Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03855

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03850 and AO353_03855 are separated by 149 nucleotidesAO353_03855 and AO353_03860 are separated by 216 nucleotides AO353_03850: AO353_03850 - ABC transporter permease, at 822,304 to 823,212 _03850 AO353_03855: AO353_03855 - spermidine/putrescine ABC transporter substrate-binding protein, at 823,362 to 824,465 _03855 AO353_03860: AO353_03860 - aldehyde dehydrogenase, at 824,682 to 826,130 _03860 Position (kb) 823 824 825Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 822.516 kb on - strand, within AO353_03850at 822.626 kb on + strand, within AO353_03850at 822.626 kb on + strand, within AO353_03850at 822.626 kb on + strand, within AO353_03850at 822.627 kb on - strand, within AO353_03850at 822.627 kb on - strand, within AO353_03850at 822.627 kb on - strand, within AO353_03850at 822.627 kb on - strand, within AO353_03850at 822.627 kb on - strand, within AO353_03850at 822.691 kb on + strand, within AO353_03850at 822.691 kb on + strand, within AO353_03850at 822.692 kb on - strand, within AO353_03850at 822.706 kb on + strand, within AO353_03850at 822.707 kb on - strand, within AO353_03850at 822.707 kb on - strand, within AO353_03850at 822.707 kb on - strand, within AO353_03850at 822.707 kb on - strand, within AO353_03850at 822.707 kb on - strand, within AO353_03850at 822.722 kb on + strand, within AO353_03850at 822.722 kb on + strand, within AO353_03850at 822.722 kb on + strand, within AO353_03850at 822.722 kb on + strand, within AO353_03850at 822.722 kb on + strand, within AO353_03850at 822.722 kb on + strand, within AO353_03850at 822.722 kb on + strand, within AO353_03850at 822.812 kb on + strand, within AO353_03850at 822.812 kb on + strand, within AO353_03850at 822.813 kb on - strand, within AO353_03850at 822.905 kb on + strand, within AO353_03850at 822.905 kb on + strand, within AO353_03850at 822.905 kb on + strand, within AO353_03850at 822.905 kb on + strand, within AO353_03850at 822.906 kb on - strand, within AO353_03850at 822.906 kb on - strand, within AO353_03850at 822.906 kb on - strand, within AO353_03850at 822.906 kb on - strand, within AO353_03850at 822.929 kb on - strand, within AO353_03850at 822.986 kb on + strand, within AO353_03850at 822.986 kb on + strand, within AO353_03850at 822.986 kb on + strand, within AO353_03850at 822.986 kb on + strand, within AO353_03850at 822.986 kb on + strand, within AO353_03850at 822.986 kb on + strand, within AO353_03850at 822.986 kb on + strand, within AO353_03850at 822.986 kb on + strand, within AO353_03850at 822.987 kb on - strand, within AO353_03850at 822.987 kb on - strand, within AO353_03850at 822.987 kb on - strand, within AO353_03850at 822.989 kb on + strand, within AO353_03850at 822.990 kb on - strand, within AO353_03850at 822.990 kb on - strand, within AO353_03850at 822.990 kb on - strand, within AO353_03850at 822.990 