Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3337 and Dsui_3338 overlap by 4 nucleotides Dsui_3338 and Dsui_3339 are separated by 147 nucleotides Dsui_3339 and Dsui_3340 are separated by 26 nucleotides Dsui_3340 and Dsui_3341 are separated by 28 nucleotides
Dsui_3337: Dsui_3337 - hypothetical protein, at 3,577,909 to 3,578,505
_3337
Dsui_3338: Dsui_3338 - Zn-finger containing NTP pyrophosphohydrolase, at 3,578,502 to 3,578,954
_3338
Dsui_3339: Dsui_3339 - branched-chain amino acid aminotransferase, group I, at 3,579,102 to 3,580,022
_3339
Dsui_3340: Dsui_3340 - hypothetical protein, at 3,580,049 to 3,580,237
_3340
Dsui_3341: Dsui_3341 - lipopolysaccharide heptosyltransferase II, at 3,580,266 to 3,581,273
_3341
Position (kb)
3579
3580
3581 Strain fitness (log2 ratio)
-2
-1
0
1 at 3578.128 kb on + strand, within Dsui_3337 at 3578.144 kb on - strand, within Dsui_3337 at 3578.144 kb on - strand, within Dsui_3337 at 3578.210 kb on - strand, within Dsui_3337 at 3578.220 kb on - strand, within Dsui_3337 at 3578.310 kb on - strand, within Dsui_3337 at 3578.404 kb on + strand, within Dsui_3337 at 3578.404 kb on + strand, within Dsui_3337 at 3578.412 kb on - strand, within Dsui_3337 at 3578.412 kb on - strand, within Dsui_3337 at 3578.530 kb on - strand at 3578.531 kb on - strand at 3578.531 kb on - strand at 3578.563 kb on - strand, within Dsui_3338 at 3578.612 kb on + strand, within Dsui_3338 at 3578.652 kb on - strand, within Dsui_3338 at 3578.753 kb on + strand, within Dsui_3338 at 3578.787 kb on - strand, within Dsui_3338 at 3578.803 kb on - strand, within Dsui_3338 at 3578.805 kb on + strand at 3578.813 kb on - strand, within Dsui_3338 at 3578.818 kb on - strand, within Dsui_3338 at 3578.837 kb on - strand, within Dsui_3338 at 3579.004 kb on - strand at 3579.108 kb on + strand at 3579.165 kb on + strand at 3579.202 kb on - strand, within Dsui_3339 at 3579.277 kb on - strand, within Dsui_3339 at 3579.356 kb on - strand, within Dsui_3339 at 3579.357 kb on + strand, within Dsui_3339 at 3579.484 kb on - strand, within Dsui_3339 at 3579.582 kb on - strand, within Dsui_3339 at 3579.722 kb on + strand, within Dsui_3339 at 3579.730 kb on - strand at 3579.733 kb on - strand, within Dsui_3339 at 3579.738 kb on - strand, within Dsui_3339 at 3579.738 kb on - strand, within Dsui_3339 at 3579.738 kb on - strand, within Dsui_3339 at 3579.756 kb on + strand, within Dsui_3339 at 3580.014 kb on - strand at 3580.115 kb on - strand, within Dsui_3340 at 3580.231 kb on + strand at 3580.234 kb on - strand at 3580.234 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 3,578,128 + Dsui_3337 0.37 +0.6 3,578,144 - Dsui_3337 0.39 -0.5 3,578,144 - Dsui_3337 0.39 -0.3 3,578,210 - Dsui_3337 0.50 -0.0 3,578,220 - Dsui_3337 0.52 +0.1 3,578,310 - Dsui_3337 0.67 -0.3 3,578,404 + Dsui_3337 0.83 -0.4 3,578,404 + Dsui_3337 0.83 +0.6 3,578,412 - Dsui_3337 0.84 -0.7 3,578,412 - Dsui_3337 0.84 +0.0 3,578,530 - -0.1 3,578,531 - +0.0 3,578,531 - -0.5 3,578,563 - Dsui_3338 0.13 +0.2 3,578,612 + Dsui_3338 0.24 -0.4 3,578,652 - Dsui_3338 0.33 -0.2 3,578,753 + Dsui_3338 0.55 -0.4 3,578,787 - Dsui_3338 0.63 -0.0 3,578,803 - Dsui_3338 0.66 -0.1 3,578,805 + +0.6 3,578,813 - Dsui_3338 0.69 -0.2 3,578,818 - Dsui_3338 0.70 -0.4 3,578,837 - Dsui_3338 0.74 -0.4 3,579,004 - +0.6 3,579,108 + +0.4 3,579,165 + +0.3 3,579,202 - Dsui_3339 0.11 +0.6 3,579,277 - Dsui_3339 0.19 +0.6 3,579,356 - Dsui_3339 0.28 +0.6 3,579,357 + Dsui_3339 0.28 +0.6 3,579,484 - Dsui_3339 0.41 +0.6 3,579,582 - Dsui_3339 0.52 -0.4 3,579,722 + Dsui_3339 0.67 -0.2 3,579,730 - +0.6 3,579,733 - Dsui_3339 0.69 +0.6 3,579,738 - Dsui_3339 0.69 -2.6 3,579,738 - Dsui_3339 0.69 -1.0 3,579,738 - Dsui_3339 0.69 +0.6 3,579,756 + Dsui_3339 0.71 +0.2 3,580,014 - -2.0 3,580,115 - Dsui_3340 0.35 -1.4 3,580,231 + +0.1 3,580,234 - -1.8 3,580,234 - +0.6
Or see this region's nucleotide sequence