strand, within Pf6N2E2_205at 256.883 kb on - strand, within Pf6N2E2_205at 256.892 kb on + strand, within Pf6N2E2_205at 256.956 kb on - strand, within Pf6N2E2_205at 257.148 kb on - strandat 257.305 kb on + strand, within Pf6N2E2_206at 257.305 kb on + strand, within Pf6N2E2_206at 257.306 kb on - strand, within Pf6N2E2_206at 257.306 kb on - strand, within Pf6N2E2_206at 257.306 kb on - strand, within Pf6N2E2_206at 257.387 kb on - strand, within Pf6N2E2_206at 257.389 kb on + strand, within Pf6N2E2_206at 257.390 kb on - strand, within Pf6N2E2_206at 257.395 kb on + strand, within Pf6N2E2_206at 257.395 kb on + strand, within Pf6N2E2_206at 257.395 kb on + strand, within Pf6N2E2_206at 257.396 kb on - strand, within Pf6N2E2_206at 257.459 kb on + strand, within Pf6N2E2_206at 257.459 kb on + strand, within Pf6N2E2_206at 257.761 kb on + strand, within Pf6N2E2_206at 257.761 kb on + strand, within Pf6N2E2_206at 257.850 kb on - strand, within Pf6N2E2_206at 258.004 kb on + strand, within Pf6N2E2_206at 258.004 kb on + strand, within Pf6N2E2_206at 258.004 kb on + strand, within Pf6N2E2_206at 258.004 kb on + strand, within Pf6N2E2_206at 258.004 kb on + strand, within Pf6N2E2_206at 258.004 kb on + strand, within Pf6N2E2_206at 258.005 kb on - strand, within Pf6N2E2_206at 258.005 kb on - strand, within Pf6N2E2_206at 258.005 kb on - strand, within Pf6N2E2_206at 258.005 kb on - strand, within Pf6N2E2_206at 258.005 kb on - strand, within Pf6N2E2_206at 258.028 kb on - strandat 258.048 kb on + strandat 258.048 kb on + strandat 258.049 kb on - strandat 258.050 kb on + strandat 258.051 kb on - strandat 258.051 kb on - strandat 258.051 kb on - strandat 258.199 kb on + strandat 258.199 kb on + strandat 258.199 kb on + strandat 258.199 kb on + strandat 258.199 kb on + strandat 258.200 kb on - strandat 258.200 kb on - strandat 258.383 kb on - strand, within Pf6N2E2_207at 258.383 kb on - strand, within Pf6N2E2_207at 258.463 kb on + strand, within Pf6N2E2_207at 258.464 kb on - strand, within Pf6N2E2_207at 258.577 kb on + strand, within Pf6N2E2_207at 258.578 kb on - strand, within Pf6N2E2_207at 258.730 kb on + strand, within Pf6N2E2_207at 258.861 kb on + strand, within Pf6N2E2_207at 258.862 kb on - strand, within Pf6N2E2_207at 258.862 kb on - strand, within Pf6N2E2_207at 258.862 kb on - strand, within Pf6N2E2_207at 258.862 kb on - strand, within Pf6N2E2_207at 258.862 kb on - strand, within Pf6N2E2_207at 258.865 kb on + strand, within Pf6N2E2_207at 258.865 kb on + strand, within Pf6N2E2_207at 258.865 kb on + strand, within Pf6N2E2_207at 258.865 kb on + strand, within Pf6N2E2_207at 258.865 kb on + strand, within Pf6N2E2_207at 258.866 kb on - strand, within Pf6N2E2_207at 258.916 kb on + strand, within Pf6N2E2_207at 258.919 kb on + strand, within Pf6N2E2_207at 258.920 kb on - strand, within Pf6N2E2_207at 258.920 kb on - strand, within Pf6N2E2_207at 259.060 kb on + strand, within Pf6N2E2_207at 259.060 kb on + strand, within Pf6N2E2_207at 259.061 kb on - strand, within Pf6N2E2_207