kb on - strand, within AO353_03850at 822.990 kb on - strand, within AO353_03850at 822.990 kb on - strand, within AO353_03850at 823.010 kb on + strand, within AO353_03850at 823.010 kb on + strand, within AO353_03850at 823.010 kb on + strand, within AO353_03850at 823.011 kb on - strand, within AO353_03850at 823.011 kb on - strand, within AO353_03850at 823.126 kb on + strandat 823.127 kb on - strandat 823.212 kb on + strandat 823.212 kb on + strandat 823.212 kb on + strandat 823.287 kb on + strandat 823.293 kb on + strandat 823.293 kb on + strandat 823.293 kb on + strandat 823.293 kb on + strandat 823.293 kb on + strandat 823.294 kb on - strandat 823.294 kb on - strandat 823.294 kb on - strandat 823.294 kb on - strandat 823.309 kb on + strandat 823.309 kb on + strandat 823.309 kb on + strandat 823.474 kb on + strand, within AO353_03855at 823.474 kb on + strand, within AO353_03855at 823.474 kb on + strand, within AO353_03855at 823.474 kb on + strand, within AO353_03855at 823.474 kb on + strand, within AO353_03855at 823.475 kb on - strand, within AO353_03855at 823.475 kb on - strand, within AO353_03855at 823.475 kb on - strand, within AO353_03855at 823.475 kb on - strand, within AO353_03855at 823.475 kb on - strand, within AO353_03855at 823.475 kb on - strand, within AO353_03855at 823.531 kb on + strand, within AO353_03855at 823.531 kb on + strand, within AO353_03855at 823.531 kb on + strand, within AO353_03855at 823.531 kb on + strand, within AO353_03855at 823.531 kb on + strand, within AO353_03855at 823.531 kb on + strand, within AO353_03855at 823.531 kb on + strand, within AO353_03855at 823.531 kb on + strand, within AO353_03855at 823.531 kb on + strand, within AO353_03855at 823.531 kb on + strand, within AO353_03855at 823.531 kb on + strand, within AO353_03855at 823.531 kb on + strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.591 kb on + strand, within AO353_03855at 823.591 kb on + strand, within AO353_03855at 823.651 kb on + strand, within AO353_03855at 823.651 kb on + strand, within AO353_03855at 823.651 kb on + strand, within AO353_03855at 823.652 kb on - strand, within AO353_03855at 823.690 kb on + strand, within AO353_03855at 823.690 kb on + strand, within AO353_03855at 823.690 kb on + strand, within AO353_03855at 823.690 kb on + strand, within AO353_03855at 823.691 kb on - strand, within AO353_03855at 823.691 kb on - strand, within AO353_03855at 823.691 kb on - strand, within AO353_03855at 823.732 kb on + strand, within AO353_03855at 823.732 kb on + strand, within AO353_03855at 823.732 kb on + strand, within AO353_03855at 823.732 kb on + strand, within AO353_03855at 823.732 kb on + strand, within AO353_03855at 823.732 kb on + strand, within AO353_03855at 823.732 kb on + strand, within AO353_03855at 823.732 kb on + strand, within AO353_03855at 823.733 kb on - strand, within AO353_03855at 823.733 kb on - strand, within AO353_03855at 823.733 kb on - strand, within