Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_10240

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_10235 and AO353_10240 are separated by 429 nucleotidesAO353_10240 and AO353_10245 overlap by 4 nucleotidesAO353_10245 and AO353_10250 are separated by 3 nucleotides AO353_10235: AO353_10235 - glycosyltransferase, at 2,240,537 to 2,242,102 _10235 AO353_10240: AO353_10240 - NAD-dependent dehydratase, at 2,242,532 to 2,243,446 _10240 AO353_10245: AO353_10245 - GDP-mannose 4,6-dehydratase, at 2,243,443 to 2,244,414 _10245 AO353_10250: AO353_10250 - mannose-1-phosphate guanylyltransferase, at 2,244,418 to 2,245,860 _10250 Position (kb) 2242 2243 2244Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2241.539 kb on + strand, within AO353_10235at 2241.540 kb on - strand, within AO353_10235at 2241.540 kb on - strand, within AO353_10235at 2241.540 kb on - strand, within AO353_10235at 2241.640 kb on + strand, within AO353_10235at 2241.641 kb on - strand, within AO353_10235at 2241.641 kb on - strand, within AO353_10235at 2241.641 kb on - strand, within AO353_10235at 2241.641 kb on - strand, within AO353_10235at 2241.641 kb on - strand, within AO353_10235at 2241.665 kb on + strand, within AO353_10235at 2241.843 kb on - strand, within AO353_10235at 2241.843 kb on - strand, within AO353_10235at 2242.009 kb on - strandat 2242.026 kb on + strandat 2242.026 kb on + strandat 2242.026 kb on + strandat 2242.026 kb on + strandat 2242.026 kb on + strandat 2242.026 kb on + strandat 2242.027 kb on - strandat 2242.027 kb on - strandat 2242.027 kb on - strandat 2242.027 kb on - strandat 2242.027 kb on - strandat 2242.027 kb on - strandat 2242.027 kb on - strandat 2242.027 kb on - strandat 2242.027 kb on - strandat 2242.027 kb on - strandat 2242.027 kb on - strandat 2242.027 kb on - strandat 2242.029 kb on + strandat 2242.029 kb on + strandat 2242.029 kb on + strandat 2242.029 kb on + strandat 2242.030 kb on - strandat 2242.030 kb on - strandat 2242.030 kb on - strandat 2242.030 kb on - strandat 2242.030 kb on - strandat 2242.030 kb on - strandat 2242.030 kb on - strandat 2242.030 kb on - strandat 2242.030 kb on - strandat 2242.030 kb on - strandat 2242.035 kb on + strandat 2242.036 kb on - strandat 2242.036 kb on - strandat 2242.036 kb on - strandat 2242.086 kb on + strandat 2242.087 kb on - strandat 2242.143 kb on + strandat 2242.143 kb on + strandat 2242.143 kb on + strandat 2242.143 kb on + strandat 2242.143 kb on + strandat 2242.143 kb on + strandat 2242.143 kb on + strandat 2242.143 kb on + strandat 2242.143 kb on + strandat 2242.143 kb on + strandat 2242.144 kb on - strandat 2242.144 kb on - strandat 2242.144 kb on - strandat 2242.144 kb on - strandat 2242.144 kb on - strandat 2242.144 kb on - strandat 2242.144 kb on - strandat 2242.144 kb on - strandat 2242.144 kb on - strandat 2242.144 kb on - strandat 2242.172 kb on + strandat 2242.172 kb on + strandat 2242.173 kb on - strandat 2242.209 kb on + strandat 2242.209 kb on + strandat 2242.209 kb on + strandat 2242.209 kb on + strandat 2242.209 kb on + strandat 2242.209 kb on + strandat 2242.209 kb on + strandat 2242.209 kb on + strandat 2242.209 kb on + strandat 2242.210 kb on - strandat 2242.210 kb on - strandat 