Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03395 and AO353_03400 are separated by 117 nucleotides AO353_03400 and AO353_03405 are separated by 130 nucleotides
AO353_03395: AO353_03395 - sugar ABC transporter substrate-binding protein, at 722,648 to 723,955
_03395
AO353_03400: AO353_03400 - D-mannose isomerase (EC 5.3.1.7) <small>(from data)</small>, at 724,073 to 725,332
_03400
AO353_03405: AO353_03405 - histidine kinase, at 725,463 to 726,926
_03405
Position (kb) 724
725
726 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 723.075 kb on + strand, within AO353_03395 at 723.076 kb on - strand, within AO353_03395 at 723.076 kb on - strand, within AO353_03395 at 723.076 kb on - strand, within AO353_03395 at 723.213 kb on + strand, within AO353_03395 at 723.213 kb on + strand, within AO353_03395 at 723.213 kb on + strand, within AO353_03395 at 723.304 kb on - strand, within AO353_03395 at 723.423 kb on + strand, within AO353_03395 at 723.423 kb on + strand, within AO353_03395 at 723.423 kb on + strand, within AO353_03395 at 723.423 kb on + strand, within AO353_03395 at 723.423 kb on + strand, within AO353_03395 at 723.424 kb on - strand, within AO353_03395 at 723.424 kb on - strand, within AO353_03395 at 723.424 kb on - strand, within AO353_03395 at 723.424 kb on - strand, within AO353_03395 at 723.424 kb on - strand, within AO353_03395 at 723.424 kb on - strand, within AO353_03395 at 723.531 kb on + strand, within AO353_03395 at 723.531 kb on + strand, within AO353_03395 at 723.531 kb on + strand, within AO353_03395 at 723.531 kb on + strand, within AO353_03395 at 723.531 kb on + strand, within AO353_03395 at 723.532 kb on - strand, within AO353_03395 at 723.532 kb on - strand, within AO353_03395 at 723.532 kb on - strand, within AO353_03395 at 723.532 kb on - strand, within AO353_03395 at 723.532 kb on - strand, within AO353_03395 at 723.532 kb on - strand, within AO353_03395 at 723.543 kb on + strand, within AO353_03395 at 723.544 kb on - strand, within AO353_03395 at 723.716 kb on + strand, within AO353_03395 at 723.716 kb on + strand, within AO353_03395 at 723.717 kb on - strand, within AO353_03395 at 723.717 kb on - strand, within AO353_03395 at 723.717 kb on - strand, within AO353_03395 at 723.957 kb on + strand at 723.957 kb on + strand at 723.957 kb on + strand at 723.957 kb on + strand at 723.957 kb on + strand at 723.958 kb on - strand at 723.958 kb on - strand at 723.958 kb on - strand at 723.958 kb on - strand at 723.958 kb on - strand at 723.958 kb on - strand at 723.963 kb on + strand at 723.963 kb on + strand at 723.963 kb on + strand at 723.963 kb on + strand at 723.964 kb on - strand at 723.964 kb on - strand at 723.978 kb on + strand at 723.978 kb on + strand at 723.978 kb on + strand at 723.978 kb on + strand at 723.979 kb on - strand at 723.979 kb on - strand at 723.979 kb on - strand at 723.979 kb on - strand at 723.979 kb on - strand at 723.979 kb on - strand at 723.979 kb on - strand at 724.017 kb on - strand at 724.025 kb on + strand at 724.025 kb on + strand at 724.025 kb on + strand at 724.025 kb on + strand at 724.026 kb on - strand at 724.026 kb on - strand at 724.026 kb on - strand at 724.074 kb on + strand at 724.074 kb on + strand at 724.075 kb on - strand at 724.075 kb on - strand at 724.075 kb on - strand at 724.075 kb on - strand at 724.075 kb on - strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.082 kb on + strand at 724.082 