Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03735 and MMP_RS03740 overlap by 1 nucleotides MMP_RS03740 and MMP_RS03745 are separated by 10 nucleotides
MMP_RS03735: MMP_RS03735 - indolepyruvate ferredoxin oxidoreductase subunit alpha, at 706,252 to 707,988
_RS03735
MMP_RS03740: MMP_RS03740 - indolepyruvate oxidoreductase subunit beta, at 707,988 to 708,554
_RS03740
MMP_RS03745: MMP_RS03745 - phenylacetate--CoA ligase, at 708,565 to 709,863
_RS03745
Position (kb) 707
708
709 Strain fitness (log2 ratio) -1
0
1 at 707.079 kb on + strand, within MMP_RS03735 at 707.302 kb on + strand, within MMP_RS03735 at 707.392 kb on + strand, within MMP_RS03735 at 707.969 kb on - strand at 707.969 kb on - strand at 707.970 kb on + strand at 707.970 kb on + strand at 707.981 kb on - strand at 708.133 kb on + strand, within MMP_RS03740 at 708.226 kb on + strand, within MMP_RS03740 at 708.263 kb on + strand, within MMP_RS03740 at 708.292 kb on - strand, within MMP_RS03740 at 708.413 kb on + strand, within MMP_RS03740 at 708.553 kb on + strand at 708.582 kb on - strand at 708.624 kb on - strand at 708.646 kb on + strand at 708.656 kb on + strand at 708.750 kb on - strand, within MMP_RS03745 at 708.792 kb on + strand, within MMP_RS03745 at 708.864 kb on + strand, within MMP_RS03745 at 709.115 kb on + strand, within MMP_RS03745 at 709.123 kb on - strand, within MMP_RS03745 at 709.262 kb on - strand, within MMP_RS03745 at 709.262 kb on - strand, within MMP_RS03745 at 709.265 kb on + strand, within MMP_RS03745 at 709.413 kb on + strand, within MMP_RS03745 at 709.416 kb on - strand, within MMP_RS03745 at 709.417 kb on + strand, within MMP_RS03745 at 709.417 kb on + strand, within MMP_RS03745
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 707,079 + MMP_RS03735 0.48 -0.5 707,302 + MMP_RS03735 0.60 -0.0 707,392 + MMP_RS03735 0.66 -0.3 707,969 - +0.3 707,969 - +0.4 707,970 + -0.4 707,970 + -0.2 707,981 - -0.7 708,133 + MMP_RS03740 0.26 -0.2 708,226 + MMP_RS03740 0.42 +0.2 708,263 + MMP_RS03740 0.49 +0.1 708,292 - MMP_RS03740 0.54 -0.1 708,413 + MMP_RS03740 0.75 -0.2 708,553 + +0.2 708,582 - -0.0 708,624 - -0.2 708,646 + -0.6 708,656 + +0.0 708,750 - MMP_RS03745 0.14 +0.1 708,792 + MMP_RS03745 0.17 +1.4 708,864 + MMP_RS03745 0.23 +0.5 709,115 + MMP_RS03745 0.42 +0.0 709,123 - MMP_RS03745 0.43 -0.2 709,262 - MMP_RS03745 0.54 -0.0 709,262 - MMP_RS03745 0.54 -0.3 709,265 + MMP_RS03745 0.54 +0.3 709,413 + MMP_RS03745 0.65 -0.0 709,416 - MMP_RS03745 0.66 -0.0 709,417 + MMP_RS03745 0.66 +0.1 709,417 + MMP_RS03745 0.66 -0.3
Or see this region's nucleotide sequence