2242.210 kb on - strandat 2242.210 kb on - strandat 2242.210 kb on - strandat 2242.210 kb on - strandat 2242.210 kb on - strandat 2242.222 kb on + strandat 2242.223 kb on - strandat 2242.223 kb on - strandat 2242.223 kb on - strandat 2242.223 kb on - strandat 2242.290 kb on + strandat 2242.290 kb on + strandat 2242.290 kb on + strandat 2242.291 kb on - strandat 2242.291 kb on - strandat 2242.291 kb on - strandat 2242.291 kb on - strandat 2242.291 kb on - strandat 2242.291 kb on - strandat 2242.291 kb on - strandat 2242.291 kb on - strandat 2242.331 kb on + strandat 2242.331 kb on + strandat 2242.331 kb on + strandat 2242.332 kb on - strandat 2242.332 kb on - strandat 2242.332 kb on - strandat 2242.342 kb on - strandat 2242.342 kb on - strandat 2242.342 kb on - strandat 2242.342 kb on - strandat 2242.342 kb on - strandat 2242.342 kb on - strandat 2242.342 kb on - strandat 2242.376 kb on + strandat 2242.376 kb on + strandat 2242.377 kb on - strandat 2242.421 kb on + strandat 2242.421 kb on + strandat 2242.421 kb on + strandat 2242.421 kb on + strandat 2242.421 kb on + strandat 2242.421 kb on + strandat 2242.422 kb on - strandat 2242.422 kb on - strandat 2242.422 kb on - strandat 2242.422 kb on - strandat 2242.422 kb on - strandat 2242.422 kb on - strandat 2242.439 kb on + strandat 2242.481 kb on - strandat 2242.572 kb on + strandat 2242.573 kb on - strandat 2242.573 kb on - strandat 2242.573 kb on - strandat 2242.573 kb on - strandat 2242.573 kb on - strandat 2242.644 kb on - strand, within AO353_10240at 2242.754 kb on - strand, within AO353_10240at 2242.826 kb on - strand, within AO353_10240at 2242.836 kb on - strand, within AO353_10240at 2242.836 kb on - strand, within AO353_10240at 2242.836 kb on - strand, within AO353_10240at 2242.836 kb on - strand, within AO353_10240at 2242.836 kb on - strand, within AO353_10240at 2242.857 kb on - strand, within AO353_10240at 2242.857 kb on - strand, within AO353_10240at 2242.922 kb on - strand, within AO353_10240at 2242.993 kb on - strand, within AO353_10240at 2242.993 kb on - strand, within AO353_10240at 2243.165 kb on + strand, within AO353_10240at 2243.166 kb on - strand, within AO353_10240at 2243.205 kb on - strand, within AO353_10240at 2243.205 kb on - strand, within AO353_10240at 2243.205 kb on - strand, within AO353_10240at 2243.205 kb on - strand, within AO353_10240at 2243.205 kb on - strand, within AO353_10240at 2243.205 kb on - strand, within AO353_10240at 2243.384 kb on - strandat 2243.384 kb on - strandat 2243.384 kb on - strandat 2243.384 kb on - strandat 2243.384 kb on - strandat 2243.384 kb on - strandat 2243.384 kb on - strandat 2243.491 kb on + strandat 2243.521 kb on + strandat 2243.521 kb on + strandat 2243.521 kb on + strandat 2243.522 kb on - strandat 2243.522 kb on - strandat 2243.522 kb on - strandat 2243.523 kb on + strandat 2243.523 kb on + strandat 2243.523 kb on + strandat 2243.523 kb on + strandat 2243.523 kb on + strandat 2243.523 kb on + strandat 2243.523 kb on + strandat 2243.523 kb on + strandat 2243.524 kb on - strandat 2243.524 kb on - strandat 2243.605 kb on + strand, within AO353_10245at 2243.605 kb on + strand, within AO353_10245at 2243.605 kb on + strand, within AO353_10245at 