Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08185

Experiment: R2A with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS08165 and RR42_RS08170 overlap by 4 nucleotidesRR42_RS08170 and RR42_RS08175 overlap by 4 nucleotidesRR42_RS08175 and RR42_RS08180 overlap by 4 nucleotidesRR42_RS08180 and RR42_RS08185 overlap by 4 nucleotidesRR42_RS08185 and RR42_RS08190 are separated by 25 nucleotidesRR42_RS08190 and RR42_RS08195 are separated by 238 nucleotides RR42_RS08165: RR42_RS08165 - hypothetical protein, at 1,739,231 to 1,739,686 _RS08165 RR42_RS08170: RR42_RS08170 - hypothetical protein, at 1,739,683 to 1,740,042 _RS08170 RR42_RS08175: RR42_RS08175 - hypothetical protein, at 1,740,039 to 1,740,311 _RS08175 RR42_RS08180: RR42_RS08180 - hypothetical protein, at 1,740,308 to 1,740,577 _RS08180 RR42_RS08185: RR42_RS08185 - hypothetical protein, at 1,740,574 to 1,741,428 _RS08185 RR42_RS08190: RR42_RS08190 - hypothetical protein, at 1,741,454 to 1,741,774 _RS08190 RR42_RS08195: RR42_RS08195 - hypothetical protein, at 1,742,013 to 1,742,531 _RS08195 Position (kb) 1740 1741 1742Strain fitness (log2 ratio) -3 -2 -1 0 1at 1739.628 kb on - strand, within RR42_RS08165at 1739.771 kb on - strand, within RR42_RS08170at 1739.792 kb on - strand, within RR42_RS08170at 1739.886 kb on - strand, within RR42_RS08170at 1739.886 kb on - strand, within RR42_RS08170at 1740.067 kb on - strand, within RR42_RS08175at 1740.322 kb on - strandat 1740.322 kb on - strandat 1740.459 kb on - strand, within RR42_RS08180at 1740.571 kb on - strandat 1740.617 kb on - strandat 1740.695 kb on - strand, within RR42_RS08185at 1740.695 kb on - strand, within RR42_RS08185at 1740.800 kb on - strand, within RR42_RS08185at 1741.371 kb on - strandat 1741.755 kb on - strandat 1741.958 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml
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1,739,628 - RR42_RS08165 0.87 +0.8
1,739,771 - RR42_RS08170 0.24 +0.9
1,739,792 - RR42_RS08170 0.30 -1.6
1,739,886 - RR42_RS08170 0.56 +1.5
1,739,886 - RR42_RS08170 0.56 -3.6
1,740,067 - RR42_RS08175 0.10 -0.2
1,740,322 - +1.2
1,740,322 - +0.0
1,740,459 - RR42_RS08180 0.56 -1.0
1,740,571 - +0.0
1,740,617 - -0.6
1,740,695 - RR42_RS08185 0.14 -1.1
1,740,695 - RR42_RS08185 0.14 -2.1
1,740,800 - RR42_RS08185 0.26 -0.7
1,741,371 - +0.4
1,741,755 - +0.1
1,741,958 + -2.3

Or see this region's nucleotide sequence