Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20350

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_20345 and AO353_20350 are separated by 11 nucleotidesAO353_20350 and AO353_20355 are separated by 251 nucleotides AO353_20345: AO353_20345 - methylcrotonoyl-CoA carboxylase, at 4,471,531 to 4,473,138 _20345 AO353_20350: AO353_20350 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data), at 4,473,150 to 4,474,313 _20350 AO353_20355: AO353_20355 - AMP-binding protein, at 4,474,565 to 4,476,262 _20355 Position (kb) 4473 4474 4475Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4472.158 kb on + strand, within AO353_20345at 4472.159 kb on - strand, within AO353_20345at 4472.159 kb on - strand, within AO353_20345at 4472.270 kb on + strand, within AO353_20345at 4472.270 kb on + strand, within AO353_20345at 4472.270 kb on + strand, within AO353_20345at 4472.270 kb on + strand, within AO353_20345at 4472.271 kb on - strand, within AO353_20345at 4472.271 kb on - strand, within AO353_20345at 4472.289 kb on - strand, within AO353_20345at 4472.308 kb on - strand, within AO353_20345at 4472.308 kb on - strand, within AO353_20345at 4472.397 kb on - strand, within AO353_20345at 4472.559 kb on - strand, within AO353_20345at 4472.559 kb on - strand, within AO353_20345at 4472.559 kb on - strand, within AO353_20345at 4472.717 kb on + strand, within AO353_20345at 4472.717 kb on + strand, within AO353_20345at 4472.717 kb on + strand, within AO353_20345at 4472.718 kb on - strand, within AO353_20345at 4472.718 kb on - strand, within AO353_20345at 4472.789 kb on + strand, within AO353_20345at 4472.789 kb on + strand, within AO353_20345at 4472.789 kb on + strand, within AO353_20345at 4472.789 kb on + strand, within AO353_20345at 4472.790 kb on - strand, within AO353_20345at 4472.790 kb on - strand, within AO353_20345at 4472.894 kb on + strand, within AO353_20345at 4472.895 kb on - strand, within AO353_20345at 4472.994 kb on + strandat 4473.223 kb on + strandat 4473.223 kb on + strandat 4473.224 kb on - strandat 4473.271 kb on + strand, within AO353_20350at 4473.272 kb on - strand, within AO353_20350at 4473.272 kb on - strand, within AO353_20350at 4473.272 kb on - strand, within AO353_20350at 4473.272 kb on - strandat 4473.334 kb on + strand, within AO353_20350at 4473.343 kb on - strand, within AO353_20350at 4473.400 kb on + strand, within AO353_20350at 4473.400 kb on + strand, within AO353_20350at 4473.433 kb on + strand, within AO353_20350at 4473.433 kb on + strand, within AO353_20350at 4473.433 kb on + strand, within AO353_20350at 4473.433 kb on + strand, within AO353_20350at 4473.433 kb on + strand, within AO353_20350at 4473.433 kb on + strand, within AO353_20350at 4473.433 kb on + strand, within AO353_20350at 4473.433 kb on + strand, within AO353_20350at 4473.433 kb on + strand, within AO353_20350at 4473.433 kb on + strand, within AO353_20350at 4473.433 kb on + strand, within AO353_20350at 4473.434 kb on - strand, within AO353_20350at 4473.434 kb on - strand, within AO353_20350at 4473.434 kb on - strand, within AO353_20350at 4473.434 kb on - strand, within AO353_20350at 4473.434 kb on - strand, within AO353_20350at 4473.508 kb on + strand, within AO353_20350at 4473.508 kb on + strand, within AO353_20350at 4473.509 kb on - strand, within AO353_20350at 4473.509 kb on - strand, within AO353_20350at 4473.509 kb on - strand, within AO353_20350at 