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Per-strain Table

Position Strand Gene LocusTag Fraction phosphite 0.25 M
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256,321 + +0.5
256,478 + Pf6N2E2_205 0.20 +0.3
256,478 + Pf6N2E2_205 0.20 +0.2
256,479 - Pf6N2E2_205 0.20 -0.0
256,562 + Pf6N2E2_205 0.31 +0.7
256,562 + Pf6N2E2_205 0.31 -0.2
256,563 - Pf6N2E2_205 0.32 +1.1
256,563 - Pf6N2E2_205 0.32 +0.6
256,563 - Pf6N2E2_205 0.32 +0.0
256,659 + Pf6N2E2_205 0.44 +1.2
256,661 + Pf6N2E2_205 0.45 +0.4
256,661 + Pf6N2E2_205 0.45 +0.9
256,882 + Pf6N2E2_205 0.74 +0.7
256,883 - Pf6N2E2_205 0.74 -0.9
256,892 + Pf6N2E2_205 0.76 +1.8
256,956 - Pf6N2E2_205 0.84 -0.1
257,148 - +1.5
257,305 + Pf6N2E2_206 0.19 +3.0
257,305 + Pf6N2E2_206 0.19 +0.9
257,306 - Pf6N2E2_206 0.20 -1.7
257,306 - Pf6N2E2_206 0.20 -0.4
257,306 - Pf6N2E2_206 0.20 +0.1
257,387 - Pf6N2E2_206 0.27 -0.6
257,389 + Pf6N2E2_206 0.28 -1.1
257,390 - Pf6N2E2_206 0.28 -0.4
257,395 + Pf6N2E2_206 0.28 -0.4
257,395 + Pf6N2E2_206 0.28 +0.4
257,395 + Pf6N2E2_206 0.28 -0.5
257,396 - Pf6N2E2_206 0.28 +0.5
257,459 + Pf6N2E2_206 0.35 +0.5
257,459 + Pf6N2E2_206 0.35 +0.3
257,761 + Pf6N2E2_206 0.64 -0.9
257,761 + Pf6N2E2_206 0.64 +0.1
257,850 - Pf6N2E2_206 0.73 -0.0
258,004 + Pf6N2E2_206 0.88 -2.1
258,004 + Pf6N2E2_206 0.88 -0.5
258,004 + Pf6N2E2_206 0.88 -0.1
258,004 + Pf6N2E2_206 0.88 +0.0
258,004 + Pf6N2E2_206 0.88 -0.9
258,004 + Pf6N2E2_206 0.88 +0.1
258,005 - Pf6N2E2_206 0.88 -0.4
258,005 - Pf6N2E2_206 0.88 -0.1
258,005 - Pf6N2E2_206 0.88 +0.1
258,005 - Pf6N2E2_206 0.88 +0.5
258,005 - Pf6N2E2_206 0.88 -1.4
258,028 - +1.0
258,048 + -0.4
258,048 + -0.1
258,049 - +0.5
258,050 + +1.7
258,051 - -1.8
258,051 - -1.5
258,051 - -0.0
258,199 + +0.2
258,199 + -1.2
258,199 + -0.2
258,199 + +0.5
258,199 + +0.1
258,200 - +0.9
258,200 - +0.1
258,383 - Pf6N2E2_207 0.10 -0.4
258,383 - Pf6N2E2_207 0.10 +0.5
258,463 + Pf6N2E2_207 0.14 -1.2
258,464 - Pf6N2E2_207 0.14 -0.1
258,577 + Pf6N2E2_207 0.18 +1.0
258,578 - Pf6N2E2_207 0.18 +0.5
258,730 + Pf6N2E2_207 0.25 +0.8
258,861 + Pf6N2E2_207 0.30 -1.7
258,862 - Pf6N2E2_207 0.30 +0.7
258,862 - Pf6N2E2_207 0.30 +0.4
258,862 - Pf6N2E2_207 0.30 +0.6
258,862 - Pf6N2E2_207 0.30 -0.4
258,862 - Pf6N2E2_207 0.30 -1.7
258,865 + Pf6N2E2_207 0.30 -1.9
258,865 + Pf6N2E2_207 0.30 +2.3
258,865 + Pf6N2E2_207 0.30 -1.9
258,865 + Pf6N2E2_207 0.30 -0.1
258,865 + Pf6N2E2_207 0.30 +1.2
258,866 - Pf6N2E2_207 0.30 -1.5
258,916 + Pf6N2E2_207 0.33 -1.6
258,919 + Pf6N2E2_207 0.33 -1.1
258,920 - Pf6N2E2_207 0.33 +0.6
258,920 - Pf6N2E2_207 0.33 -1.3
259,060 + Pf6N2E2_207 0.39 +0.8
259,060 + Pf6N2E2_207 0.39 -1.3
259,061 - Pf6N2E2_207 0.39 -0.9

Or see this region's nucleotide sequence