AO353_03855at 823.733 kb on - strand, within AO353_03855at 823.733 kb on - strand, within AO353_03855at 823.969 kb on + strand, within AO353_03855at 823.969 kb on + strand, within AO353_03855at 823.969 kb on + strand, within AO353_03855at 823.970 kb on - strand, within AO353_03855at 823.970 kb on - strand, within AO353_03855at 823.970 kb on - strand, within AO353_03855at 823.970 kb on - strand, within AO353_03855at 823.970 kb on - strand, within AO353_03855at 823.970 kb on - strand, within AO353_03855at 824.005 kb on + strand, within AO353_03855at 824.006 kb on - strand, within AO353_03855at 824.033 kb on - strand, within AO353_03855at 824.066 kb on - strand, within AO353_03855at 824.176 kb on + strand, within AO353_03855at 824.176 kb on + strand, within AO353_03855at 824.177 kb on - strand, within AO353_03855at 824.177 kb on - strand, within AO353_03855at 824.225 kb on + strand, within AO353_03855at 824.226 kb on - strand, within AO353_03855at 824.226 kb on - strand, within AO353_03855at 824.226 kb on - strand, within AO353_03855at 824.226 kb on - strand, within AO353_03855at 824.226 kb on - strand, within AO353_03855at 824.421 kb on + strandat 824.422 kb on - strandat 824.479 kb on + strandat 824.479 kb on + strandat 824.479 kb on + strandat 824.479 kb on + strandat 824.480 kb on - strandat 824.480 kb on - strandat 824.480 kb on - strandat 824.480 kb on - strandat 824.480 kb on - strandat 824.480 kb on - strandat 824.480 kb on - strandat 824.487 kb on + strandat 824.487 kb on + strandat 824.487 kb on + strandat 824.487 kb on + strandat 824.487 kb on + strandat 824.488 kb on - strandat 824.488 kb on - strandat 824.488 kb on - strandat 824.488 kb on - strandat 824.488 kb on - strandat 824.491 kb on + strandat 824.491 kb on + strandat 824.491 kb on + strandat 824.491 kb on + strandat 824.491 kb on + strandat 824.491 kb on + strandat 824.491 kb on + strandat 824.491 kb on + strandat 824.491 kb on + strandat 824.491 kb on + strandat 824.491 kb on + strandat 824.492 kb on - strandat 824.492 kb on - strandat 824.492 kb on - strandat 824.492 kb on - strandat 824.492 kb on - strandat 824.498 kb on + strandat 824.499 kb on - strandat 824.548 kb on + strandat 824.549 kb on - strandat 824.549 kb on - strandat 824.549 kb on - strandat 824.549 kb on - strandat 824.706 kb on + strandat 824.706 kb on + strandat 824.706 kb on + strandat 824.706 kb on + strandat 824.707 kb on - strandat 824.707 kb on - strandat 824.707 kb on - strandat 824.707 kb on - strandat 824.707 kb on - strandat 824.767 kb on + strandat 825.034 kb on + strand, within AO353_03860at 825.034 kb on + strand, within AO353_03860at 825.034 kb on + strand, within AO353_03860at 825.128 kb on - strand, within AO353_03860

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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822,516 - AO353_03850 0.23 +0.5
822,626 + AO353_03850 0.35 -0.2
822,626 + AO353_03850 0.35 +0.5
822,626 + AO353_03850 0.35 +2.1
