Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1513

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1512 and Pf1N1B4_1513 overlap by 4 nucleotidesPf1N1B4_1513 and Pf1N1B4_1514 overlap by 14 nucleotides Pf1N1B4_1512 - FIG021862: membrane protein, exporter, at 1,744,072 to 1,746,390 _1512 Pf1N1B4_1513 - FIG064705: cation/hydrogen antiporter, at 1,746,387 to 1,747,547 _1513 Pf1N1B4_1514 - FIG022199: FAD-binding protein, at 1,747,534 to 1,748,781 _1514 Position (kb) 1746 1747 1748Strain fitness (log2 ratio) -1 0 1 2at 1745.468 kb on - strand, within Pf1N1B4_1512at 1745.475 kb on + strand, within Pf1N1B4_1512at 1745.475 kb on + strand, within Pf1N1B4_1512at 1745.476 kb on - strand, within Pf1N1B4_1512at 1745.587 kb on + strand, within Pf1N1B4_1512at 1745.587 kb on + strand, within Pf1N1B4_1512at 1745.587 kb on + strand, within Pf1N1B4_1512at 1745.587 kb on + strand, within Pf1N1B4_1512at 1745.587 kb on + strand, within Pf1N1B4_1512at 1745.588 kb on - strand, within Pf1N1B4_1512at 1745.591 kb on + strand, within Pf1N1B4_1512at 1745.592 kb on - strand, within Pf1N1B4_1512at 1745.592 kb on - strand, within Pf1N1B4_1512at 1746.519 kb on + strand, within Pf1N1B4_1513at 1746.519 kb on + strand, within Pf1N1B4_1513at 1746.519 kb on + strand, within Pf1N1B4_1513at 1746.519 kb on + strand, within Pf1N1B4_1513at 1746.519 kb on + strand, within Pf1N1B4_1513at 1746.519 kb on + strand, within Pf1N1B4_1513at 1746.519 kb on + strand, within Pf1N1B4_1513at 1746.520 kb on - strand, within Pf1N1B4_1513at 1746.520 kb on - strand, within Pf1N1B4_1513at 1746.520 kb on - strandat 1746.520 kb on - strand, within Pf1N1B4_1513at 1746.520 kb on - strand, within Pf1N1B4_1513at 1746.520 kb on - strand, within Pf1N1B4_1513at 1746.693 kb on - strand, within Pf1N1B4_1513at 1746.804 kb on + strand, within Pf1N1B4_1513at 1746.804 kb on + strand, within Pf1N1B4_1513at 1746.805 kb on - strand, within Pf1N1B4_1513at 1746.805 kb on - strand, within Pf1N1B4_1513at 1746.805 kb on - strand, within Pf1N1B4_1513at 1746.805 kb on - strand, within Pf1N1B4_1513at 1746.805 kb on - strand, within Pf1N1B4_1513at 1746.805 kb on - strand, within Pf1N1B4_1513at 1746.805 kb on - strand, within Pf1N1B4_1513at 1746.805 kb on - strand, within Pf1N1B4_1513at 1746.805 kb on - strand, within Pf1N1B4_1513at 1746.810 kb on + strand, within Pf1N1B4_1513at 1746.811 kb on - strand, within Pf1N1B4_1513at 1746.930 kb on - strand, within Pf1N1B4_1513at 1747.080 kb on + strand, within Pf1N1B4_1513at 1747.354 kb on + strand, within Pf1N1B4_1513at 1747.431 kb on + strand, within Pf1N1B4_1513at 1747.431 kb on + strand, within Pf1N1B4_1513at 1747.565 kb on + strandat 1747.620 kb on + strandat 1747.792 kb on + strand, within Pf1N1B4_1514at 1747.793 kb on - strand, within Pf1N1B4_1514at 1747.793 kb on - strandat 1747.793 kb on - strand, within Pf1N1B4_1514at 1747.986 kb on + strand, within Pf1N1B4_1514at 1748.328 kb on - strand, within Pf1N1B4_1514at 1748.536 kb on - strand, within Pf1N1B4_1514

