Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS26180

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS26170 and BWI76_RS26175 are separated by 168 nucleotidesBWI76_RS26175 and BWI76_RS26180 are separated by 19 nucleotidesBWI76_RS26180 and BWI76_RS26185 are separated by 59 nucleotidesBWI76_RS26185 and BWI76_RS26190 are separated by 212 nucleotides BWI76_RS26170: BWI76_RS26170 - transcriptional regulator MalT, at 5,410,347 to 5,413,052 _RS26170 BWI76_RS26175: BWI76_RS26175 - DeoR/GlpR family transcriptional regulator, at 5,413,221 to 5,413,979 _RS26175 BWI76_RS26180: BWI76_RS26180 - rhomboid family intramembrane serine protease GlpG, at 5,413,999 to 5,414,829 _RS26180 BWI76_RS26185: BWI76_RS26185 - thiosulfate sulfurtransferase, at 5,414,889 to 5,415,218 _RS26185 BWI76_RS26190: BWI76_RS26190 - glycerol-3-phosphate dehydrogenase, at 5,415,431 to 5,416,939 _RS26190 Position (kb) 5413 5414 5415Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 5413.077 kb on + strandat 5413.290 kb on + strandat 5413.290 kb on + strandat 5413.291 kb on + strandat 5413.300 kb on + strand, within BWI76_RS26175at 5413.423 kb on - strand, within BWI76_RS26175at 5413.439 kb on - strand, within BWI76_RS26175at 5413.514 kb on - strand, within BWI76_RS26175at 5413.786 kb on + strand, within BWI76_RS26175at 5413.805 kb on - strand, within BWI76_RS26175at 5414.067 kb on + strandat 5414.137 kb on - strand, within BWI76_RS26180at 5414.249 kb on + strand, within BWI76_RS26180at 5414.270 kb on + strand, within BWI76_RS26180at 5414.384 kb on - strand, within BWI76_RS26180at 5414.395 kb on + strand, within BWI76_RS26180at 5414.395 kb on + strand, within BWI76_RS26180at 5414.447 kb on + strand, within BWI76_RS26180at 5414.608 kb on + strand, within BWI76_RS26180at 5414.785 kb on + strandat 5414.793 kb on - strandat 5414.886 kb on + strandat 5414.964 kb on - strand, within BWI76_RS26185at 5415.134 kb on - strand, within BWI76_RS26185at 5415.210 kb on - strandat 5415.280 kb on + strandat 5415.322 kb on - strandat 5415.341 kb on + strandat 5415.506 kb on + strandat 5415.564 kb on + strandat 5415.624 kb on + strand, within BWI76_RS26190at 5415.748 kb on - strand, within BWI76_RS26190

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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5,413,077 + +1.3
5,413,290 + +4.2
5,413,290 + +3.9
5,413,291 + +4.3
5,413,300 + BWI76_RS26175 0.10 +3.3
5,413,423 - BWI76_RS26175 0.27 +4.8
5,413,439 - BWI76_RS26175 0.29 +4.5
5,413,514 - BWI76_RS26175 0.39 +4.8
5,413,786 + BWI76_RS26175 0.74 +4.6
5,413,805 - BWI76_RS26175 0.77 +4.2
5,414,067 + +5.8
5,414,137 - BWI76_RS26180 0.17 -1.6
5,414,249 + BWI76_RS26180 0.30 +5.0
5,414,270 + BWI76_RS26180 0.33 +4.7
5,414,384 - BWI76_RS26180 0.46 +0.6
5,414,395 + BWI76_RS26180 0.48 +2.1
5,414,395 + BWI76_RS26180 0.48 +1.8
5,414,447 + BWI76_RS26180 0.54 +3.0
5,414,608 + BWI76_RS26180 0.73 +2.2
5,414,785 + +2.0
5,414,793 - +1.6
5,414,886 + -1.7
5,414,964 - BWI76_RS26185 0.23 -0.6
5,415,134 - BWI76_RS26185 0.74 +0.2
5,415,210 - +0.4
5,415,280 + -1.6
5,415,322 - -1.0
5,415,341 + -1.1
5,415,506 + +0.3
5,415,564 + +1.6
5,415,624 + BWI76_RS26190 0.13 -0.6
5,415,748 - BWI76_RS26190 0.21 +0.6

Or see this region's nucleotide sequence