4473.577 kb on + strand, within AO353_20350at 4473.578 kb on - strand, within AO353_20350at 4473.793 kb on + strand, within AO353_20350at 4473.793 kb on + strand, within AO353_20350at 4473.794 kb on - strand, within AO353_20350at 4473.802 kb on + strand, within AO353_20350at 4473.802 kb on + strand, within AO353_20350at 4473.802 kb on + strand, within AO353_20350at 4473.802 kb on + strand, within AO353_20350at 4473.802 kb on + strand, within AO353_20350at 4473.802 kb on + strand, within AO353_20350at 4473.802 kb on + strand, within AO353_20350at 4473.802 kb on + strand, within AO353_20350at 4473.802 kb on + strand, within AO353_20350at 4473.803 kb on - strand, within AO353_20350at 4473.803 kb on - strand, within AO353_20350at 4473.803 kb on - strand, within AO353_20350at 4473.803 kb on - strand, within AO353_20350at 4473.803 kb on - strand, within AO353_20350at 4473.803 kb on - strand, within AO353_20350at 4473.803 kb on - strand, within AO353_20350at 4473.856 kb on + strand, within AO353_20350at 4473.856 kb on + strand, within AO353_20350at 4473.856 kb on + strand, within AO353_20350at 4473.856 kb on + strand, within AO353_20350at 4473.856 kb on + strand, within AO353_20350at 4473.856 kb on + strand, within AO353_20350at 4473.857 kb on - strand, within AO353_20350at 4473.857 kb on - strand, within AO353_20350at 4473.857 kb on - strand, within AO353_20350at 4473.857 kb on - strand, within AO353_20350at 4473.970 kb on + strand, within AO353_20350at 4473.970 kb on + strand, within AO353_20350at 4473.970 kb on + strand, within AO353_20350at 4473.971 kb on - strand, within AO353_20350at 4473.971 kb on - strand, within AO353_20350at 4474.102 kb on + strand, within AO353_20350at 4474.103 kb on - strand, within AO353_20350at 4474.123 kb on + strand, within AO353_20350at 4474.140 kb on - strandat 4474.337 kb on - strandat 4474.337 kb on - strandat 4474.337 kb on - strandat 4474.337 kb on - strandat 4474.337 kb on - strandat 4474.339 kb on - strandat 4474.360 kb on - strandat 4474.396 kb on - strandat 4474.457 kb on - strandat 4474.527 kb on + strandat 4474.527 kb on + strandat 4474.528 kb on - strandat 4474.540 kb on + strandat 4474.541 kb on - strandat 4474.545 kb on + strandat 4474.546 kb on - strandat 4474.546 kb on - strandat 4474.554 kb on + strandat 4474.598 kb on + strandat 4474.598 kb on + strandat 4474.598 kb on + strandat 4474.598 kb on + strandat 4474.598 kb on + strandat 4474.598 kb on + strandat 4474.598 kb on + strandat 4474.598 kb on + strandat 4474.598 kb on + strandat 4474.598 kb on + strandat 4474.599 kb on - strandat 4474.599 kb on - strandat 4474.658 kb on - strandat 4474.658 kb on - strandat 4474.673 kb on + strandat 4474.673 kb on + strandat 4474.673 kb on + strandat 4474.674 kb on - strandat 4474.674 kb on - strandat 4474.674 kb on - strandat 4474.913 kb on + strand, within AO353_20355at 4474.914 kb on - strand, within AO353_20355at 4474.977 kb on - strand, within AO353_20355at 4475.204 kb on + strand, within AO353_20355at 4475.204 kb on + strand, within AO353_20355at 4475.204 kb on + strand, within AO353_20355at 4475.204 kb on + strand, within AO353_20355at 4475.204 kb on + strand, within AO353_20355at 4475.205 kb on - strand, within AO353_20355at 4475.205 kb on - strand, within AO353_20355at 4475.205 kb on - strand, within AO353_20355at 4475.205 kb on - strand, within AO353_20355at 4475.205 kb on - strand, within AO353_20355at 