kb on + strand at 724.083 kb on - strand at 724.083 kb on - strand at 724.302 kb on + strand, within AO353_03400 at 724.303 kb on - strand, within AO353_03400 at 724.413 kb on + strand, within AO353_03400 at 724.413 kb on + strand, within AO353_03400 at 724.413 kb on + strand, within AO353_03400 at 724.413 kb on + strand, within AO353_03400 at 724.413 kb on + strand, within AO353_03400 at 724.414 kb on - strand, within AO353_03400 at 724.414 kb on - strand, within AO353_03400 at 724.414 kb on - strand, within AO353_03400 at 724.414 kb on - strand, within AO353_03400 at 724.414 kb on - strand, within AO353_03400 at 724.414 kb on - strand, within AO353_03400 at 724.414 kb on - strand, within AO353_03400 at 724.587 kb on + strand, within AO353_03400 at 724.587 kb on + strand, within AO353_03400 at 724.588 kb on - strand, within AO353_03400 at 724.588 kb on - strand, within AO353_03400 at 724.623 kb on + strand, within AO353_03400 at 724.624 kb on - strand, within AO353_03400 at 724.837 kb on + strand, within AO353_03400 at 724.838 kb on - strand, within AO353_03400 at 724.980 kb on + strand, within AO353_03400 at 724.980 kb on + strand, within AO353_03400 at 724.981 kb on - strand, within AO353_03400 at 724.981 kb on - strand, within AO353_03400 at 725.352 kb on + strand at 725.352 kb on + strand at 725.353 kb on - strand at 725.369 kb on + strand at 725.370 kb on - strand at 725.411 kb on + strand at 725.411 kb on + strand at 725.412 kb on - strand at 725.412 kb on - strand at 725.412 kb on - strand at 725.476 kb on - strand at 725.541 kb on - strand at 725.675 kb on + strand, within AO353_03405 at 725.675 kb on + strand, within AO353_03405 at 725.722 kb on + strand, within AO353_03405 at 725.842 kb on + strand, within AO353_03405 at 725.842 kb on + strand, within AO353_03405 at 725.843 kb on - strand, within AO353_03405 at 725.865 kb on + strand, within AO353_03405 at 725.865 kb on + strand, within AO353_03405 at 725.866 kb on - strand, within AO353_03405 at 726.113 kb on + strand, within AO353_03405 at 726.114 kb on - strand, within AO353_03405 at 726.251 kb on + strand, within AO353_03405 at 726.329 kb on + strand, within AO353_03405 at 726.329 kb on + strand, within AO353_03405 at 726.329 kb on + strand, within AO353_03405 at 726.329 kb on + strand, within AO353_03405 at 726.329 kb on + strand, within AO353_03405 at 726.331 kb on + strand, within AO353_03405 at 726.332 kb on - strand, within AO353_03405
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 723,075 + AO353_03395 0.33 -1.9 723,076 - AO353_03395 0.33 -3.1 723,076 - AO353_03395 0.33 -1.8 723,076 - AO353_03395 0.33 -0.4 723,213 + AO353_03395 0.43 -0.3 723,213 + AO353_03395 0.43 -2.4 723,213 + AO353_03395 0.43 -3.2 723,304 - AO353_03395 0.50 -2.9 723,423 + AO353_03395 0.59 -1.8 723,423 + AO353_03395 0.59 -1.0 723,423 + AO353_03395 0.59 -1.8 723,423 + AO353_03395 0.59 -0.8 723,423 + AO353_03395 0.59 -2.5 723,424 - AO353_03395 0.59 -2.1 723,424 - AO353_03395 0.59 -3.6 723,424 - AO353_03395 0.59 -1.6 723,424 - AO353_03395 0.59 -0.7 723,424 - AO353_03395 0.59 -1.7 723,424 - AO353_03395 0.59 -3.0 723,531 + AO353_03395 0.68 -1.5 723,531 + AO353_03395 0.68 -1.0 723,531 + AO353_03395 0.68 -1.0 723,531 + AO353_03395 0.68 -2.8 723,531 + AO353_03395 0.68 -1.0 723,532 - AO353_03395 0.68 +0.4 723,532 - AO353_03395 0.68 -3.5 723,532 - AO353_03395 0.68 -2.7 723,532 - AO353_03395 0.68 -1.9 723,532 - AO353_03395 0.68 -1.9 723,532 - AO353_03395 0.68 -1.3 723,543 + AO353_03395 0.68 -1.4 723,544 - AO353_03395 0.69 -2.3 723,716 + AO353_03395 0.82 -1.4 723,716 + AO353_03395 0.82 -2.0 723,717 - AO353_03395 0.82 -2.4 723,717 - AO353_03395 0.82 -0.4 723,717 - AO353_03395 0.82 -2.3 723,957 + -1.8 723,957 + -1.8 723,957 + -0.5 723,957 + -2.9 723,957 + -1.7 723,958 - -1.1 723,958 - -0.2 723,958 - -2.4 723,958 - -2.3 723,958 - -2.4 723,958 - -2.5 723,963 + -1.8 723,963 + -2.7 723,963 + -2.3 723,963 + -0.8 723,964 - -0.6 723,964 - -1.0 723,978 + -1.1 723,978 + -2.4 723,978 + -1.2 723,978 + -1.0 723,979 - -0.0 723,979 - -0.2 723,979 - +0.1 723,979 - +0.4 723,979 - -0.3 723,979 - +0.4 723,979 - -0.4 724,017 - +0.3 724,025 + -2.0 724,025 + -1.3 724,025 + -3.0 724,025 + -1.3 724,026 - -0.2 724,026 - +0.3 724,026 - +0.6 724,074 + -1.8 724,074 + -0.2 724,075 - +0.8 724,075 - -1.3 724,075 - +0.1 724,075 - -1.7 724,075 - -1.2 724,078 + -0.2 724,078 + +0.0 724,078 + +0.1 724,078 + -0.9 724,078 + -0.2 724,078 + -0.7 724,078 + +1.6 724,078 + +0.2 724,078 + +1.0 724,078 + -0.4 724,078 + -0.3 724,078 + +0.9 724,078 + -1.5 724,078 + -1.4 724,078 + -0.3 724,078 + -0.0 724,078 + -0.3 724,078 + +1.3 724,078 + -1.3 724,078 + -1.1 724,078 + -0.4 724,078 + +0.3 724,078 + +0.1 724,078 + -0.5 724,078 + +0.2 724,078 + -0.1 724,078 + +1.0 724,078 + -1.3 724,078 + +0.1 724,078 + -1.0 724,078 + -1.1 724,079 - +1.8 724,079 - +0.4 724,079 - +1.2 724,079 - -0.8 724,079 - -0.1 724,079 - +0.3 724,079 - +0.1 724,079 - +1.7 724,079 - -0.4 724,079 - +0.5 724,079 - -0.4 724,079 - +0.5 724,079 - -1.0 724,079 - -1.3 724,079 - +1.0 724,079 - -1.0 724,079 - +0.1 724,079 - +0.2 724,079 - +1.2 724,079 - +0.4 724,079 - -0.7 724,079 - +1.1 724,079 - +0.5 724,079 - -0.3 724,082 + -0.2 724,082 + -2.1 724,083 - +0.6 724,083 - +0.9 724,302 + AO353_03400 0.18 -2.3 724,303 - AO353_03400 0.18 -2.7 724,413 + AO353_03400 0.27 -2.2 724,413 + AO353_03400 0.27 -2.6 724,413 + AO353_03400 0.27 -2.2 724,413 + AO353_03400 0.27 -4.0 724,413 + AO353_03400 0.27 -4.3 724,414 - AO353_03400 0.27 -1.9 724,414 - AO353_03400 0.27 -2.5 724,414 - AO353_03400 0.27 -2.6 724,414 - AO353_03400 0.27 -1.9 724,414 - AO353_03400 0.27 -1.3 724,414 - AO353_03400 0.27 -2.3 724,414 - AO353_03400 0.27 -3.8 724,587 + AO353_03400 0.41 -2.6 724,587 + AO353_03400 0.41 -3.4 724,588 - AO353_03400 0.41 -3.2 724,588 - AO353_03400 0.41 -0.3 724,623 + AO353_03400 0.44 -1.7 724,624 - AO353_03400 0.44 -3.4 724,837 + AO353_03400 0.61 -2.5 724,838 - AO353_03400 0.61 -0.8 724,980 + AO353_03400 0.72 -2.5 724,980 + AO353_03400 0.72 -3.6 724,981 - AO353_03400 0.72 -3.1 724,981 - AO353_03400 0.72 -2.3 725,352 + -2.0 725,352 + -3.3 725,353 - +1.0 725,369 + -0.5 725,370 - -1.6 725,411 + +0.2 725,411 + -2.5 725,412 - -4.2 725,412 - -0.8 725,412 - -1.2 725,476 - -0.3 725,541 - +0.4 725,675 + AO353_03405 0.14 -0.0 725,675 + AO353_03405 0.14 +1.0 725,722 + AO353_03405 0.18 +0.1 725,842 + AO353_03405 0.26 -1.1 725,842 + AO353_03405 0.26 -2.8 725,843 - AO353_03405 0.26 -1.9 725,865 + AO353_03405 0.27 -0.3 725,865 + AO353_03405 0.27 -1.0 725,866 - AO353_03405 0.28 -1.0 726,113 + AO353_03405 0.44 +0.6 726,114 - AO353_03405 0.44 +1.2 726,251 + AO353_03405 0.54 +1.6 726,329 + AO353_03405 0.59 -0.7 726,329 + AO353_03405 0.59 +1.0 726,329 + AO353_03405 0.59 +0.6 726,329 + AO353_03405 0.59 -0.3 726,329 + AO353_03405 0.59 +1.0 726,331 + AO353_03405 0.59 -1.2 726,332 - AO353_03405 0.59 +0.0
Or see this region's nucleotide sequence