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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1,745,468 - Pf1N1B4_1512 0.60 +0.3
1,745,475 + Pf1N1B4_1512 0.61 +0.9
1,745,475 + Pf1N1B4_1512 0.61 +1.1
1,745,476 - Pf1N1B4_1512 0.61 +2.6
1,745,587 + Pf1N1B4_1512 0.65 -1.3
1,745,587 + Pf1N1B4_1512 0.65 +0.3
1,745,587 + Pf1N1B4_1512 0.65 -0.7
1,745,587 + Pf1N1B4_1512 0.65 -0.1
1,745,587 + Pf1N1B4_1512 0.65 +0.9
1,745,588 - Pf1N1B4_1512 0.65 +0.9
1,745,591 + Pf1N1B4_1512 0.66 -0.7
1,745,592 - Pf1N1B4_1512 0.66 -0.7
1,745,592 - Pf1N1B4_1512 0.66 +1.3
1,746,519 + Pf1N1B4_1513 0.11 +1.5
1,746,519 + Pf1N1B4_1513 0.11 +0.9
1,746,519 + Pf1N1B4_1513 0.11 +0.3
1,746,519 + Pf1N1B4_1513 0.11 +1.3
1,746,519 + Pf1N1B4_1513 0.11 +0.3
1,746,519 + Pf1N1B4_1513 0.11 +1.9
1,746,519 + Pf1N1B4_1513 0.11 +1.9
1,746,520 - Pf1N1B4_1513 0.11 +0.3
1,746,520 - Pf1N1B4_1513 0.11 +1.6
1,746,520 - +1.3
1,746,520 - Pf1N1B4_1513 0.11 +1.3
1,746,520 - Pf1N1B4_1513 0.11 -0.1
1,746,520 - Pf1N1B4_1513 0.11 +1.3
1,746,693 - Pf1N1B4_1513 0.26 +1.1
1,746,804 + Pf1N1B4_1513 0.36 -1.0
1,746,804 + Pf1N1B4_1513 0.36 +0.7
1,746,805 - Pf1N1B4_1513 0.36 +0.9
1,746,805 - Pf1N1B4_1513 0.36 +2.6
1,746,805 - Pf1N1B4_1513 0.36 -0.1
1,746,805 - Pf1N1B4_1513 0.36 +0.7
1,746,805 - Pf1N1B4_1513 0.36 +1.5
1,746,805 - Pf1N1B4_1513 0.36 +1.1
1,746,805 - Pf1N1B4_1513 0.36 +1.6
1,746,805 - Pf1N1B4_1513 0.36 -0.7
1,746,805 - Pf1N1B4_1513 0.36 +1.3
1,746,810 + Pf1N1B4_1513 0.36 +1.9
1,746,811 - Pf1N1B4_1513 0.37 +1.3
1,746,930 - Pf1N1B4_1513 0.47 +0.6
1,747,080 + Pf1N1B4_1513 0.60 -0.4
1,747,354 + Pf1N1B4_1513 0.83 -0.3
1,747,431 + Pf1N1B4_1513 0.90 -0.5
1,747,431 + Pf1N1B4_1513 0.90 +1.3
1,747,565 + +0.3
1,747,620 + +0.7
1,747,792 + Pf1N1B4_1514 0.21 -0.8
1,747,793 - Pf1N1B4_1514 0.21 +0.5
1,747,793 - -0.3
1,747,793 - Pf1N1B4_1514 0.21 -1.3
1,747,986 + Pf1N1B4_1514 0.36 -0.7
1,748,328 - Pf1N1B4_1514 0.64 +0.7
1,748,536 - Pf1N1B4_1514 0.80 +0.9

Or see this region's nucleotide sequence