2243.605 kb on + strand, within AO353_10245at 2243.606 kb on - strand, within AO353_10245at 2243.606 kb on - strand, within AO353_10245at 2243.677 kb on + strand, within AO353_10245at 2243.677 kb on + strand, within AO353_10245at 2243.677 kb on + strand, within AO353_10245at 2243.677 kb on + strand, within AO353_10245at 2243.677 kb on + strand, within AO353_10245at 2243.677 kb on + strand, within AO353_10245at 2243.677 kb on + strand, within AO353_10245at 2243.677 kb on + strand, within AO353_10245at 2243.677 kb on + strand, within AO353_10245at 2243.677 kb on + strand, within AO353_10245at 2243.677 kb on + strand, within AO353_10245at 2243.678 kb on - strand, within AO353_10245at 2243.678 kb on - strand, within AO353_10245at 2243.678 kb on - strand, within AO353_10245at 2243.678 kb on - strand, within AO353_10245at 2243.678 kb on - strand, within AO353_10245at 2243.678 kb on - strand, within AO353_10245at 2243.678 kb on - strand, within AO353_10245at 2243.678 kb on - strand, within AO353_10245at 2243.678 kb on - strand, within AO353_10245at 2243.678 kb on - strand, within AO353_10245at 2243.678 kb on - strand, within AO353_10245at 2243.678 kb on - strand, within AO353_10245at 2243.678 kb on - strand, within AO353_10245at 2243.678 kb on - strand, within AO353_10245at 2243.678 kb on - strand, within AO353_10245at 2243.678 kb on - strand, within AO353_10245at 2243.678 kb on - strand, within AO353_10245at 2243.678 kb on - strand, within AO353_10245at 2243.678 kb on - strand, within AO353_10245at 2243.678 kb on - strand, within AO353_10245at 2243.678 kb on - strand, within AO353_10245at 2243.679 kb on + strand, within AO353_10245at 2243.806 kb on + strand, within AO353_10245at 2243.806 kb on + strand, within AO353_10245at 2243.806 kb on + strand, within AO353_10245at 2243.807 kb on - strand, within AO353_10245at 2243.807 kb on - strand, within AO353_10245at 2243.876 kb on - strand, within AO353_10245at 2243.908 kb on + strand, within AO353_10245at 2243.909 kb on - strand, within AO353_10245at 2243.932 kb on + strand, within AO353_10245at 2243.933 kb on - strand, within AO353_10245at 2243.961 kb on + strand, within AO353_10245at 2244.118 kb on + strand, within AO353_10245at 2244.118 kb on + strand, within AO353_10245at 2244.118 kb on + strand, within AO353_10245at 2244.118 kb on + strand, within AO353_10245at 2244.118 kb on + strand, within AO353_10245at 2244.118 kb on + strand, within AO353_10245at 2244.118 kb on + strand, within AO353_10245at 2244.118 kb on + strand, within AO353_10245at 2244.118 kb on + strand, within AO353_10245at 2244.118 kb on + strand, within AO353_10245at 2244.118 kb on + strand, within AO353_10245at 2244.119 kb on - strand, within AO353_10245at 2244.119 kb on - strand, within AO353_10245at 2244.119 kb on - strand, within AO353_10245at 2244.119 kb on - strand, within AO353_10245at 2244.119 kb on - strand, within AO353_10245at 2244.170 kb on + strand, within AO353_10245at 2244.171 kb on - strand, within AO353_10245at 2244.242 kb on - strand, within AO353_10245at 2244.242 kb on - strand, within AO353_10245at 2244.412 kb on + strandat 2244.412 kb on + strandat 2244.412 kb on + strandat 2244.412 kb on + strandat 2244.412 kb on + strandat 2244.413 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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2,241,539 + AO353_10235 0.64 +0.7
