Strain Fitness in Shewanella amazonensis SB2B around Sama_1679

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
2,052,456	+		Sama_1678	0.43	-0.5
2,052,457	-		Sama_1678	0.43	+1.2
2,052,530	+		Sama_1678	0.47	+1.1
2,052,531	-		Sama_1678	0.47	-0.6
2,052,552	+		Sama_1678	0.48	+0.6
2,052,553	-		Sama_1678	0.48	-2.4
2,052,566	+		Sama_1678	0.49	-2.1
2,052,683	-		Sama_1678	0.56	-0.4
2,052,696	+		Sama_1678	0.57	+1.0
2,052,696	+		Sama_1678	0.57	-1.3
2,052,696	+		Sama_1678	0.57	-1.2
2,052,696	+		Sama_1678	0.57	-1.4
2,052,697	-		Sama_1678	0.57	+1.1
2,052,697	-		Sama_1678	0.57	+0.4
2,052,697	-		Sama_1678	0.57	-0.8
2,052,697	-		Sama_1678	0.57	-0.1
2,052,697	-		Sama_1678	0.57	-1.5
2,052,697	-		Sama_1678	0.57	-1.4
2,052,737	+		Sama_1678	0.59	-0.2
2,052,738	-		Sama_1678	0.59	-1.1
2,052,749	+		Sama_1678	0.60	+0.2
2,052,749	+		Sama_1678	0.60	+3.2
2,052,749	+		Sama_1678	0.60	+0.2
2,052,750	-		Sama_1678	0.60	-0.3
2,052,856	-		Sama_1678	0.66	+1.6
2,052,895	+		Sama_1678	0.68	-1.9
2,052,895	+		Sama_1678	0.68	+1.1
2,052,896	-		Sama_1678	0.68	+0.2
2,052,897	+		Sama_1678	0.69	-0.4
2,052,897	+		Sama_1678	0.69	-1.2
2,052,897	+		Sama_1678	0.69	+0.0
2,052,897	+		Sama_1678	0.69	-0.1
2,052,898	-		Sama_1678	0.69	+0.3
2,052,898	-		Sama_1678	0.69	-1.2
2,052,898	-		Sama_1678	0.69	-2.5
2,052,915	+		Sama_1678	0.70	-1.5
2,052,915	+		Sama_1678	0.70	-0.4
2,053,021	-		Sama_1678	0.76	+0.3
2,053,021	-		Sama_1678	0.76	-0.0
2,053,104	+		Sama_1678	0.81	-0.5
2,053,104	+		Sama_1678	0.81	+1.6
2,053,105	-		Sama_1678	0.81	-0.6
2,053,105	-		Sama_1678	0.81	-2.1
2,053,105	-		Sama_1678	0.81	-2.6
2,053,105	-		Sama_1678	0.81	-1.4
2,053,115	+		Sama_1678	0.81	-1.6
2,053,115	+		Sama_1678	0.81	-0.2
2,053,115	+		Sama_1678	0.81	-2.0
2,053,115	+		Sama_1678	0.81	-0.8
2,053,115	+		Sama_1678	0.81	-2.6
2,053,115	+		Sama_1678	0.81	+0.1
2,053,116	-		Sama_1678	0.81	+1.1
2,053,116	-		Sama_1678	0.81	-1.0
2,053,116	-		Sama_1678	0.81	+2.5
2,053,116	-		Sama_1678	0.81	-1.2
2,053,116	-		Sama_1678	0.81	+0.3
2,053,116	-		Sama_1678	0.81	+0.4
2,053,116	-		Sama_1678	0.81	-1.7
2,053,117	+		Sama_1678	0.81	-0.6
2,053,117	+		Sama_1678	0.81	+2.8
2,053,117	+		Sama_1678	0.81	+3.1
2,053,117	+		Sama_1678	0.81	-0.4
2,053,117	+		Sama_1678	0.81	+1.7
2,053,117	+		Sama_1678	0.81	+1.2
2,053,117	+		Sama_1678	0.81	+2.4
2,053,118	-		Sama_1678	0.82	+0.2
2,053,118	-		Sama_1678	0.82	-1.1
2,053,118	-		Sama_1678	0.82	-0.2
2,053,118	-		Sama_1678	0.82	+0.6
2,053,118	-		Sama_1678	0.82	-1.3
2,053,129	+		Sama_1678	0.82	+0.2
2,053,130	-		Sama_1678	0.82	+0.9
2,053,130	-		Sama_1678	0.82	-0.2
2,053,130	-		Sama_1678	0.82	-2.1
2,053,131	+		Sama_1678	0.82	-0.0
2,053,131	+		Sama_1678	0.82	+0.9
2,053,131	+		Sama_1678	0.82	-0.7
2,053,131	+		Sama_1678	0.82	-0.8
2,053,131	+		Sama_1678	0.82	+0.6
2,053,161	+		Sama_1678	0.84	-2.4
2,053,234	-		Sama_1678	0.88	-0.2
2,053,253	-		Sama_1678	0.89	-1.4
2,053,253	-		Sama_1678	0.89	-1.1
2,053,364	+				+1.1
2,053,364	+				+0.3
2,053,364	+				-2.0
2,053,365	-				-0.4
