Strain Fitness in Dechlorosoma suillum PS around Dsui_2942

Experiment: ALP with Zinc 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2940 and Dsui_2941 are separated by 201 nucleotidesDsui_2941 and Dsui_2942 are separated by 81 nucleotidesDsui_2942 and Dsui_2943 are separated by 88 nucleotides Dsui_2940: Dsui_2940 - hypothetical protein, at 3,145,796 to 3,146,251 _2940 Dsui_2941: Dsui_2941 - hypothetical protein, at 3,146,453 to 3,146,929 _2941 Dsui_2942: Dsui_2942 - ABC-type Fe3+ transport system, permease component, at 3,147,011 to 3,148,663 _2942 Dsui_2943: Dsui_2943 - ABC-type spermidine/putrescine transport system, ATPase component, at 3,148,752 to 3,149,822 _2943 Position (kb) 3147 3148 3149Strain fitness (log2 ratio) -2 -1 0 1at 3146.019 kb on - strand, within Dsui_2940at 3146.050 kb on - strand, within Dsui_2940at 3146.050 kb on - strand, within Dsui_2940at 3146.058 kb on - strand, within Dsui_2940at 3146.058 kb on - strand, within Dsui_2940at 3146.070 kb on - strand, within Dsui_2940at 3146.080 kb on - strand, within Dsui_2940at 3146.107 kb on - strand, within Dsui_2940at 3146.110 kb on - strand, within Dsui_2940at 3146.126 kb on - strand, within Dsui_2940at 3146.161 kb on - strand, within Dsui_2940at 3146.205 kb on - strand, within Dsui_2940at 3146.278 kb on - strandat 3146.278 kb on - strandat 3146.313 kb on - strandat 3146.313 kb on - strandat 3146.379 kb on - strandat 3146.379 kb on - strandat 3146.419 kb on - strandat 3146.453 kb on - strandat 3146.486 kb on - strandat 3146.490 kb on + strandat 3146.492 kb on - strandat 3146.509 kb on - strand, within Dsui_2941at 3146.509 kb on - strand, within Dsui_2941at 3146.553 kb on - strand, within Dsui_2941at 3146.635 kb on - strand, within Dsui_2941at 3146.691 kb on - strand, within Dsui_2941at 3146.707 kb on - strand, within Dsui_2941at 3146.858 kb on - strand, within Dsui_2941at 3146.914 kb on - strandat 3147.132 kb on - strandat 3147.177 kb on - strand, within Dsui_2942at 3147.225 kb on - strand, within Dsui_2942at 3147.225 kb on - strand, within Dsui_2942at 3147.237 kb on + strandat 3147.245 kb on - strand, within Dsui_2942at 3147.286 kb on + strandat 3147.371 kb on - strand, within Dsui_2942at 3147.379 kb on + strandat 3147.392 kb on - strand, within Dsui_2942at 3147.392 kb on - strand, within Dsui_2942at 3147.392 kb on - strand, within Dsui_2942at 3147.496 kb on + strand, within Dsui_2942at 3147.521 kb on - strand, within Dsui_2942at 3147.533 kb on - strand, within Dsui_2942at 3147.556 kb on - strand, within Dsui_2942at 3147.609 kb on - strand, within Dsui_2942at 3147.664 kb on + strandat 3147.685 kb on + strandat 3147.690 kb on + strand, within Dsui_2942at 3147.742 kb on + strandat 3147.827 kb on - strand, within Dsui_2942at 3148.009 kb on - strand, within Dsui_2942at 3148.052 kb on - strand, within Dsui_2942at 3148.096 kb on - strand, within Dsui_2942at 3148.134 kb on - strand, within Dsui_2942at 3148.134 kb on - strand, within Dsui_2942at 3148.169 kb on - strand, within Dsui_2942at 3148.169 kb on - strand, within Dsui_2942at 3148.208 kb on + strandat 3148.218 kb on - strand, within Dsui_2942at 3148.286 kb on - strand, within Dsui_2942at 3148.318 kb on - strand, within Dsui_2942at 3148.318 kb on - strand, within Dsui_2942at 3148.318 kb on - strand, within Dsui_2942at 3148.318 kb on - strand, within Dsui_2942at 3148.363 kb on - strand, within Dsui_2942at 3148.367 kb on + strandat 3148.454 kb on - strand, within Dsui_2942at 3148.465 kb on + strandat 3148.468 kb on - strand, within Dsui_2942at 3148.495 kb on + strand, within Dsui_2942at 3148.587 kb on + strandat 3148.732 kb on + strandat 3148.732 kb on + strandat 3148.744 kb on + strandat 3148.744 kb on + strandat 3148.752 kb on - strandat 3148.752 kb on - strandat 3148.784 kb on + strandat 3148.784 kb on + strandat 3148.792 kb on - strandat 3148.803 kb on + strandat 3149.019 kb on - strand, within Dsui_2943at 3149.060 kb on - strandat 3149.247 kb on + strand, within Dsui_2943at 3149.326 kb on + strand, within Dsui_2943at 3149.336 kb on + strand, within Dsui_2943at 3149.406 kb on + strand, within Dsui_2943at 3149.462 kb on + strand, within Dsui_2943at 3149.479 kb on + strand, within Dsui_2943at 3149.597 kb on + strand, within Dsui_2943at 3149.635 kb on - strand, within Dsui_2943at 3149.654 kb on + strand, within Dsui_2943

