Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_10235 and AO353_10240 are separated by 429 nucleotides AO353_10240 and AO353_10245 overlap by 4 nucleotides AO353_10245 and AO353_10250 are separated by 3 nucleotides
AO353_10235: AO353_10235 - glycosyltransferase, at 2,240,537 to 2,242,102
_10235
AO353_10240: AO353_10240 - NAD-dependent dehydratase, at 2,242,532 to 2,243,446
_10240
AO353_10245: AO353_10245 - GDP-mannose 4,6-dehydratase, at 2,243,443 to 2,244,414
_10245
AO353_10250: AO353_10250 - mannose-1-phosphate guanylyltransferase, at 2,244,418 to 2,245,860
_10250
Position (kb)
2242
2243
2244 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2241.539 kb on + strand, within AO353_10235 at 2241.540 kb on - strand, within AO353_10235 at 2241.540 kb on - strand, within AO353_10235 at 2241.540 kb on - strand, within AO353_10235 at 2241.640 kb on + strand, within AO353_10235 at 2241.641 kb on - strand, within AO353_10235 at 2241.641 kb on - strand, within AO353_10235 at 2241.641 kb on - strand, within AO353_10235 at 2241.641 kb on - strand, within AO353_10235 at 2241.641 kb on - strand, within AO353_10235 at 2241.665 kb on + strand, within AO353_10235 at 2241.843 kb on - strand, within AO353_10235 at 2241.843 kb on - strand, within AO353_10235 at 2242.009 kb on - strand at 2242.026 kb on + strand at 2242.026 kb on + strand at 2242.026 kb on + strand at 2242.026 kb on + strand at 2242.026 kb on + strand at 2242.026 kb on + strand at 2242.027 kb on - strand at 2242.027 kb on - strand at 2242.027 kb on - strand at 2242.027 kb on - strand at 2242.027 kb on - strand at 2242.027 kb on - strand at 2242.027 kb on - strand at 2242.027 kb on - strand at 2242.027 kb on - strand at 2242.027 kb on - strand at 2242.027 kb on - strand at 2242.027 kb on - strand at 2242.029 kb on + strand at 2242.029 kb on + strand at 2242.029 kb on + strand at 2242.029 kb on + strand at 2242.030 kb on - strand at 2242.030 kb on - strand at 2242.030 kb on - strand at 2242.030 kb on - strand at 2242.030 kb on - strand at 2242.030 kb on - strand at 2242.030 kb on - strand at 2242.030 kb on - strand at 2242.030 kb on - strand at 2242.030 kb on - strand at 2242.035 kb on + strand at 2242.036 kb on - strand at 2242.036 kb on - strand at 2242.036 kb on - strand at 2242.086 kb on + strand at 2242.087 kb on - strand at 2242.143 kb on + strand at 2242.143 kb on + strand at 2242.143 kb on + strand at 2242.143 kb on + strand at 2242.143 kb on + strand at 2242.143 kb on + strand at 2242.143 kb on + strand at 2242.143 kb on + strand at 2242.143 kb on + strand at 2242.143 kb on + strand at 2242.144 kb on - strand at 2242.144 kb on - strand at 2242.144 kb on - strand at 2242.144 kb on - strand at 2242.144 kb on - strand at 2242.144 kb on - strand at 2242.144 kb on - strand at 2242.144 kb on - strand at 2242.144 kb on - strand at 2242.144 kb on - strand at 2242.172 kb on + strand at 2242.172 kb on + strand at 2242.173 kb on - strand at 2242.209 kb on + strand at 2242.209 kb on + strand at 2242.209 kb on + strand at 2242.209 kb on + strand at 2242.209 kb on + strand at 2242.209 kb on + strand at 2242.209 kb on + strand at 2242.209 kb on + strand at 2242.209 kb on + strand at 2242.210 kb on - strand at 2242.210 kb on - strand