Strain Fitness in Dechlorosoma suillum PS around Dsui_2922

Experiment: ALP with Cisplatin 0.0009 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2921 and Dsui_2922 are separated by 18 nucleotidesDsui_2922 and Dsui_2923 are separated by 199 nucleotides Dsui_2921: Dsui_2921 - isochorismate synthase family protein, at 3,122,236 to 3,123,675 _2921 Dsui_2922: Dsui_2922 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase, at 3,123,694 to 3,125,469 _2922 Dsui_2923: Dsui_2923 - esterase/lipase, at 3,125,669 to 3,126,511 _2923 Position (kb) 3123 3124 3125 3126Strain fitness (log2 ratio) -2 -1 0 1at 3122.713 kb on + strand, within Dsui_2921at 3122.716 kb on - strand, within Dsui_2921at 3122.804 kb on - strandat 3122.908 kb on + strandat 3123.106 kb on + strand, within Dsui_2921at 3123.109 kb on - strandat 3123.496 kb on + strand, within Dsui_2921at 3123.797 kb on + strandat 3123.815 kb on + strandat 3123.875 kb on + strand, within Dsui_2922at 3123.899 kb on - strandat 3123.937 kb on - strand, within Dsui_2922at 3124.034 kb on + strand, within Dsui_2922at 3124.056 kb on + strand, within Dsui_2922at 3124.121 kb on + strand, within Dsui_2922at 3124.189 kb on + strand, within Dsui_2922at 3124.256 kb on + strand, within Dsui_2922at 3124.256 kb on + strand, within Dsui_2922at 3124.397 kb on - strandat 3124.431 kb on + strand, within Dsui_2922at 3124.431 kb on + strand, within Dsui_2922at 3124.461 kb on - strandat 3124.549 kb on + strand, within Dsui_2922at 3124.557 kb on - strand, within Dsui_2922at 3124.580 kb on + strandat 3124.655 kb on + strand, within Dsui_2922at 3124.657 kb on - strandat 3124.812 kb on + strand, within Dsui_2922at 3124.859 kb on + strand, within Dsui_2922at 3124.884 kb on + strand, within Dsui_2922at 3124.947 kb on + strand, within Dsui_2922at 3125.057 kb on - strandat 3125.067 kb on - strandat 3125.441 kb on - strandat 3125.599 kb on + strandat 3125.607 kb on - strandat 3125.808 kb on + strand, within Dsui_2923at 3125.808 kb on + strand, within Dsui_2923at 3125.814 kb on - strandat 3125.816 kb on - strandat 3125.816 kb on - strandat 3125.949 kb on + strand, within Dsui_2923at 3126.057 kb on + strand, within Dsui_2923at 3126.086 kb on + strand, within Dsui_2923at 3126.094 kb on - strandat 3126.097 kb on + strand, within Dsui_2923at 3126.097 kb on + strand, within Dsui_2923at 3126.123 kb on + strand, within Dsui_2923at 3126.201 kb on + strandat 3126.209 kb on - strandat 3126.290 kb on - strand, within Dsui_2923at 3126.341 kb on - strandat 3126.360 kb on + strand, within Dsui_2923at 3126.405 kb on + strand, within Dsui_2923at 3126.411 kb on - strand, within Dsui_2923at 3126.411 kb on - strand, within Dsui_2923

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml
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3,122,713 + Dsui_2921 0.33 -2.4
3,122,716 - Dsui_2921 0.33 -1.2
3,122,804 - -0.2
3,122,908 + +0.8
3,123,106 + Dsui_2921 0.60 -0.6
3,123,109 - +0.8
3,123,496 + Dsui_2921 0.88 -2.2
3,123,797 + +0.8
3,123,815 + +0.8
3,123,875 + Dsui_2922 0.10 -1.8
3,123,899 - -1.8
3,123,937 - Dsui_2922 0.14 -0.2
3,124,034 + Dsui_2922 0.19 -0.6
3,124,056 + Dsui_2922 0.20 -1.2
3,124,121 + Dsui_2922 0.24 -1.2
3,124,189 + Dsui_2922 0.28 +0.8
3,124,256 + Dsui_2922 0.32 -0.2
3,124,256 + Dsui_2922 0.32 +0.8
3,124,397 - +0.8
3,124,431 + Dsui_2922 0.41 -2.0
3,124,431 + Dsui_2922 0.41 -1.8
3,124,461 - -0.8
3,124,549 + Dsui_2922 0.48 -0.8
3,124,557 - Dsui_2922 0.49 -1.6
3,124,580 + +0.8
3,124,655 + Dsui_2922 0.54 -1.2
3,124,657 - +0.8
3,124,812 + Dsui_2922 0.63 -1.2
3,124,859 + Dsui_2922 0.66 -1.2
3,124,884 + Dsui_2922 0.67 -1.2
3,124,947 + Dsui_2922 0.71 -1.6
3,125,057 - +0.8
3,125,067 - +0.8
3,125,441 - -0.3
3,125,599 + -0.8
3,125,607 - -0.3
3,125,808 + Dsui_2923 0.16 -0.2
3,125,808 + Dsui_2923 0.16 -0.5
3,125,814 - +0.7
3,125,816 - +0.7
3,125,816 - +0.7
3,125,949 + Dsui_2923 0.33 -0.3
3,126,057 + Dsui_2923 0.46 -0.2
3,126,086 + Dsui_2923 0.49 -0.6
3,126,094 - +0.7
3,126,097 + Dsui_2923 0.51 -0.4
3,126,097 + Dsui_2923 0.51 -0.1
3,126,123 + Dsui_2923 0.54 -0.0
3,126,201 + -1.6
3,126,209 - -1.6
3,126,290 - Dsui_2923 0.74 -2.7
3,126,341 - +0.7
3,126,360 + Dsui_2923 0.82 +0.7
3,126,405 + Dsui_2923 0.87 +0.6
3,126,411 - Dsui_2923 0.88 -0.8
3,126,411 - Dsui_2923 0.88 +0.7

Or see this region's nucleotide sequence