Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1399 and Dsui_1400 overlap by 1 nucleotides Dsui_1400 and Dsui_1401 are separated by 83 nucleotides Dsui_1401 and Dsui_1402 are separated by 97 nucleotides Dsui_1402 and Dsui_1403 overlap by 1 nucleotides
Dsui_1399: Dsui_1399 - conserved hypothetical integral membrane protein, at 1,459,743 to 1,460,525
_1399
Dsui_1400: Dsui_1400 - ABC-type transport system involved in resistance to organic solvents, periplasmic component, at 1,460,525 to 1,460,995
_1400
Dsui_1401: Dsui_1401 - surface lipoprotein, at 1,461,079 to 1,461,798
_1401
Dsui_1402: Dsui_1402 - ABC-type transport system involved in resistance to organic solvents, auxiliary component, at 1,461,896 to 1,462,525
_1402
Dsui_1403: Dsui_1403 - putative NTP binding protein (contains STAS domain), at 1,462,525 to 1,462,812
_1403
Position (kb)
1461
1462 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1460.123 kb on + strand, within Dsui_1399 at 1460.123 kb on + strand, within Dsui_1399 at 1460.131 kb on - strand, within Dsui_1399 at 1460.199 kb on + strand, within Dsui_1399 at 1460.217 kb on + strand, within Dsui_1399 at 1460.229 kb on + strand, within Dsui_1399 at 1460.255 kb on + strand, within Dsui_1399 at 1460.450 kb on + strand at 1460.471 kb on + strand at 1460.486 kb on + strand at 1460.496 kb on - strand at 1460.529 kb on + strand at 1460.529 kb on + strand at 1460.529 kb on + strand at 1460.590 kb on - strand, within Dsui_1400 at 1460.684 kb on - strand, within Dsui_1400 at 1460.747 kb on + strand, within Dsui_1400 at 1460.780 kb on + strand, within Dsui_1400 at 1460.837 kb on - strand, within Dsui_1400 at 1460.856 kb on - strand, within Dsui_1400 at 1460.859 kb on + strand, within Dsui_1400 at 1460.863 kb on + strand, within Dsui_1400 at 1460.867 kb on - strand, within Dsui_1400 at 1460.949 kb on + strand at 1460.986 kb on - strand at 1461.062 kb on - strand at 1461.095 kb on - strand at 1461.099 kb on + strand at 1461.120 kb on + strand at 1461.120 kb on + strand at 1461.150 kb on - strand at 1461.190 kb on + strand, within Dsui_1401 at 1461.191 kb on - strand, within Dsui_1401 at 1461.228 kb on + strand, within Dsui_1401 at 1461.240 kb on + strand, within Dsui_1401 at 1461.284 kb on - strand at 1461.291 kb on + strand, within Dsui_1401 at 1461.637 kb on - strand at 1461.879 kb on + strand at 1462.045 kb on + strand, within Dsui_1402 at 1462.141 kb on + strand, within Dsui_1402 at 1462.336 kb on + strand, within Dsui_1402 at 1462.514 kb on + strand at 1462.562 kb on + strand, within Dsui_1403
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 1,460,123 + Dsui_1399 0.49 -2.8 1,460,123 + Dsui_1399 0.49 -1.6 1,460,131 - Dsui_1399 0.50 +0.3 1,460,199 + Dsui_1399 0.58 -2.5 1,460,217 + Dsui_1399 0.61 -1.9 1,460,229 + Dsui_1399 0.62 -2.2 1,460,255 + Dsui_1399 0.65 -3.8 1,460,450 + -1.9 1,460,471 + -3.4 1,460,486 + -1.6 1,460,496 - +0.3 1,460,529 + -2.3 1,460,529 + -2.4 1,460,529 + -2.4 1,460,590 - Dsui_1400 0.14 -2.3 1,460,684 - Dsui_1400 0.34 -1.3 1,460,747 + Dsui_1400 0.47 -1.5 1,460,780 + Dsui_1400 0.54 -2.1 1,460,837 - Dsui_1400 0.66 +0.3 1,460,856 - Dsui_1400 0.70 +0.3 1,460,859 + Dsui_1400 0.71 -2.9 1,460,863 + Dsui_1400 0.72 -2.5 1,460,867 - Dsui_1400 0.73 +0.3 1,460,949 + -2.4 1,460,986 - -0.7 1,461,062 - +0.3 1,461,095 - +0.3 1,461,099 + -0.6 1,461,120 + -2.5 1,461,120 + -3.1 1,461,150 - -0.7 1,461,190 + Dsui_1401 0.15 -2.8 1,461,191 - Dsui_1401 0.16 +0.3 1,461,228 + Dsui_1401 0.21 -2.6 1,461,240 + Dsui_1401 0.22 -4.1 1,461,284 - +0.3 1,461,291 + Dsui_1401 0.29 -2.6 1,461,637 - +0.3 1,461,879 + -1.3 1,462,045 + Dsui_1402 0.24 -2.3 1,462,141 + Dsui_1402 0.39 -3.5 1,462,336 + Dsui_1402 0.70 -2.1 1,462,514 + -0.5 1,462,562 + Dsui_1403 0.13 -2.5
Or see this region's nucleotide sequence