Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3108 and Dsui_3109 are separated by 198 nucleotides Dsui_3109 and Dsui_3110 are separated by 53 nucleotides
Dsui_3108: Dsui_3108 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,327,388 to 3,330,702
_3108
Dsui_3109: Dsui_3109 - cytochrome c, mono- and diheme variants family, at 3,330,901 to 3,331,326
_3109
Dsui_3110: Dsui_3110 - nitric oxide reductase large subunit, at 3,331,380 to 3,332,756
_3110
Position (kb)
3330
3331
3332 Strain fitness (log2 ratio)
-2
-1
0
1 at 3329.989 kb on - strand, within Dsui_3108 at 3330.055 kb on + strand at 3330.107 kb on + strand at 3330.117 kb on + strand, within Dsui_3108 at 3330.384 kb on + strand at 3330.469 kb on + strand at 3330.479 kb on - strand at 3330.482 kb on - strand at 3330.482 kb on - strand at 3330.546 kb on - strand at 3330.596 kb on - strand at 3330.681 kb on - strand at 3330.681 kb on - strand at 3330.704 kb on + strand at 3330.776 kb on - strand at 3330.822 kb on - strand at 3330.822 kb on - strand at 3330.822 kb on - strand at 3330.846 kb on + strand at 3330.849 kb on + strand at 3330.856 kb on + strand at 3330.864 kb on - strand at 3330.884 kb on + strand at 3330.892 kb on - strand at 3330.972 kb on + strand, within Dsui_3109 at 3330.972 kb on + strand, within Dsui_3109 at 3330.980 kb on - strand, within Dsui_3109 at 3330.980 kb on - strand, within Dsui_3109 at 3331.043 kb on - strand at 3331.099 kb on + strand, within Dsui_3109 at 3331.141 kb on + strand, within Dsui_3109 at 3331.187 kb on - strand at 3331.191 kb on + strand, within Dsui_3109 at 3331.199 kb on - strand, within Dsui_3109 at 3331.256 kb on + strand, within Dsui_3109 at 3331.287 kb on + strand at 3331.369 kb on - strand at 3331.400 kb on - strand at 3331.456 kb on - strand at 3331.461 kb on - strand at 3331.470 kb on + strand at 3331.535 kb on - strand, within Dsui_3110 at 3331.537 kb on + strand, within Dsui_3110 at 3331.555 kb on - strand at 3331.622 kb on + strand, within Dsui_3110 at 3331.627 kb on + strand, within Dsui_3110 at 3331.627 kb on + strand, within Dsui_3110 at 3331.860 kb on + strand, within Dsui_3110 at 3331.933 kb on + strand, within Dsui_3110 at 3331.933 kb on + strand at 3331.979 kb on + strand, within Dsui_3110 at 3331.985 kb on + strand, within Dsui_3110 at 3331.987 kb on - strand at 3332.036 kb on + strand, within Dsui_3110 at 3332.044 kb on - strand, within Dsui_3110 at 3332.049 kb on + strand, within Dsui_3110 at 3332.191 kb on + strand, within Dsui_3110
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 3,329,989 - Dsui_3108 0.78 -0.1 3,330,055 + -1.1 3,330,107 + +0.5 3,330,117 + Dsui_3108 0.82 -0.5 3,330,384 + -0.5 3,330,469 + -0.5 3,330,479 - -0.1 3,330,482 - -0.2 3,330,482 - +0.6 3,330,546 - -0.5 3,330,596 - -0.4 3,330,681 - -0.8 3,330,681 - -0.2 3,330,704 + -1.1 3,330,776 - +0.5 3,330,822 - -0.5 3,330,822 - -1.1 3,330,822 - -1.1 3,330,846 + -1.8 3,330,849 + +0.5 3,330,856 + -0.5 3,330,864 - -0.5 3,330,884 + -0.5 3,330,892 - -1.5 3,330,972 + Dsui_3109 0.17 +0.5 3,330,972 + Dsui_3109 0.17 +0.5 3,330,980 - Dsui_3109 0.19 -1.1 3,330,980 - Dsui_3109 0.19 -1.1 3,331,043 - +0.5 3,331,099 + Dsui_3109 0.46 +0.5 3,331,141 + Dsui_3109 0.56 -2.3 3,331,187 - +0.5 3,331,191 + Dsui_3109 0.68 -2.7 3,331,199 - Dsui_3109 0.70 -1.1 3,331,256 + Dsui_3109 0.83 +0.5 3,331,287 + -1.1 3,331,369 - +0.5 3,331,400 - -1.5 3,331,456 - +0.5 3,331,461 - +0.5 3,331,470 + -1.5 3,331,535 - Dsui_3110 0.11 +0.5 3,331,537 + Dsui_3110 0.11 -0.5 3,331,555 - -0.5 3,331,622 + Dsui_3110 0.18 +0.5 3,331,627 + Dsui_3110 0.18 -0.5 3,331,627 + Dsui_3110 0.18 -2.1 3,331,860 + Dsui_3110 0.35 -2.3 3,331,933 + Dsui_3110 0.40 -1.1 3,331,933 + +0.5 3,331,979 + Dsui_3110 0.44 +0.5 3,331,985 + Dsui_3110 0.44 -1.5 3,331,987 - +0.5 3,332,036 + Dsui_3110 0.48 +0.5 3,332,044 - Dsui_3110 0.48 +0.5 3,332,049 + Dsui_3110 0.49 +0.5 3,332,191 + Dsui_3110 0.59 -1.1
Or see this region's nucleotide sequence