Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0307 and Dsui_0308 are separated by 132 nucleotides Dsui_0308 and Dsui_0309 are separated by 2 nucleotides
Dsui_0307: Dsui_0307 - methyl-accepting chemotaxis protein, at 308,086 to 309,693
_0307
Dsui_0308: Dsui_0308 - Major Facilitator Superfamily transporter, at 309,826 to 311,151
_0308
Dsui_0309: Dsui_0309 - DNA/RNA helicase, superfamily II, at 311,154 to 312,485
_0309
Position (kb) 309
310
311
312 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 308.832 kb on + strand, within Dsui_0307 at 308.832 kb on + strand, within Dsui_0307 at 308.832 kb on + strand, within Dsui_0307 at 308.832 kb on + strand, within Dsui_0307 at 308.887 kb on + strand, within Dsui_0307 at 309.116 kb on + strand, within Dsui_0307 at 309.116 kb on + strand at 309.126 kb on + strand, within Dsui_0307 at 309.129 kb on - strand, within Dsui_0307 at 309.129 kb on - strand, within Dsui_0307 at 309.134 kb on - strand, within Dsui_0307 at 309.217 kb on - strand, within Dsui_0307 at 309.323 kb on - strand, within Dsui_0307 at 309.504 kb on + strand at 309.573 kb on - strand at 309.603 kb on + strand at 309.659 kb on + strand at 309.667 kb on - strand at 309.667 kb on - strand at 309.667 kb on - strand at 309.769 kb on + strand at 309.928 kb on - strand at 309.928 kb on - strand at 310.155 kb on + strand at 310.286 kb on - strand, within Dsui_0308 at 310.292 kb on + strand, within Dsui_0308 at 310.389 kb on + strand at 310.427 kb on + strand at 310.790 kb on - strand, within Dsui_0308 at 310.871 kb on - strand, within Dsui_0308 at 310.932 kb on + strand, within Dsui_0308 at 310.965 kb on + strand at 311.155 kb on - strand at 311.160 kb on + strand at 311.274 kb on + strand at 311.329 kb on - strand, within Dsui_0309 at 311.334 kb on + strand, within Dsui_0309 at 311.335 kb on + strand at 311.365 kb on - strand, within Dsui_0309 at 311.397 kb on + strand at 311.413 kb on - strand, within Dsui_0309 at 311.437 kb on + strand, within Dsui_0309 at 311.525 kb on + strand at 311.569 kb on + strand, within Dsui_0309 at 311.611 kb on + strand, within Dsui_0309 at 311.652 kb on - strand, within Dsui_0309 at 311.698 kb on + strand, within Dsui_0309 at 311.719 kb on + strand, within Dsui_0309 at 311.776 kb on + strand at 311.776 kb on + strand at 311.783 kb on + strand, within Dsui_0309 at 311.861 kb on + strand at 311.896 kb on + strand, within Dsui_0309 at 311.896 kb on + strand at 311.941 kb on + strand at 312.073 kb on - strand, within Dsui_0309 at 312.108 kb on + strand, within Dsui_0309 at 312.108 kb on + strand at 312.115 kb on + strand, within Dsui_0309 at 312.116 kb on - strand, within Dsui_0309
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 308,832 + Dsui_0307 0.46 -0.6 308,832 + Dsui_0307 0.46 -1.2 308,832 + Dsui_0307 0.46 -1.2 308,832 + Dsui_0307 0.46 +0.4 308,887 + Dsui_0307 0.50 -2.2 309,116 + Dsui_0307 0.64 +0.4 309,116 + +0.4 309,126 + Dsui_0307 0.65 -1.6 309,129 - Dsui_0307 0.65 -1.8 309,129 - Dsui_0307 0.65 -0.6 309,134 - Dsui_0307 0.65 -0.5 309,217 - Dsui_0307 0.70 -0.7 309,323 - Dsui_0307 0.77 +0.4 309,504 + +0.4 309,573 - -0.3 309,603 + +0.4 309,659 + +0.4 309,667 - -1.2 309,667 - -0.5 309,667 - +0.1 309,769 + -1.2 309,928 - -0.6 309,928 - +0.4 310,155 + -1.6 310,286 - Dsui_0308 0.35 -2.8 310,292 + Dsui_0308 0.35 -1.6 310,389 + +0.4 310,427 + +0.4 310,790 - Dsui_0308 0.73 -1.2 310,871 - Dsui_0308 0.79 -1.5 310,932 + Dsui_0308 0.83 -2.6 310,965 + +0.4 311,155 - -0.3 311,160 + +0.4 311,274 + -2.2 311,329 - Dsui_0309 0.13 -0.0 311,334 + Dsui_0309 0.14 -1.2 311,335 + +0.4 311,365 - Dsui_0309 0.16 -0.5 311,397 + +0.4 311,413 - Dsui_0309 0.19 -2.6 311,437 + Dsui_0309 0.21 -1.6 311,525 + +0.4 311,569 + Dsui_0309 0.31 +0.4 311,611 + Dsui_0309 0.34 -0.6 311,652 - Dsui_0309 0.37 -0.6 311,698 + Dsui_0309 0.41 -1.2 311,719 + Dsui_0309 0.42 +0.4 311,776 + +0.4 311,776 + +0.4 311,783 + Dsui_0309 0.47 -2.4 311,861 + +0.4 311,896 + Dsui_0309 0.56 +0.4 311,896 + +0.4 311,941 + +0.4 312,073 - Dsui_0309 0.69 -0.8 312,108 + Dsui_0309 0.72 -0.6 312,108 + -1.9 312,115 + Dsui_0309 0.72 +0.4 312,116 - Dsui_0309 0.72 -0.7
Or see this region's nucleotide sequence