2,241,540 - AO353_10235 0.64 -0.7
2,241,540 - AO353_10235 0.64 +1.6
2,241,540 - AO353_10235 0.64 +1.9
2,241,640 + AO353_10235 0.70 -0.3
2,241,641 - AO353_10235 0.70 +0.3
2,241,641 - AO353_10235 0.70 -2.5
2,241,641 - AO353_10235 0.70 +1.0
2,241,641 - AO353_10235 0.70 -1.8
2,241,641 - AO353_10235 0.70 -0.1
2,241,665 + AO353_10235 0.72 -0.6
2,241,843 - AO353_10235 0.83 -0.2
2,241,843 - AO353_10235 0.83 -0.7
2,242,009 - -0.3
2,242,026 + +0.2
2,242,026 + +0.4
2,242,026 + +0.4
2,242,026 + -0.6
2,242,026 + +1.0
2,242,026 + +1.3
2,242,027 - -0.9
2,242,027 - +0.4
2,242,027 - -0.9
2,242,027 - +0.3
2,242,027 - -0.2
2,242,027 - -1.7
2,242,027 - -1.7
2,242,027 - +0.4
2,242,027 - -2.6
2,242,027 - -0.7
2,242,027 - -0.2
2,242,027 - +2.2
2,242,029 + -0.2
2,242,029 + +0.4
2,242,029 + -0.5
2,242,029 + -0.3
2,242,030 - -0.7
2,242,030 - -1.5
2,242,030 - +0.6
2,242,030 - -0.7
2,242,030 - +3.0
2,242,030 - -1.3
2,242,030 - -0.0
2,242,030 - +1.3
2,242,030 - -1.0
2,242,030 - +0.6
2,242,035 + +0.9
2,242,036 - +0.8
2,242,036 - -0.7
2,242,036 - +0.7
2,242,086 + +0.6
2,242,087 - -0.3
2,242,143 + -0.8
2,242,143 + +0.3
2,242,143 + +0.9
2,242,143 + -0.1
2,242,143 + -0.9
2,242,143 + +0.2
2,242,143 + +0.5
2,242,143 + -0.5
2,242,143 + +0.4
2,242,143 + +0.2
2,242,144 - -0.7
2,242,144 - -0.8
2,242,144 - -0.4
2,242,144 - -1.1
2,242,144 - -0.6
2,242,144 - +0.7
2,242,144 - -0.4
2,242,144 - +1.3
2,242,144 - -1.7
2,242,144 - -0.4
2,242,172 + -1.1
2,242,172 + +1.9
2,242,173 - -1.2
2,242,209 + +1.1
2,242,209 + -0.3
2,242,209 + +0.6
2,242,209 + +0.2
2,242,209 + +1.9
2,242,209 + +0.0
2,242,209 + -1.2
2,242,209 + -0.6
2,242,209 + -0.4
2,242,210 - +0.2
2,242,210 - -1.2
2,242,210 - +0.2
2,242,210 - +0.2
2,242,210 - +0.0
2,242,210 - -1.8
2,242,210 - +1.2
2,242,222 + +1.4
2,242,223 - +0.8
2,242,223 - -1.6
2,242,223 - +0.3
2,242,223 - +0.3
2,242,290 + +1.3
2,242,290 + -0.6
2,242,290 + +0.6
2,242,291 - -0.2
2,242,291 - +1.6
2,242,291 - -0.0
2,242,291 - +0.2
2,242,291 - +1.6
2,242,291 - -1.0
2,242,291 - -0.4
2,242,291 - +0.4
2,242,331 + +1.2
2,242,331 + +0.2
2,242,331 + -0.0
2,242,332 - -1.3
2,242,332 - -0.5
2,242,332 - -0.6
2,242,342 - -0.3
2,242,342 - +0.4
2,242,342 - +2.3
2,242,342 - -1.9
2,242,342 - -0.1
2,242,342 - +0.2
2,242,342 - +0.0
2,242,376 + -0.3
2,242,376 + +1.3
2,242,377 - -0.4
2,242,421 + +0.3
2,242,421 + -0.9
2,242,421 + +0.5
2,242,421 + -0.0
2,242,421 + +0.2
2,242,421 + -0.5
2,242,422 - -0.7
2,242,422 - +1.0
2,242,422 - -3.0
2,242,422 - -1.1
2,242,422 - -0.3
2,242,422 - +0.4
2,242,439 + +0.8
2,242,481 - -1.2
2,242,572 + -0.8
2,242,573 - +0.6
2,242,573 - +0.2
2,242,573 - -0.7
2,242,573 - +0.1
2,242,573 - -1.7
2,242,644 - AO353_10240 0.12 -1.2
2,242,754 - AO353_10240 0.24 -0.5
2,242,826 - AO353_10240 0.32 -1.1
2,242,836 - AO353_10240 0.33 -1.3
2,242,836 - AO353_10240 0.33 -0.5
2,242,836 - AO353_10240 0.33 -1.9
2,242,836 - AO353_10240 0.33 -0.0
2,242,836 - AO353_10240 0.33 -0.5
2,242,857 - AO353_10240 0.36 -0.2
2,242,857 - AO353_10240 0.36 -0.2
2,242,922 - AO353_10240 0.43 -0.4
2,242,993 - AO353_10240 0.50 -1.5
2,242,993 - AO353_10240 0.50 -1.1
