Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2956 and Dsui_2957 overlap by 7 nucleotides Dsui_2957 and Dsui_2958 overlap by 4 nucleotides Dsui_2958 and Dsui_2959 are separated by 13 nucleotides Dsui_2959 and Dsui_2960 are separated by 9 nucleotides
Dsui_2956: Dsui_2956 - ABC-type cobalt transport system, periplasmic component, at 3,165,308 to 3,165,679
_2956
Dsui_2957: Dsui_2957 - cobalt ABC transporter, permease protein CbiQ, at 3,165,673 to 3,166,404
_2957
Dsui_2958: Dsui_2958 - cobalt transport protein ATP-binding subunit, at 3,166,401 to 3,167,240
_2958
Dsui_2959: Dsui_2959 - precorrin-4 C11-methyltransferase, at 3,167,254 to 3,168,057
_2959
Dsui_2960: Dsui_2960 - hypothetical protein, at 3,168,067 to 3,169,053
_2960
Position (kb)
3166
3167
3168 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3165.575 kb on + strand, within Dsui_2956 at 3165.650 kb on + strand at 3166.105 kb on - strand, within Dsui_2957 at 3166.105 kb on - strand at 3166.154 kb on - strand at 3166.479 kb on - strand at 3166.534 kb on + strand, within Dsui_2958 at 3166.563 kb on - strand at 3166.916 kb on + strand, within Dsui_2958 at 3166.947 kb on + strand, within Dsui_2958 at 3166.947 kb on + strand, within Dsui_2958 at 3166.982 kb on + strand, within Dsui_2958 at 3166.990 kb on - strand at 3167.074 kb on + strand, within Dsui_2958 at 3167.197 kb on + strand at 3167.385 kb on - strand, within Dsui_2959 at 3167.503 kb on + strand, within Dsui_2959 at 3167.580 kb on - strand at 3167.726 kb on + strand, within Dsui_2959 at 3167.741 kb on + strand, within Dsui_2959 at 3167.749 kb on - strand at 3167.841 kb on + strand, within Dsui_2959 at 3167.934 kb on + strand, within Dsui_2959 at 3167.942 kb on - strand, within Dsui_2959 at 3168.011 kb on + strand at 3168.051 kb on - strand at 3168.100 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 3,165,575 + Dsui_2956 0.72 -0.3 3,165,650 + -0.0 3,166,105 - Dsui_2957 0.59 +0.5 3,166,105 - +0.5 3,166,154 - -1.1 3,166,479 - -1.5 3,166,534 + Dsui_2958 0.16 -0.5 3,166,563 - -0.5 3,166,916 + Dsui_2958 0.61 +0.5 3,166,947 + Dsui_2958 0.65 -0.7 3,166,947 + Dsui_2958 0.65 +0.1 3,166,982 + Dsui_2958 0.69 +0.6 3,166,990 - +0.5 3,167,074 + Dsui_2958 0.80 +0.5 3,167,197 + +2.0 3,167,385 - Dsui_2959 0.16 -1.8 3,167,503 + Dsui_2959 0.31 -2.3 3,167,580 - +0.5 3,167,726 + Dsui_2959 0.59 -0.1 3,167,741 + Dsui_2959 0.61 -0.2 3,167,749 - +0.5 3,167,841 + Dsui_2959 0.73 +0.3 3,167,934 + Dsui_2959 0.85 -2.0 3,167,942 - Dsui_2959 0.86 -1.5 3,168,011 + +0.4 3,168,051 - -1.5 3,168,100 - -0.5
Or see this region's nucleotide sequence