Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06255

Experiment: R2A with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS06250 and RR42_RS06255 are separated by 45 nucleotidesRR42_RS06255 and RR42_RS06260 are separated by 79 nucleotidesRR42_RS06260 and RR42_RS06265 are separated by 121 nucleotides RR42_RS06250: RR42_RS06250 - dihydrodipicolinate synthase, at 1,371,093 to 1,371,977 _RS06250 RR42_RS06255: RR42_RS06255 - lipoprotein, at 1,372,023 to 1,373,234 _RS06255 RR42_RS06260: RR42_RS06260 - MBL fold metallo-hydrolase, at 1,373,314 to 1,374,102 _RS06260 RR42_RS06265: RR42_RS06265 - hypothetical protein, at 1,374,224 to 1,374,448 _RS06265 Position (kb) 1372 1373 1374Strain fitness (log2 ratio) -2 -1 0 1at 1371.417 kb on + strand, within RR42_RS06250at 1371.417 kb on + strand, within RR42_RS06250at 1371.495 kb on + strand, within RR42_RS06250at 1371.648 kb on + strand, within RR42_RS06250at 1371.648 kb on + strand, within RR42_RS06250at 1373.007 kb on + strand, within RR42_RS06255at 1373.007 kb on + strand, within RR42_RS06255at 1373.017 kb on - strand, within RR42_RS06255at 1373.525 kb on - strand, within RR42_RS06260at 1373.555 kb on + strand, within RR42_RS06260at 1373.559 kb on + strand, within RR42_RS06260at 1373.559 kb on + strand, within RR42_RS06260at 1373.560 kb on - strand, within RR42_RS06260at 1373.560 kb on - strand, within RR42_RS06260at 1373.560 kb on - strand, within RR42_RS06260at 1373.560 kb on - strand, within RR42_RS06260at 1373.560 kb on - strand, within RR42_RS06260at 1373.560 kb on - strand, within RR42_RS06260at 1373.560 kb on - strand, within RR42_RS06260at 1373.618 kb on + strand, within RR42_RS06260at 1373.618 kb on + strand, within RR42_RS06260at 1373.619 kb on - strand, within RR42_RS06260at 1373.619 kb on - strand, within RR42_RS06260at 1373.619 kb on - strand, within RR42_RS06260at 1373.619 kb on - strand, within RR42_RS06260at 1373.619 kb on - strand, within RR42_RS06260at 1373.619 kb on - strand, within RR42_RS06260at 1373.674 kb on + strand, within RR42_RS06260at 1373.674 kb on + strand, within RR42_RS06260at 1373.675 kb on - strand, within RR42_RS06260at 1373.717 kb on + strand, within RR42_RS06260at 1373.717 kb on + strand, within RR42_RS06260at 1373.718 kb on - strand, within RR42_RS06260at 1373.718 kb on - strand, within RR42_RS06260at 1373.718 kb on - strand, within RR42_RS06260at 1373.773 kb on + strand, within RR42_RS06260at 1373.774 kb on - strand, within RR42_RS06260at 1373.774 kb on - strand, within RR42_RS06260at 1373.821 kb on - strand, within RR42_RS06260at 1373.860 kb on + strand, within RR42_RS06260at 1373.991 kb on + strand, within RR42_RS06260at 1374.140 kb on + strandat 1374.147 kb on + strandat 1374.148 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml
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1,371,417 + RR42_RS06250 0.37 +0.5
1,371,417 + RR42_RS06250 0.37 +0.2
1,371,495 + RR42_RS06250 0.45 -0.1
1,371,648 + RR42_RS06250 0.63 -1.5
1,371,648 + RR42_RS06250 0.63 -1.6
1,373,007 + RR42_RS06255 0.81 -0.8
1,373,007 + RR42_RS06255 0.81 -0.5
1,373,017 - RR42_RS06255 0.82 -1.6
1,373,525 - RR42_RS06260 0.27 -1.8
1,373,555 + RR42_RS06260 0.31 +1.1
1,373,559 + RR42_RS06260 0.31 -0.4
1,373,559 + RR42_RS06260 0.31 +1.5
1,373,560 - RR42_RS06260 0.31 -0.1
1,373,560 - RR42_RS06260 0.31 +0.0
1,373,560 - RR42_RS06260 0.31 -1.2
1,373,560 - RR42_RS06260 0.31 -1.8
1,373,560 - RR42_RS06260 0.31 +0.3
1,373,560 - RR42_RS06260 0.31 -1.6
1,373,560 - RR42_RS06260 0.31 -0.1
1,373,618 + RR42_RS06260 0.39 -0.1
1,373,618 + RR42_RS06260 0.39 -0.2
1,373,619 - RR42_RS06260 0.39 -0.3
1,373,619 - RR42_RS06260 0.39 -0.4
1,373,619 - RR42_RS06260 0.39 -0.5
1,373,619 - RR42_RS06260 0.39 -0.9
1,373,619 - RR42_RS06260 0.39 -0.6
1,373,619 - RR42_RS06260 0.39 -0.5
1,373,674 + RR42_RS06260 0.46 -0.0
1,373,674 + RR42_RS06260 0.46 -0.7
1,373,675 - RR42_RS06260 0.46 -1.2
1,373,717 + RR42_RS06260 0.51 -0.6
1,373,717 + RR42_RS06260 0.51 +0.1
1,373,718 - RR42_RS06260 0.51 -0.6
1,373,718 - RR42_RS06260 0.51 +0.2
1,373,718 - RR42_RS06260 0.51 -0.3
1,373,773 + RR42_RS06260 0.58 +0.9
1,373,774 - RR42_RS06260 0.58 +0.1
1,373,774 - RR42_RS06260 0.58 -0.8
1,373,821 - RR42_RS06260 0.64 +0.2
1,373,860 + RR42_RS06260 0.69 -0.9
1,373,991 + RR42_RS06260 0.86 -1.0
1,374,140 + -0.7
1,374,147 + -1.9
1,374,148 - -0.5

Or see this region's nucleotide sequence