4475.205 kb on - strand, within AO353_20355at 4475.205 kb on - strand, within AO353_20355at 4475.205 kb on - strand, within AO353_20355at 4475.205 kb on - strand, within AO353_20355at 4475.205 kb on - strand, within AO353_20355at 4475.252 kb on + strand, within AO353_20355at 4475.252 kb on + strand, within AO353_20355at 4475.253 kb on - strand, within AO353_20355at 4475.253 kb on - strand, within AO353_20355at 4475.253 kb on - strand, within AO353_20355at 4475.253 kb on - strand, within AO353_20355at 4475.253 kb on - strand, within AO353_20355at 4475.253 kb on - strand, within AO353_20355at 4475.273 kb on + strand, within AO353_20355at 4475.273 kb on + strand, within AO353_20355at 4475.273 kb on + strand, within AO353_20355at 4475.273 kb on + strand, within AO353_20355at 4475.273 kb on + strand, within AO353_20355at 4475.274 kb on - strand, within AO353_20355at 4475.274 kb on - strand, within AO353_20355at 4475.274 kb on - strand, within AO353_20355at 4475.274 kb on - strand, within AO353_20355at 4475.274 kb on - strand, within AO353_20355at 4475.274 kb on - strand, within AO353_20355at 4475.274 kb on - strand, within AO353_20355at 4475.274 kb on - strand, within AO353_20355at 4475.274 kb on - strand, within AO353_20355

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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4,472,158 + AO353_20345 0.39 -2.8
4,472,159 - AO353_20345 0.39 -0.1
4,472,159 - AO353_20345 0.39 +0.4
4,472,270 + AO353_20345 0.46 +0.1
4,472,270 + AO353_20345 0.46 +1.7
4,472,270 + AO353_20345 0.46 +0.4
4,472,270 + AO353_20345 0.46 -1.4
4,472,271 - AO353_20345 0.46 -0.5
4,472,271 - AO353_20345 0.46 -1.3
4,472,289 - AO353_20345 0.47 -0.3
4,472,308 - AO353_20345 0.48 -1.5
4,472,308 - AO353_20345 0.48 -2.8
4,472,397 - AO353_20345 0.54 -0.8
4,472,559 - AO353_20345 0.64 +0.1
4,472,559 - AO353_20345 0.64 -1.5
4,472,559 - AO353_20345 0.64 +0.1
4,472,717 + AO353_20345 0.74 -1.9
4,472,717 + AO353_20345 0.74 -0.9
4,472,717 + AO353_20345 0.74 +0.4
4,472,718 - AO353_20345 0.74 -0.5
4,472,718 - AO353_20345 0.74 -1.3
4,472,789 + AO353_20345 0.78 -1.8
4,472,789 + AO353_20345 0.78 -0.5
4,472,789 + AO353_20345 0.78 -0.6
4,472,789 + AO353_20345 0.78 -0.5
4,472,790 - AO353_20345 0.78 -0.5
4,472,790 - AO353_20345 0.78 -2.1
4,472,894 + AO353_20345 0.85 -1.5
4,472,895 - AO353_20345 0.85 -1.5
4,472,994 + -2.7
4,473,223 + -0.3
4,473,223 + -1.0
4,473,224 - -0.1
4,473,271 + AO353_20350 0.10 -0.0
4,473,272 - AO353_20350 0.10 -1.3
4,473,272 - AO353_20350 0.10 -1.3
4,473,272 - AO353_20350 0.10 +0.4
4,473,272 - +0.4
4,473,334 + AO353_20350 0.16 +0.1
4,473,343 - AO353_20350 0.17 -0.1
4,473,400 + AO353_20350 0.21 -2.2
4,473,400 + AO353_20350 0.21 +1.7
4,473,433 + AO353_20350 0.24 +0.7
4,473,433 + AO353_20350 0.24 -1.8
4,473,433 + AO353_20350 0.24 -2.3
4,473,433 + AO353_20350 0.24 -0.8
4,473,433 + AO353_20350 0.24 -0.5
4,473,433 + AO353_20350 0.24 -2.2
4,473,433 + AO353_20350 0.24 -0.5
4,473,433 + AO353_20350 0.24 -1.4
4,473,433 + AO353_20350 0.24 -0.6
4,473,433 + AO353_20350 0.24 -0.3
4,473,433 + AO353_20350 0.24 -1.0
4,473,434 - AO353_20350 0.24 +3.3
4,473,434 - AO353_20350 0.24 -0.2
4,473,434 - AO353_20350 0.24 -0.8
4,473,434 - AO353_20350 0.24 -1.7
4,473,434 - AO353_20350 0.24 -0.5
4,473,508 + AO353_20350 0.31 +1.4
4,473,508 + AO353_20350 0.31 -0.1
4,473,509 - AO353_20350 0.31 -0.7
4,473,509 - AO353_20350 0.31 -1.3
4,473,509 - AO353_20350 0.31 +0.1