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM
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3,146,019 - Dsui_2940 0.49 -1.1
3,146,050 - Dsui_2940 0.56 -2.3
3,146,050 - Dsui_2940 0.56 -1.5
3,146,058 - Dsui_2940 0.57 +0.5
3,146,058 - Dsui_2940 0.57 +0.5
3,146,070 - Dsui_2940 0.60 +0.5
3,146,080 - Dsui_2940 0.62 -1.1
3,146,107 - Dsui_2940 0.68 -1.5
3,146,110 - Dsui_2940 0.69 -1.8
3,146,126 - Dsui_2940 0.72 -1.8
3,146,161 - Dsui_2940 0.80 +0.5
3,146,205 - Dsui_2940 0.90 -2.1
3,146,278 - -1.8
3,146,278 - -0.5
3,146,313 - +0.5
3,146,313 - -0.5
3,146,379 - -0.5
3,146,379 - -2.5
3,146,419 - -0.5
3,146,453 - +0.5
3,146,486 - -1.5
3,146,490 + -0.5
3,146,492 - +0.5
3,146,509 - Dsui_2941 0.12 -1.5
3,146,509 - Dsui_2941 0.12 -1.5
3,146,553 - Dsui_2941 0.21 +0.5
3,146,635 - Dsui_2941 0.38 -1.1
3,146,691 - Dsui_2941 0.50 +0.5
3,146,707 - Dsui_2941 0.53 -2.3
3,146,858 - Dsui_2941 0.85 +1.5
3,146,914 - -1.1
3,147,132 - -0.7
3,147,177 - Dsui_2942 0.10 -0.7
3,147,225 - Dsui_2942 0.13 -0.3
3,147,225 - Dsui_2942 0.13 -0.5
3,147,237 + -1.1
3,147,245 - Dsui_2942 0.14 -0.5
3,147,286 + +0.5
3,147,371 - Dsui_2942 0.22 +0.1
3,147,379 + +0.5
3,147,392 - Dsui_2942 0.23 -0.4
3,147,392 - Dsui_2942 0.23 -0.4
3,147,392 - Dsui_2942 0.23 -0.4
3,147,496 + Dsui_2942 0.29 -2.3
3,147,521 - Dsui_2942 0.31 -0.5
3,147,533 - Dsui_2942 0.32 -0.5
3,147,556 - Dsui_2942 0.33 -0.5
3,147,609 - Dsui_2942 0.36 -0.4
3,147,664 + -1.5
3,147,685 + +0.5
3,147,690 + Dsui_2942 0.41 -0.5
3,147,742 + -0.5
3,147,827 - Dsui_2942 0.49 -0.5
3,148,009 - Dsui_2942 0.60 -0.3
3,148,052 - Dsui_2942 0.63 -0.0
3,148,096 - Dsui_2942 0.66 -0.2
3,148,134 - Dsui_2942 0.68 -0.4
3,148,134 - Dsui_2942 0.68 -0.0
3,148,169 - Dsui_2942 0.70 -0.5
3,148,169 - Dsui_2942 0.70 -0.6
3,148,208 + -0.5
3,148,218 - Dsui_2942 0.73 -1.0
3,148,286 - Dsui_2942 0.77 -0.6
3,148,318 - Dsui_2942 0.79 -0.2
3,148,318 - Dsui_2942 0.79 +0.2
3,148,318 - Dsui_2942 0.79 -0.3
3,148,318 - Dsui_2942 0.79 -0.4
3,148,363 - Dsui_2942 0.82 -0.4
3,148,367 + -0.5
3,148,454 - Dsui_2942 0.87 -0.4
3,148,465 + +0.5
3,148,468 - Dsui_2942 0.88 -0.1
3,148,495 + Dsui_2942 0.90 -1.5
3,148,587 + +0.5
3,148,732 + +0.3
3,148,732 + -1.0
3,148,744 + +0.4
3,148,744 + +0.1
3,148,752 - -1.1
3,148,752 - +0.5
3,148,784 + -0.5
3,148,784 + -0.2
3,148,792 - -0.5
3,148,803 + -0.5
3,149,019 - Dsui_2943 0.25 -2.1
3,149,060 - +0.5
3,149,247 + Dsui_2943 0.46 -0.4
3,149,326 + Dsui_2943 0.54 +0.2
3,149,336 + Dsui_2943 0.55 -0.4
3,149,406 + Dsui_2943 0.61 -0.6
3,149,462 + Dsui_2943 0.66 -0.7
3,149,479 + Dsui_2943 0.68 -0.3
3,149,597 + Dsui_2943 0.79 -1.0
3,149,635 - Dsui_2943 0.82 -1.8
3,149,654 + Dsui_2943 0.84 -1.1

Or see this region's nucleotide sequence