Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03200 and MMP_RS03205 are separated by 136 nucleotides MMP_RS03205 and MMP_RS03210 are separated by 147 nucleotides
MMP_RS03200: MMP_RS03200 - methanogenesis marker 15 protein, at 603,102 to 604,337
_RS03200
MMP_RS03205: MMP_RS03205 - peptidyl-tRNA hydrolase Pth2, at 604,474 to 604,824
_RS03205
MMP_RS03210: MMP_RS03210 - tRNA guanosine(15) transglycosylase TgtA, at 604,972 to 606,921
_RS03210
Position (kb) 604
605 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 603.854 kb on - strand at 604.216 kb on - strand at 604.242 kb on + strand at 604.429 kb on - strand at 604.430 kb on + strand at 604.434 kb on - strand at 604.475 kb on - strand at 604.481 kb on + strand at 604.486 kb on - strand at 604.545 kb on - strand, within MMP_RS03205 at 604.699 kb on + strand, within MMP_RS03205 at 604.821 kb on + strand at 604.876 kb on + strand at 604.879 kb on + strand at 604.880 kb on - strand at 604.881 kb on + strand at 604.881 kb on + strand at 604.885 kb on + strand at 604.885 kb on + strand at 604.885 kb on + strand at 604.885 kb on + strand at 604.916 kb on - strand at 604.961 kb on + strand at 604.961 kb on + strand at 605.147 kb on - strand at 605.270 kb on - strand, within MMP_RS03210 at 605.270 kb on - strand, within MMP_RS03210 at 605.271 kb on + strand, within MMP_RS03210 at 605.457 kb on - strand, within MMP_RS03210 at 605.467 kb on + strand, within MMP_RS03210 at 605.483 kb on + strand, within MMP_RS03210 at 605.555 kb on - strand, within MMP_RS03210 at 605.555 kb on - strand, within MMP_RS03210 at 605.601 kb on - strand, within MMP_RS03210 at 605.749 kb on - strand, within MMP_RS03210 at 605.822 kb on - strand, within MMP_RS03210 at 605.823 kb on + strand, within MMP_RS03210 at 605.823 kb on + strand, within MMP_RS03210 at 605.823 kb on + strand, within MMP_RS03210
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 603,854 - -4.5 604,216 - -1.2 604,242 + -2.9 604,429 - -0.5 604,430 + -0.7 604,434 - -0.4 604,475 - -0.5 604,481 + -0.3 604,486 - -0.5 604,545 - MMP_RS03205 0.20 +0.4 604,699 + MMP_RS03205 0.64 -0.8 604,821 + -0.9 604,876 + -0.1 604,879 + -0.6 604,880 - +0.1 604,881 + -0.2 604,881 + -0.1 604,885 + -0.2 604,885 + +0.0 604,885 + -0.3 604,885 + +0.1 604,916 - -0.5 604,961 + +0.2 604,961 + -0.5 605,147 - +0.8 605,270 - MMP_RS03210 0.15 -0.9 605,270 - MMP_RS03210 0.15 -0.4 605,271 + MMP_RS03210 0.15 -0.0 605,457 - MMP_RS03210 0.25 -0.0 605,467 + MMP_RS03210 0.25 +0.5 605,483 + MMP_RS03210 0.26 +0.3 605,555 - MMP_RS03210 0.30 -0.4 605,555 - MMP_RS03210 0.30 +0.5 605,601 - MMP_RS03210 0.32 -0.2 605,749 - MMP_RS03210 0.40 +0.0 605,822 - MMP_RS03210 0.44 -2.4 605,823 + MMP_RS03210 0.44 -0.0 605,823 + MMP_RS03210 0.44 -0.3 605,823 + MMP_RS03210 0.44 -0.1
Or see this region's nucleotide sequence