4,473,577 + AO353_20350 0.37 +0.1
4,473,578 - AO353_20350 0.37 +2.1
4,473,793 + AO353_20350 0.55 +0.7
4,473,793 + AO353_20350 0.55 -1.6
4,473,794 - AO353_20350 0.55 -0.5
4,473,802 + AO353_20350 0.56 +1.1
4,473,802 + AO353_20350 0.56 +0.1
4,473,802 + AO353_20350 0.56 +0.1
4,473,802 + AO353_20350 0.56 -1.2
4,473,802 + AO353_20350 0.56 -1.2
4,473,802 + AO353_20350 0.56 -1.4
4,473,802 + AO353_20350 0.56 +0.1
4,473,802 + AO353_20350 0.56 -1.0
4,473,802 + AO353_20350 0.56 -0.6
4,473,803 - AO353_20350 0.56 -0.3
4,473,803 - AO353_20350 0.56 -2.3
4,473,803 - AO353_20350 0.56 -0.1
4,473,803 - AO353_20350 0.56 +0.6
4,473,803 - AO353_20350 0.56 -1.0
4,473,803 - AO353_20350 0.56 -0.9
4,473,803 - AO353_20350 0.56 +0.4
4,473,856 + AO353_20350 0.61 -1.9
4,473,856 + AO353_20350 0.61 -0.8
4,473,856 + AO353_20350 0.61 -1.5
4,473,856 + AO353_20350 0.61 -0.5
4,473,856 + AO353_20350 0.61 -0.1
4,473,856 + AO353_20350 0.61 -1.2
4,473,857 - AO353_20350 0.61 -0.8
4,473,857 - AO353_20350 0.61 -0.6
4,473,857 - AO353_20350 0.61 -1.1
4,473,857 - AO353_20350 0.61 -1.4
4,473,970 + AO353_20350 0.70 -3.0
4,473,970 + AO353_20350 0.70 -0.0
4,473,970 + AO353_20350 0.70 -0.1
4,473,971 - AO353_20350 0.71 -0.3
4,473,971 - AO353_20350 0.71 +1.1
4,474,102 + AO353_20350 0.82 -1.7
4,474,103 - AO353_20350 0.82 +0.3
4,474,123 + AO353_20350 0.84 -0.4
4,474,140 - +0.7
4,474,337 - -0.2
4,474,337 - +0.4
4,474,337 - -0.3
4,474,337 - +1.3
4,474,337 - +0.2
4,474,339 - +0.1
4,474,360 - -1.9
4,474,396 - +0.4
4,474,457 - +0.5
4,474,527 + -2.4
4,474,527 + -0.6
4,474,528 - +1.3
4,474,540 + -0.7
4,474,541 - +0.3
4,474,545 + -1.1
4,474,546 - +0.5
4,474,546 - -1.8
4,474,554 + +0.1
4,474,598 + +0.3
4,474,598 + -0.1
4,474,598 + +0.8
4,474,598 + +0.2
4,474,598 + -0.5
4,474,598 + -0.7
4,474,598 + -1.5
4,474,598 + -0.2
4,474,598 + -0.5
4,474,598 + -0.1
4,474,599 - -0.9
4,474,599 - +0.6
4,474,658 - +0.5
4,474,658 - -0.1
4,474,673 + -1.3
4,474,673 + -1.7
4,474,673 + -0.6
4,474,674 - +1.1
4,474,674 - +0.3
4,474,674 - +0.7
4,474,913 + AO353_20355 0.20 +0.1
4,474,914 - AO353_20355 0.21 -1.2
4,474,977 - AO353_20355 0.24 +0.4
4,475,204 + AO353_20355 0.38 +0.8
4,475,204 + AO353_20355 0.38 -1.4
4,475,204 + AO353_20355 0.38 +1.4
4,475,204 + AO353_20355 0.38 -0.1
4,475,204 + AO353_20355 0.38 -0.5
4,475,205 - AO353_20355 0.38 +0.4
4,475,205 - AO353_20355 0.38 +1.0
4,475,205 - AO353_20355 0.38 -0.5
4,475,205 - AO353_20355 0.38 +1.5
4,475,205 - AO353_20355 0.38 -0.9
4,475,205 - AO353_20355 0.38 +0.3
4,475,205 - AO353_20355 0.38 -1.3
4,475,205 - AO353_20355 0.38 +0.7
4,475,205 - AO353_20355 0.38 -0.3
4,475,205 - AO353_20355 0.38 -0.2
4,475,252 + AO353_20355 0.40 -1.4
4,475,252 + AO353_20355 0.40 -0.9
4,475,253 - AO353_20355 0.41 -1.1
4,475,253 - AO353_20355 0.41 -2.0
4,475,253 - AO353_20355 0.41 -0.6
4,475,253 - AO353_20355 0.41 -0.5
4,475,253 - AO353_20355 0.41 -0.1
4,475,253 - AO353_20355 0.41 +1.2
4,475,273 + AO353_20355 0.42 -1.0
4,475,273 + AO353_20355 0.42 +0.1
4,475,273 + AO353_20355 0.42 -1.3
4,475,273 + AO353_20355 0.42 -0.4
4,475,273 + AO353_20355 0.42 +1.0
4,475,274 - AO353_20355 0.42 +1.2
4,475,274 - AO353_20355 0.42 -1.2
4,475,274 - AO353_20355 0.42 +0.7
4,475,274 - AO353_20355 0.42 -0.8
4,475,274 - AO353_20355 0.42 -0.1
4,475,274 - AO353_20355 0.42 -0.0
4,475,274 - AO353_20355 0.42 -0.0
4,475,274 - AO353_20355 0.42 -0.8
4,475,274 - AO353_20355 0.42 -0.4

Or see this region's nucleotide sequence