Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1359 and Dsui_1360 are separated by 112 nucleotides Dsui_1360 and Dsui_1361 are separated by 184 nucleotides Dsui_1361 and Dsui_1362 are separated by 1 nucleotides
Dsui_1359: Dsui_1359 - orotidine 5''-phosphate decarboxylase, subfamily 2, at 1,413,332 to 1,414,153
_1359
Dsui_1360: Dsui_1360 - hypothetical protein, at 1,414,266 to 1,415,540
_1360
Dsui_1361: Dsui_1361 - diguanylate cyclase (GGDEF) domain-containing protein, at 1,415,725 to 1,416,501
_1361
Dsui_1362: Dsui_1362 - protein of unknown function (DUF1987), at 1,416,503 to 1,416,880
_1362
Position (kb)
1414
1415
1416 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1414.377 kb on + strand at 1414.450 kb on - strand, within Dsui_1360 at 1414.574 kb on + strand at 1414.578 kb on - strand, within Dsui_1360 at 1414.605 kb on + strand, within Dsui_1360 at 1414.676 kb on + strand at 1414.680 kb on - strand at 1414.809 kb on - strand at 1414.819 kb on - strand, within Dsui_1360 at 1414.855 kb on - strand at 1414.884 kb on + strand, within Dsui_1360 at 1414.958 kb on + strand, within Dsui_1360 at 1415.001 kb on - strand at 1415.031 kb on + strand at 1415.076 kb on + strand, within Dsui_1360 at 1415.266 kb on + strand, within Dsui_1360 at 1415.302 kb on - strand, within Dsui_1360 at 1415.339 kb on + strand, within Dsui_1360 at 1415.339 kb on + strand at 1415.346 kb on + strand at 1415.353 kb on + strand, within Dsui_1360 at 1415.454 kb on - strand at 1415.456 kb on + strand at 1415.728 kb on + strand at 1415.728 kb on + strand at 1415.728 kb on + strand at 1415.736 kb on - strand at 1415.827 kb on + strand, within Dsui_1361 at 1415.832 kb on + strand, within Dsui_1361 at 1415.832 kb on + strand, within Dsui_1361 at 1416.135 kb on + strand, within Dsui_1361 at 1416.152 kb on + strand, within Dsui_1361 at 1416.160 kb on - strand, within Dsui_1361 at 1416.201 kb on + strand, within Dsui_1361 at 1416.214 kb on - strand, within Dsui_1361 at 1416.245 kb on + strand, within Dsui_1361 at 1416.245 kb on + strand, within Dsui_1361 at 1416.257 kb on + strand at 1416.285 kb on + strand, within Dsui_1361 at 1416.311 kb on + strand, within Dsui_1361 at 1416.319 kb on - strand, within Dsui_1361 at 1416.319 kb on - strand, within Dsui_1361 at 1416.319 kb on - strand, within Dsui_1361 at 1416.319 kb on - strand, within Dsui_1361 at 1416.351 kb on + strand, within Dsui_1361
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 1,414,377 + +0.2 1,414,450 - Dsui_1360 0.14 -2.6 1,414,574 + -0.8 1,414,578 - Dsui_1360 0.24 -2.3 1,414,605 + Dsui_1360 0.27 +0.2 1,414,676 + -0.8 1,414,680 - -0.8 1,414,809 - -1.8 1,414,819 - Dsui_1360 0.43 -3.2 1,414,855 - +0.2 1,414,884 + Dsui_1360 0.48 -0.8 1,414,958 + Dsui_1360 0.54 -1.3 1,415,001 - +0.2 1,415,031 + +0.2 1,415,076 + Dsui_1360 0.64 -1.3 1,415,266 + Dsui_1360 0.78 +0.2 1,415,302 - Dsui_1360 0.81 -1.3 1,415,339 + Dsui_1360 0.84 +0.2 1,415,339 + +0.2 1,415,346 + +0.2 1,415,353 + Dsui_1360 0.85 -0.3 1,415,454 - -2.1 1,415,456 + -1.8 1,415,728 + -0.8 1,415,728 + -0.8 1,415,728 + -2.6 1,415,736 - -0.9 1,415,827 + Dsui_1361 0.13 -2.3 1,415,832 + Dsui_1361 0.14 +1.2 1,415,832 + Dsui_1361 0.14 +0.1 1,416,135 + Dsui_1361 0.53 -3.3 1,416,152 + Dsui_1361 0.55 +0.2 1,416,160 - Dsui_1361 0.56 -0.5 1,416,201 + Dsui_1361 0.61 +0.2 1,416,214 - Dsui_1361 0.63 -0.2 1,416,245 + Dsui_1361 0.67 -1.3 1,416,245 + Dsui_1361 0.67 +0.2 1,416,257 + +0.2 1,416,285 + Dsui_1361 0.72 -1.3 1,416,311 + Dsui_1361 0.75 +0.2 1,416,319 - Dsui_1361 0.76 -0.7 1,416,319 - Dsui_1361 0.76 -0.4 1,416,319 - Dsui_1361 0.76 -0.4 1,416,319 - Dsui_1361 0.76 -0.9 1,416,351 + Dsui_1361 0.81 +0.2
Or see this region's nucleotide sequence