2,243,165 + AO353_10240 0.69 +1.9
2,243,166 - AO353_10240 0.69 -1.1
2,243,205 - AO353_10240 0.74 -0.6
2,243,205 - AO353_10240 0.74 +0.6
2,243,205 - AO353_10240 0.74 -0.2
2,243,205 - AO353_10240 0.74 -0.2
2,243,205 - AO353_10240 0.74 -0.4
2,243,205 - AO353_10240 0.74 -0.5
2,243,384 - -1.1
2,243,384 - -1.9
2,243,384 - +0.4
2,243,384 - +0.7
2,243,384 - +1.2
2,243,384 - +0.3
2,243,384 - -2.3
2,243,491 + -0.2
2,243,521 + -0.5
2,243,521 + -1.3
2,243,521 + -0.5
2,243,522 - -0.8
2,243,522 - +0.8
2,243,522 - -0.2
2,243,523 + +1.3
2,243,523 + -0.1
2,243,523 + +0.9
2,243,523 + -0.6
2,243,523 + -0.5
2,243,523 + +2.3
2,243,523 + +0.3
2,243,523 + +0.7
2,243,524 - -2.8
2,243,524 - -1.8
2,243,605 + AO353_10245 0.17 +0.1
2,243,605 + AO353_10245 0.17 -1.5
2,243,605 + AO353_10245 0.17 +0.5
2,243,605 + AO353_10245 0.17 -0.3
2,243,606 - AO353_10245 0.17 +0.8
2,243,606 - AO353_10245 0.17 +3.6
2,243,677 + AO353_10245 0.24 +0.8
2,243,677 + AO353_10245 0.24 +0.1
2,243,677 + AO353_10245 0.24 +0.0
2,243,677 + AO353_10245 0.24 +1.3
2,243,677 + AO353_10245 0.24 +0.2
2,243,677 + AO353_10245 0.24 -0.9
2,243,677 + AO353_10245 0.24 -1.4
2,243,677 + AO353_10245 0.24 -1.5
2,243,677 + AO353_10245 0.24 -0.9
2,243,677 + AO353_10245 0.24 -0.2
2,243,677 + AO353_10245 0.24 +2.0
2,243,678 - AO353_10245 0.24 -0.3
2,243,678 - AO353_10245 0.24 -0.5
2,243,678 - AO353_10245 0.24 +0.6
2,243,678 - AO353_10245 0.24 +0.9
2,243,678 - AO353_10245 0.24 +0.3
2,243,678 - AO353_10245 0.24 +0.9
2,243,678 - AO353_10245 0.24 -1.1
2,243,678 - AO353_10245 0.24 -0.4
2,243,678 - AO353_10245 0.24 +1.8
2,243,678 - AO353_10245 0.24 -1.2
2,243,678 - AO353_10245 0.24 -0.6
2,243,678 - AO353_10245 0.24 +0.0
2,243,678 - AO353_10245 0.24 -0.4
2,243,678 - AO353_10245 0.24 -0.3
2,243,678 - AO353_10245 0.24 +1.0
2,243,678 - AO353_10245 0.24 -0.1
2,243,678 - AO353_10245 0.24 +0.7
2,243,678 - AO353_10245 0.24 +2.2
2,243,678 - AO353_10245 0.24 +0.3
2,243,678 - AO353_10245 0.24 +0.6
2,243,678 - AO353_10245 0.24 -1.1
2,243,679 + AO353_10245 0.24 +0.2
2,243,806 + AO353_10245 0.37 -0.4
2,243,806 + AO353_10245 0.37 -1.1
2,243,806 + AO353_10245 0.37 +0.9
2,243,807 - AO353_10245 0.37 +0.3
2,243,807 - AO353_10245 0.37 +0.2
2,243,876 - AO353_10245 0.45 -0.9
2,243,908 + AO353_10245 0.48 -0.5
2,243,909 - AO353_10245 0.48 -0.5
2,243,932 + AO353_10245 0.50 -0.2
2,243,933 - AO353_10245 0.50 +1.2
2,243,961 + AO353_10245 0.53 +0.9
2,244,118 + AO353_10245 0.69 -0.5
2,244,118 + AO353_10245 0.69 -0.8
2,244,118 + AO353_10245 0.69 -1.7
2,244,118 + AO353_10245 0.69 +0.2
2,244,118 + AO353_10245 0.69 +0.7
2,244,118 + AO353_10245 0.69 -0.0
2,244,118 + AO353_10245 0.69 +0.2
2,244,118 + AO353_10245 0.69 +1.2
2,244,118 + AO353_10245 0.69 +1.2
2,244,118 + AO353_10245 0.69 -1.0
2,244,118 + AO353_10245 0.69 -0.9
2,244,119 - AO353_10245 0.70 +0.1
2,244,119 - AO353_10245 0.70 -0.8
2,244,119 - AO353_10245 0.70 -0.4
2,244,119 - AO353_10245 0.70 +1.1
2,244,119 - AO353_10245 0.70 +0.2
2,244,170 + AO353_10245 0.75 +0.5
2,244,171 - AO353_10245 0.75 -0.2
2,244,242 - AO353_10245 0.82 -0.3
2,244,242 - AO353_10245 0.82 -0.1
2,244,412 + -0.9
2,244,412 + -0.2
2,244,412 + +0.2
2,244,412 + -1.3
2,244,412 + +1.4
2,244,413 - -1.1

Or see this region's nucleotide sequence