2,053,365	-				-0.1
2,053,414	+				+0.7
2,053,415	-				+1.1
2,053,437	+				+0.6
2,053,460	+				+0.1
2,053,461	-				-3.0
2,053,520	+				-1.1
2,053,520	+				-2.5
2,053,521	-				-1.8
2,053,622	-		Sama_1679	0.16	+1.4
2,053,654	+		Sama_1679	0.19	-2.1
2,053,654	+		Sama_1679	0.19	-2.6
2,053,654	+		Sama_1679	0.19	+2.2
2,053,695	+		Sama_1679	0.23	-2.3
2,053,696	-		Sama_1679	0.23	-2.1
2,053,696	-		Sama_1679	0.23	+2.7
2,053,705	+		Sama_1679	0.24	-1.1
2,053,719	+		Sama_1679	0.25	+0.0
2,053,720	-		Sama_1679	0.25	+2.2
2,053,720	-		Sama_1679	0.25	-0.6
2,053,804	+		Sama_1679	0.32	+0.2
2,053,805	-		Sama_1679	0.32	-0.9
2,053,805	-		Sama_1679	0.32	-1.6
2,053,843	+		Sama_1679	0.36	-1.0
2,053,849	+		Sama_1679	0.36	+0.2
2,053,884	+		Sama_1679	0.39	-0.5
2,053,884	+		Sama_1679	0.39	-1.1
2,053,884	+		Sama_1679	0.39	-1.4
2,053,885	-		Sama_1679	0.39	-0.8
2,053,885	-		Sama_1679	0.39	-1.5
2,053,885	-		Sama_1679	0.39	-0.1
2,053,885	-		Sama_1679	0.39	-1.3
2,053,937	-		Sama_1679	0.44	-1.4
2,053,992	+		Sama_1679	0.49	+0.9
2,054,036	+		Sama_1679	0.53	-0.1
2,054,095	+		Sama_1679	0.58	-2.8
2,054,095	+		Sama_1679	0.58	+1.0
2,054,096	-		Sama_1679	0.58	+3.2
2,054,096	-		Sama_1679	0.58	-2.5
2,054,096	-		Sama_1679	0.58	-2.3
2,054,160	+		Sama_1679	0.64	+2.2
2,054,160	+		Sama_1679	0.64	-0.6
2,054,160	+		Sama_1679	0.64	+0.6
2,054,160	+		Sama_1679	0.64	+0.2
2,054,172	+		Sama_1679	0.65	-1.1
2,054,254	+		Sama_1679	0.72	-1.1
2,054,255	-		Sama_1679	0.72	-1.0
2,054,255	-		Sama_1679	0.72	-2.4
2,054,320	+		Sama_1679	0.78	-0.8
2,054,390	-		Sama_1679	0.84	-0.1
2,054,443	+		Sama_1679	0.89	+0.9
2,054,443	+		Sama_1679	0.89	-1.1
2,054,550	+				+0.9
2,054,567	-				-1.5
2,054,595	+				+1.6
2,054,602	+				+0.2
2,054,602	+				-2.0
2,054,642	+				-1.1
2,054,642	+				-0.7
2,054,642	+				+0.2
2,054,642	+				-0.3
2,054,643	-				-1.5
2,054,643	-				-0.9
2,054,664	+				+3.6
2,054,664	+				+0.6
2,054,670	+				+0.2
2,054,703	-				+0.5
2,054,857	+				+3.3
2,054,871	+				-1.4
2,054,876	+				+0.5
2,054,884	+				+0.6
2,054,884	+				-0.3
2,054,889	+				-1.1
2,054,889	+				+0.3
2,054,951	+				-1.4
2,054,951	+				+0.9
2,054,952	-				+1.1
2,054,952	-				+1.4
2,054,972	+		Sama_1680	0.13	+0.7
2,054,972	+		Sama_1680	0.13	-1.4
2,054,998	+		Sama_1680	0.18	-0.5
2,054,998	+		Sama_1680	0.18	-0.5
2,054,999	-		Sama_1680	0.18	-0.4
2,054,999	-		Sama_1680	0.18	+1.0
2,055,024	+		Sama_1680	0.23	+4.2
2,055,024	+		Sama_1680	0.23	+1.3
2,055,024	+		Sama_1680	0.23	+1.9
2,055,025	-		Sama_1680	0.23	-0.0
2,055,025	-		Sama_1680	0.23	+0.1
2,055,025	-		Sama_1680	0.23	-0.4
2,055,082	+		Sama_1680	0.34	+0.4
2,055,082	+		Sama_1680	0.34	-0.2
2,055,083	-		Sama_1680	0.34	+0.9
2,055,083	-		Sama_1680	0.34	-1.4
2,055,158	-		Sama_1680	0.48	+2.1
2,055,183	-		Sama_1680	0.53	+2.0
2,055,237	+		Sama_1680	0.64	-0.4
2,055,260	-		Sama_1680	0.68	+0.6
2,055,279	-		Sama_1680	0.72	+0.1
2,055,279	-		Sama_1680	0.72	+0.9
2,055,385	+				+0.2
2,055,385	+				-1.2
2,055,386	-				-0.5
2,055,407	+				+0.8
2,055,530	+		Sama_1681	0.48	+0.6