822,627 - AO353_03850 0.36 +0.1
822,627 - AO353_03850 0.36 -0.1
822,627 - AO353_03850 0.36 -0.6
822,627 - AO353_03850 0.36 -1.9
822,627 - AO353_03850 0.36 -0.0
822,691 + AO353_03850 0.43 -0.5
822,691 + AO353_03850 0.43 -0.1
822,692 - AO353_03850 0.43 -1.3
822,706 + AO353_03850 0.44 -0.8
822,707 - AO353_03850 0.44 +1.1
822,707 - AO353_03850 0.44 -0.5
822,707 - AO353_03850 0.44 +0.6
822,707 - AO353_03850 0.44 +0.7
822,707 - AO353_03850 0.44 +1.8
822,722 + AO353_03850 0.46 +0.0
822,722 + AO353_03850 0.46 -1.2
822,722 + AO353_03850 0.46 +1.0
822,722 + AO353_03850 0.46 -0.5
822,722 + AO353_03850 0.46 -0.2
822,722 + AO353_03850 0.46 +0.3
822,722 + AO353_03850 0.46 +0.4
822,812 + AO353_03850 0.56 +0.7
822,812 + AO353_03850 0.56 +1.2
822,813 - AO353_03850 0.56 +0.4
822,905 + AO353_03850 0.66 -0.1
822,905 + AO353_03850 0.66 +1.1
822,905 + AO353_03850 0.66 -1.2
822,905 + AO353_03850 0.66 -0.3
822,906 - AO353_03850 0.66 +1.0
822,906 - AO353_03850 0.66 -0.1
822,906 - AO353_03850 0.66 -0.3
822,906 - AO353_03850 0.66 -1.1
822,929 - AO353_03850 0.69 -0.4
822,986 + AO353_03850 0.75 +0.5
822,986 + AO353_03850 0.75 +0.8
822,986 + AO353_03850 0.75 -0.5
822,986 + AO353_03850 0.75 +0.7
822,986 + AO353_03850 0.75 -1.7
822,986 + AO353_03850 0.75 -1.0
822,986 + AO353_03850 0.75 +0.5
822,986 + AO353_03850 0.75 -1.2
822,987 - AO353_03850 0.75 +1.7
822,987 - AO353_03850 0.75 +0.5
822,987 - AO353_03850 0.75 -1.0
822,989 + AO353_03850 0.75 +1.1
822,990 - AO353_03850 0.75 +0.7
822,990 - AO353_03850 0.75 +0.1
822,990 - AO353_03850 0.75 -0.3
822,990 - AO353_03850 0.75 +0.5
822,990 - AO353_03850 0.75 -1.8
822,990 - AO353_03850 0.75 -1.5
823,010 + AO353_03850 0.78 -1.4
823,010 + AO353_03850 0.78 -0.6
823,010 + AO353_03850 0.78 +2.5
823,011 - AO353_03850 0.78 -1.4
823,011 - AO353_03850 0.78 -0.8
823,126 + -0.1
823,127 - -0.6
823,212 + -1.2
823,212 + +0.3
823,212 + +0.7
823,287 + -0.9
823,293 + -1.1
823,293 + -2.1
823,293 + +0.8
823,293 + -1.0
823,293 + +0.9
823,294 - -0.8
823,294 - -0.2
823,294 - -2.5
823,294 - +0.3
823,309 + +0.1
823,309 + +0.3
823,309 + -1.2
823,474 + AO353_03855 0.10 +1.0
823,474 + AO353_03855 0.10 +1.0
823,474 + AO353_03855 0.10 -1.6
823,474 + AO353_03855 0.10 -1.5
823,474 + AO353_03855 0.10 -1.3
823,475 - AO353_03855 0.10 -1.4
823,475 - AO353_03855 0.10 -1.3
823,475 - AO353_03855 0.10 +1.1
823,475 - AO353_03855 0.10 -0.0
823,475 - AO353_03855 0.10 +1.5
823,475 - AO353_03855 0.10 +1.7
823,531 + AO353_03855 0.15 +1.1
823,531 + AO353_03855 0.15 -0.5
823,531 + AO353_03855 0.15 +1.7
823,531 + AO353_03855 0.15 +0.3
823,531 + AO353_03855 0.15 -0.4
823,531 + AO353_03855 0.15 -0.6
823,531 + AO353_03855 0.15 -0.0
823,531 + AO353_03855 0.15 -1.3
823,531 + AO353_03855 0.15 -0.4
823,531 + AO353_03855 0.15 +0.5
823,531 + AO353_03855 0.15 +0.1
823,531 + AO353_03855 0.15 -0.3
823,532 - AO353_03855 0.15 +1.2
823,532 - AO353_03855 0.15 -0.5
823,532 - AO353_03855 0.15 -2.8
823,532 - AO353_03855 0.15 -0.5