at 2242.210 kb on - strand at 2242.210 kb on - strand at 2242.210 kb on - strand at 2242.210 kb on - strand at 2242.210 kb on - strand at 2242.222 kb on + strand at 2242.223 kb on - strand at 2242.223 kb on - strand at 2242.223 kb on - strand at 2242.223 kb on - strand at 2242.290 kb on + strand at 2242.290 kb on + strand at 2242.290 kb on + strand at 2242.291 kb on - strand at 2242.291 kb on - strand at 2242.291 kb on - strand at 2242.291 kb on - strand at 2242.291 kb on - strand at 2242.291 kb on - strand at 2242.291 kb on - strand at 2242.291 kb on - strand at 2242.331 kb on + strand at 2242.331 kb on + strand at 2242.331 kb on + strand at 2242.332 kb on - strand at 2242.332 kb on - strand at 2242.332 kb on - strand at 2242.342 kb on - strand at 2242.342 kb on - strand at 2242.342 kb on - strand at 2242.342 kb on - strand at 2242.342 kb on - strand at 2242.342 kb on - strand at 2242.342 kb on - strand at 2242.376 kb on + strand at 2242.376 kb on + strand at 2242.377 kb on - strand at 2242.421 kb on + strand at 2242.421 kb on + strand at 2242.421 kb on + strand at 2242.421 kb on + strand at 2242.421 kb on + strand at 2242.421 kb on + strand at 2242.422 kb on - strand at 2242.422 kb on - strand at 2242.422 kb on - strand at 2242.422 kb on - strand at 2242.422 kb on - strand at 2242.422 kb on - strand at 2242.439 kb on + strand at 2242.481 kb on - strand at 2242.572 kb on + strand at 2242.573 kb on - strand at 2242.573 kb on - strand at 2242.573 kb on - strand at 2242.573 kb on - strand at 2242.573 kb on - strand at 2242.644 kb on - strand, within AO353_10240 at 2242.754 kb on - strand, within AO353_10240 at 2242.826 kb on - strand, within AO353_10240 at 2242.836 kb on - strand, within AO353_10240 at 2242.836 kb on - strand, within AO353_10240 at 2242.836 kb on - strand, within AO353_10240 at 2242.836 kb on - strand, within AO353_10240 at 2242.836 kb on - strand, within AO353_10240 at 2242.857 kb on - strand, within AO353_10240 at 2242.857 kb on - strand, within AO353_10240 at 2242.922 kb on - strand, within AO353_10240 at 2242.993 kb on - strand, within AO353_10240 at 2242.993 kb on - strand, within AO353_10240 at 2243.165 kb on + strand, within AO353_10240 at 2243.166 kb on - strand, within AO353_10240 at 2243.205 kb on - strand, within AO353_10240 at 2243.205 kb on - strand, within AO353_10240 at 2243.205 kb on - strand, within AO353_10240 at 2243.205 kb on - strand, within AO353_10240 at 2243.205 kb on - strand, within AO353_10240 at 2243.205 kb on - strand, within AO353_10240 at 2243.384 kb on - strand at 2243.384 kb on - strand at 2243.384 kb on - strand at 2243.384 kb on - strand at 2243.384 kb on - strand at 2243.384 kb on - strand at 2243.384 kb on - strand at 2243.491 kb on + strand at 2243.521 kb on + strand at 2243.521 kb on + strand at 2243.521 kb on + strand at 2243.522 kb on - strand at 2243.522 kb on - strand at 2243.522 kb on - strand at 2243.523 kb on + strand at 2243.523 kb on + strand at 2243.523 kb on + strand at 2243.523 kb on + strand at 2243.523 kb on + strand at 2243.523 kb on + strand at 2243.523 kb on + strand at 2243.523 kb on + strand at 2243.524 kb on - strand at 2243.524 kb on - strand at 2243.605 kb on + strand, within AO353_10245 at 2243.605 kb on + strand, within AO353_10245 at 2243.605 kb on + strand, within AO353_10245 at 2243.605 kb on + strand, within AO353_10245 at 2243.606 kb on - strand, within AO353_10245 at 2243.606 kb on - strand, within AO353_10245 at 2243.677 kb on + strand, within AO353_10245 at 2243.677 kb on + strand, within AO353_10245 at 2243.677 kb on + strand, within AO353_10245 at 2243.677 kb on + strand, within AO353_10245 at 2243.677 kb on + strand, within AO353_10245 at 2243.677 kb on + strand, within AO353_10245 at 2243.677 kb on + strand, within AO353_10245 at 2243.677 kb on + strand, within AO353_10245 at 2243.677 kb on + strand, within AO353_10245 at 2243.677 kb on + strand, within AO353_10245 at 2243.677 kb on + strand, within AO353_10245 at 2243.678 kb on - strand, within AO353_10245 at 2243.678 kb on - strand, within AO353_10245 at 2243.678 kb on - strand, within AO353_10245 at 2243.678 kb on - strand, within AO353_10245 at 2243.678 kb on - strand, within AO353_10245 at 2243.678 kb on - strand, within AO353_10245 at 2243.678 kb on - strand, within AO353_10245 at 2243.678 kb on - strand, within AO353_10245 at 2243.678 kb on - strand, within AO353_10245 at 2243.678 kb on - strand, within AO353_10245 at 2243.678 kb on - strand, within AO353_10245 at 2243.678 kb on - strand, within AO353_10245 at 2243.678 kb on - strand, within AO353_10245 at 2243.678 kb on - strand, within AO353_10245 at 2243.678 kb on - strand, within AO353_10245 at 2243.678 kb on - strand, within AO353_10245 at 2243.678 kb on - strand, within AO353_10245 at 2243.678 kb on - strand, within AO353_10245 at 2243.678 kb on - strand, within AO353_10245 at 2243.678 kb on - strand, within AO353_10245 at 2243.678 kb on - strand, within AO353_10245 at 2243.679 kb on + strand, within AO353_10245 at 2243.806 kb on + strand, within AO353_10245 at 2243.806 kb on + strand, within AO353_10245 at 2243.806 kb on + strand, within AO353_10245 at 2243.807 kb on - strand, within AO353_10245 at 2243.807 kb on - strand, within AO353_10245 at 2243.876 kb on - strand, within AO353_10245 at 2243.908 kb on + strand, within AO353_10245 at 2243.909 kb on - strand, within AO353_10245 at 2243.932 kb on + strand, within AO353_10245 at 2243.933 kb on - strand, within AO353_10245 at 2243.961 kb on + strand, within AO353_10245 at 2244.118 kb on + strand, within AO353_10245 at 2244.118 kb on + strand, within AO353_10245 at 2244.118 kb on + strand, within AO353_10245 at 2244.118 kb on + strand, within AO353_10245 at 2244.118 kb on + strand, within AO353_10245 at 2244.118 kb on + strand, within AO353_10245 at 2244.118 kb on + strand, within AO353_10245 at 2244.118 kb on + strand, within AO353_10245 at 2244.118 kb on + strand, within AO353_10245 at 2244.118 kb on + strand, within AO353_10245 at 2244.118 kb on + strand, within AO353_10245 at 2244.119 kb on - strand, within AO353_10245 at 2244.119 kb on - strand, within AO353_10245 at 2244.119 kb on - strand, within AO353_10245 at 2244.119 kb on - strand, within AO353_10245 at 2244.119 kb on - strand, within AO353_10245 at 2244.170 kb on + strand, within AO353_10245 at 2244.171 kb on - strand, within AO353_10245 at 2244.242 kb on - strand, within AO353_10245 at 2244.242 kb on - strand, within AO353_10245 at 2244.412 kb on + strand at 2244.412 kb on + strand at 2244.412 kb on + strand at 2244.412 kb on + strand at 2244.412 kb on + strand at 2244.413 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 2,241,539 + AO353_10235 0.64 +0.7 2,241,540 - AO353_10235 0.64 -0.7 2,241,540 - AO353_10235 0.64 +1.6 2,241,540 - AO353_10235 0.64 +1.9 2,241,640 + AO353_10235 0.70 -0.3 2,241,641 - AO353_10235 0.70 +0.3 2,241,641 - AO353_10235 0.70 -2.5 2,241,641 - AO353_10235 0.70 +1.0 2,241,641 - AO353_10235 0.70 -1.8 2,241,641 - AO353_10235 0.70 -0.1 2,241,665 + AO353_10235 0.72 -0.6 2,241,843 - AO353_10235 0.83 -0.2 2,241,843 - AO353_10235 0.83 -0.7 2,242,009 - -0.3 2,242,026 + +0.2 2,242,026 + +0.4 2,242,026 + +0.4 2,242,026 + -0.6 2,242,026 + +1.0 2,242,026 + +1.3 2,242,027 - -0.9 2,242,027 - +0.4 2,242,027 - -0.9 2,242,027 - +0.3 2,242,027 - -0.2 2,242,027 - -1.7 2,242,027 - -1.7 2,242,027 - +0.4 2,242,027 - -2.6 2,242,027 - -0.7 2,242,027 - -0.2 2,242,027 - +2.2 2,242,029 + -0.2 2,242,029 + +0.4 2,242,029 + -0.5 2,242,029 + -0.3 2,242,030 - -0.7 2,242,030 - -1.5 2,242,030 - +0.6 2,242,030 - -0.7 2,242,030 - +3.0 2,242,030 - -1.3 2,242,030 - -0.0 2,242,030 - +1.3 2,242,030 - -1.0 2,242,030 - +0.6 2,242,035 + +0.9 2,242,036 - +0.8 2,242,036 - -0.7 2,242,036 - +0.7 2,242,086 + +0.6 2,242,087 - -0.3 2,242,143 + -0.8 2,242,143 + +0.3 2,242,143 + +0.9 2,242,143 + -0.1 2,242,143 + -0.9 2,242,143 + +0.2 2,242,143 + +0.5 2,242,143 + -0.5 2,242,143 + +0.4 2,242,143 + +0.2 2,242,144 - -0.7 2,242,144 - -0.8 2,242,144 - -0.4 2,242,144 - -1.1 2,242,144 - -0.6 2,242,144 - +0.7 2,242,144 - -0.4 2,242,144 - +1.3 2,242,144 - -1.7 2,242,144 - -0.4 2,242,172 + -1.1 2,242,172 + +1.9 2,242,173 - -1.2 2,242,209 + +1.1 2,242,209 + -0.3 2,242,209 + +0.6 2,242,209 + +0.2 2,242,209 + +1.9 2,242,209 + +0.0 2,242,209 + -1.2 2,242,209 + -0.6 2,242,209 + -0.4 2,242,210 - +0.2 2,242,210 - -1.2 2,242,210 - +0.2 2,242,210 - +0.2 2,242,210 - +0.0 2,242,210 - -1.8 2,242,210 - +1.2 2,242,222 + +1.4 2,242,223 - +0.8 2,242,223 - -1.6 2,242,223 - +0.3 2,242,223 - +0.3 2,242,290 + +1.3 2,242,290 + -0.6 2,242,290 + +0.6 2,242,291 - -0.2 2,242,291 - +1.6 2,242,291 - -0.0 2,242,291 - +0.2 2,242,291 - +1.6 2,242,291 - -1.0 2,242,291 - -0.4 2,242,291 - +0.4 2,242,331 + +1.2 2,242,331 + +0.2 2,242,331 + -0.0 2,242,332 - -1.3 2,242,332 - -0.5 2,242,332 - -0.6 2,242,342 - -0.3 2,242,342 - +0.4 2,242,342 - +2.3 2,242,342 - -1.9 2,242,342 - -0.1 2,242,342 - +0.2 2,242,342 - +0.0 2,242,376 + -0.3 2,242,376 + +1.3 2,242,377 - -0.4 2,242,421 + +0.3 2,242,421 + -0.9 2,242,421 + +0.5 2,242,421 + -0.0 2,242,421 + +0.2 2,242,421 + -0.5 2,242,422 - -0.7 2,242,422 - +1.0 2,242,422 - -3.0 2,242,422 - -1.1 2,242,422 - -0.3 2,242,422 - +0.4 2,242,439 + +0.8 2,242,481 - -1.2 2,242,572 + -0.8 2,242,573 - +0.6 2,242,573 - +0.2 2,242,573 - -0.7 2,242,573 - +0.1 2,242,573 - -1.7 2,242,644 - AO353_10240 0.12 -1.2 2,242,754 - AO353_10240 0.24 -0.5 2,242,826 - AO353_10240 0.32 -1.1 2,242,836 - AO353_10240 0.33 -1.3 2,242,836 - AO353_10240 0.33 -0.5 2,242,836 - AO353_10240 0.33 -1.9 2,242,836 - AO353_10240 0.33 -0.0 2,242,836 - AO353_10240 0.33 -0.5 2,242,857 - AO353_10240 0.36 -0.2 2,242,857 - AO353_10240 0.36 -0.2 2,242,922 - AO353_10240 0.43 -0.4 2,242,993 - AO353_10240 0.50 -1.5 2,242,993 - AO353_10240 0.50 -1.1 2,243,165 + AO353_10240 0.69 +1.9 2,243,166 - AO353_10240 0.69 -1.1 2,243,205 - AO353_10240 0.74 -0.6 2,243,205 - AO353_10240 0.74 +0.6 2,243,205 - AO353_10240 0.74 -0.2 2,243,205 - AO353_10240 0.74 -0.2 2,243,205 - AO353_10240 0.74 -0.4 2,243,205 - AO353_10240 0.74 -0.5 2,243,384 - -1.1 2,243,384 - -1.9 2,243,384 - +0.4 2,243,384 - +0.7 2,243,384 - +1.2 2,243,384 - +0.3 2,243,384 - -2.3 2,243,491 + -0.2 2,243,521 + -0.5 2,243,521 + -1.3 2,243,521 + -0.5 2,243,522 - -0.8 2,243,522 - +0.8 2,243,522 - -0.2 2,243,523 + +1.3 2,243,523 + -0.1 2,243,523 + +0.9 2,243,523 + -0.6 2,243,523 + -0.5 2,243,523 + +2.3 2,243,523 + +0.3 2,243,523 + +0.7 2,243,524 - -2.8 2,243,524 - -1.8 2,243,605 + AO353_10245 0.17 +0.1 2,243,605 + AO353_10245 0.17 -1.5 2,243,605 + AO353_10245 0.17 +0.5 2,243,605 + AO353_10245 0.17 -0.3 2,243,606 - AO353_10245 0.17 +0.8 2,243,606 - AO353_10245 0.17 +3.6 2,243,677 + AO353_10245 0.24 +0.8 2,243,677 + AO353_10245 0.24 +0.1 2,243,677 + AO353_10245 0.24 +0.0 2,243,677 + AO353_10245 0.24 +1.3 2,243,677 + AO353_10245 0.24 +0.2 2,243,677 + AO353_10245 0.24 -0.9 2,243,677 + AO353_10245 0.24 -1.4 2,243,677 + AO353_10245 0.24 -1.5 2,243,677 + AO353_10245 0.24 -0.9 2,243,677 + AO353_10245 0.24 -0.2 2,243,677 + AO353_10245 0.24 +2.0 2,243,678 - AO353_10245 0.24 -0.3 2,243,678 - AO353_10245 0.24 -0.5 2,243,678 - AO353_10245 0.24 +0.6 2,243,678 - AO353_10245 0.24 +0.9 2,243,678 - AO353_10245 0.24 +0.3 2,243,678 - AO353_10245 0.24 +0.9 2,243,678 - AO353_10245 0.24 -1.1 2,243,678 - AO353_10245 0.24 -0.4 2,243,678 - AO353_10245 0.24 +1.8 2,243,678 - AO353_10245 0.24 -1.2 2,243,678 - AO353_10245 0.24 -0.6 2,243,678 - AO353_10245 0.24 +0.0 2,243,678 - AO353_10245 0.24 -0.4 2,243,678 - AO353_10245 0.24 -0.3 2,243,678 - AO353_10245 0.24 +1.0 2,243,678 - AO353_10245 0.24 -0.1 2,243,678 - AO353_10245 0.24 +0.7 2,243,678 - AO353_10245 0.24 +2.2 2,243,678 - AO353_10245 0.24 +0.3 2,243,678 - AO353_10245 0.24 +0.6 2,243,678 - AO353_10245 0.24 -1.1 2,243,679 + AO353_10245 0.24 +0.2 2,243,806 + AO353_10245 0.37 -0.4 2,243,806 + AO353_10245 0.37 -1.1 2,243,806 + AO353_10245 0.37 +0.9 2,243,807 - AO353_10245 0.37 +0.3 2,243,807 - AO353_10245 0.37 +0.2 2,243,876 - AO353_10245 0.45 -0.9 2,243,908 + AO353_10245 0.48 -0.5 2,243,909 - AO353_10245 0.48 -0.5 2,243,932 + AO353_10245 0.50 -0.2 2,243,933 - AO353_10245 0.50 +1.2 2,243,961 + AO353_10245 0.53 +0.9 2,244,118 + AO353_10245 0.69 -0.5 2,244,118 + AO353_10245 0.69 -0.8 2,244,118 + AO353_10245 0.69 -1.7 2,244,118 + AO353_10245 0.69 +0.2 2,244,118 + AO353_10245 0.69 +0.7 2,244,118 + AO353_10245 0.69 -0.0 2,244,118 + AO353_10245 0.69 +0.2 2,244,118 + AO353_10245 0.69 +1.2 2,244,118 + AO353_10245 0.69 +1.2 2,244,118 + AO353_10245 0.69 -1.0 2,244,118 + AO353_10245 0.69 -0.9 2,244,119 - AO353_10245 0.70 +0.1 2,244,119 - AO353_10245 0.70 -0.8 2,244,119 - AO353_10245 0.70 -0.4 2,244,119 - AO353_10245 0.70 +1.1 2,244,119 - AO353_10245 0.70 +0.2 2,244,170 + AO353_10245 0.75 +0.5 2,244,171 - AO353_10245 0.75 -0.2 2,244,242 - AO353_10245 0.82 -0.3 2,244,242 - AO353_10245 0.82 -0.1 2,244,412 + -0.9 2,244,412 + -0.2 2,244,412 + +0.2 2,244,412 + -1.3 2,244,412 + +1.4 2,244,413 - -1.1
Or see this region's nucleotide sequence