823,532 - AO353_03855 0.15 -0.0
823,532 - AO353_03855 0.15 +0.2
823,532 - AO353_03855 0.15 -0.6
823,532 - AO353_03855 0.15 -0.3
823,532 - AO353_03855 0.15 -0.5
823,532 - AO353_03855 0.15 +1.0
823,532 - AO353_03855 0.15 +0.3
823,532 - AO353_03855 0.15 +1.8
823,532 - AO353_03855 0.15 -0.0
823,532 - AO353_03855 0.15 -1.1
823,532 - AO353_03855 0.15 +1.4
823,591 + AO353_03855 0.21 -0.4
823,591 + AO353_03855 0.21 +0.5
823,651 + AO353_03855 0.26 +0.2
823,651 + AO353_03855 0.26 -0.2
823,651 + AO353_03855 0.26 +0.7
823,652 - AO353_03855 0.26 -0.1
823,690 + AO353_03855 0.30 -1.0
823,690 + AO353_03855 0.30 -1.0
823,690 + AO353_03855 0.30 -0.6
823,690 + AO353_03855 0.30 +0.1
823,691 - AO353_03855 0.30 -1.9
823,691 - AO353_03855 0.30 -1.1
823,691 - AO353_03855 0.30 +1.7
823,732 + AO353_03855 0.34 -1.1
823,732 + AO353_03855 0.34 -1.2
823,732 + AO353_03855 0.34 -1.0
823,732 + AO353_03855 0.34 -1.4
823,732 + AO353_03855 0.34 -0.0
823,732 + AO353_03855 0.34 -0.8
823,732 + AO353_03855 0.34 +1.5
823,732 + AO353_03855 0.34 +1.3
823,733 - AO353_03855 0.34 -1.0
823,733 - AO353_03855 0.34 -0.8
823,733 - AO353_03855 0.34 -0.2
823,733 - AO353_03855 0.34 +0.1
823,733 - AO353_03855 0.34 +0.4
823,969 + AO353_03855 0.55 -0.3
823,969 + AO353_03855 0.55 -0.7
823,969 + AO353_03855 0.55 +0.1
823,970 - AO353_03855 0.55 +0.0
823,970 - AO353_03855 0.55 +0.3
823,970 - AO353_03855 0.55 -3.0
823,970 - AO353_03855 0.55 +1.6
823,970 - AO353_03855 0.55 +1.3
823,970 - AO353_03855 0.55 -0.5
824,005 + AO353_03855 0.58 -0.5
824,006 - AO353_03855 0.58 -0.7
824,033 - AO353_03855 0.61 -1.7
824,066 - AO353_03855 0.64 +0.6
824,176 + AO353_03855 0.74 +1.1
824,176 + AO353_03855 0.74 -1.9
824,177 - AO353_03855 0.74 +0.3
824,177 - AO353_03855 0.74 +0.5
824,225 + AO353_03855 0.78 -0.3
824,226 - AO353_03855 0.78 +1.3
824,226 - AO353_03855 0.78 -1.6
824,226 - AO353_03855 0.78 +0.2
824,226 - AO353_03855 0.78 -0.1
824,226 - AO353_03855 0.78 -0.9
824,421 + -1.1
824,422 - +0.3
824,479 + +1.0
824,479 + -0.9
824,479 + -0.3
824,479 + -0.4
824,480 - -0.5
824,480 - +1.1
824,480 - -1.9
824,480 - -0.3
824,480 - -1.4
824,480 - +0.1
824,480 - +1.3
824,487 + +0.3
824,487 + +0.7
824,487 + -0.6
824,487 + +0.2
824,487 + -0.5
824,488 - -1.4
824,488 - -1.4
824,488 - +0.9
824,488 - -0.1
824,488 - -2.3
824,491 + +0.5
824,491 + +0.1
824,491 + +0.4
824,491 + -0.3
824,491 + -0.9
824,491 + +1.2
824,491 + -0.7
824,491 + +0.2
824,491 + -1.7
824,491 + +2.5
824,491 + +0.3
824,492 - -0.5
824,492 - -0.6
824,492 - -0.3
824,492 - -0.2
824,492 - -0.9
824,498 + -1.0
824,499 - -0.1
824,548 + -0.5
824,549 - +0.5
824,549 - +0.7
824,549 - +0.2
824,549 - +0.9
824,706 + -0.3
824,706 + -1.0
824,706 + -2.0
824,706 + +0.2
824,707 - +2.1
824,707 - +1.9
824,707 - +1.3
824,707 - -0.9
824,707 - -0.3
824,767 + -0.4
825,034 + AO353_03860 0.24 +0.7
825,034 + AO353_03860 0.24 +0.6
825,034 + AO353_03860 0.24 -1.7
825,128 - AO353_03860 0.31 -0.5

Or see this region's nucleotide sequence