Strain Fitness in Shewanella amazonensis SB2B around Sama_0436

Experiment: Motility assay, center cut sample 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSama_0434 and Sama_0435 are separated by 133 nucleotidesSama_0435 and Sama_0436 are separated by 227 nucleotidesSama_0436 and Sama_0437 are separated by 109 nucleotidesSama_0437 and Sama_0438 are separated by 1 nucleotides Sama_0434: Sama_0434 - putative secreted hydrolase (RefSeq), at 533,075 to 534,367 _0434 Sama_0435: Sama_0435 - putative phosphoglycerate mutase family protein (RefSeq), at 534,501 to 535,082 _0435 Sama_0436: Sama_0436 - putative lipoprotein (RefSeq), at 535,310 to 535,879 _0436 Sama_0437: Sama_0437 - response regulator receiver protein (RefSeq), at 535,989 to 536,702 _0437 Sama_0438: Sama_0438 - signal transduction histidine kinase-like protein (RefSeq), at 536,704 to 538,971 _0438 Position (kb) 535 536Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 534.333 kb on + strandat 534.333 kb on + strandat 534.333 kb on + strandat 534.333 kb on + strandat 534.333 kb on + strandat 534.334 kb on - strandat 534.334 kb on - strandat 534.358 kb on + strandat 534.425 kb on + strandat 534.425 kb on + strandat 534.425 kb on + strandat 534.425 kb on + strandat 534.425 kb on + strandat 534.426 kb on - strandat 534.426 kb on - strandat 534.426 kb on - strandat 534.468 kb on + strandat 534.538 kb on + strandat 534.541 kb on + strandat 534.542 kb on - strandat 534.560 kb on + strand, within Sama_0435at 534.561 kb on - strand, within Sama_0435at 534.613 kb on - strand, within Sama_0435at 534.729 kb on + strand, within Sama_0435at 534.729 kb on + strand, within Sama_0435at 534.729 kb on + strand, within Sama_0435at 534.729 kb on + strand, within Sama_0435at 534.729 kb on + strand, within Sama_0435at 534.729 kb on + strand, within Sama_0435at 534.729 kb on + strand, within Sama_0435at 534.729 kb on + strand, within Sama_0435at 534.729 kb on + strand, within Sama_0435at 534.730 kb on - strand, within Sama_0435at 534.730 kb on - strand, within Sama_0435at 534.730 kb on - strand, within Sama_0435at 534.730 kb on - strand, within Sama_0435at 534.730 kb on - strand, within Sama_0435at 534.730 kb on - strand, within Sama_0435at 534.730 kb on - strand, within Sama_0435at 534.730 kb on - strand, within Sama_0435at 534.730 kb on - strand, within Sama_0435at 534.730 kb on - strand, within Sama_0435at 534.731 kb on + strand, within Sama_0435at 534.731 kb on + strand, within Sama_0435at 534.731 kb on + strand, within Sama_0435at 534.731 kb on + strand, within Sama_0435at 534.732 kb on - strand, within Sama_0435at 534.732 kb on - strand, within Sama_0435at 534.732 kb on - strand, within Sama_0435at 534.732 kb on - strand, within Sama_0435at 534.732 kb on - strand, within Sama_0435at 534.732 kb on - strand, within Sama_0435at 534.732 kb on - strand, within Sama_0435at 534.733 kb on + strand, within Sama_0435at 534.733 kb on + strand, within Sama_0435at 534.733 kb on + strand, within Sama_0435at 534.733 kb on + strand, within Sama_0435at 534.733 kb on + strand, within Sama_0435at 534.734 kb on - strand, within Sama_0435at 534.734 kb on - strand, within Sama_0435at 534.734 kb on - strand, within Sama_0435at 534.734 kb on - strand, within Sama_0435at 534.785 kb on + strand, within Sama_0435at 534.785 kb on + strand, within Sama_0435at 534.785 kb on + strand, within Sama_0435at 534.786 kb on - strand, within Sama_0435at 534.786 kb on - strand, within Sama_0435at 534.786 kb on - strand, within Sama_0435at 534.823 kb on - strand, within Sama_0435at 534.837 kb on + strand, within Sama_0435at 534.925 kb on + strand, within Sama_0435at 534.925 kb on + strand, within Sama_0435at 534.925 kb on + strand, within Sama_0435at 534.926 kb on - strand, within Sama_0435at 534.926 kb on - strand, within Sama_0435at 534.926 kb on - strand, within Sama_0435at 534.964 kb on + strand, within Sama_0435at 534.964 kb on + strand, within Sama_0435at 535.092 kb on + strandat 535.109 kb on + strandat 535.122 kb on + strandat 535.122 kb on + strandat 535.122 kb on + strandat 535.183 kb on + strandat 535.183 kb on + strandat 535.183 kb on + strandat 535.285 kb on + strandat 535.286 kb on - strandat 535.323 kb on - strandat 535.323 kb on - strandat 535.326 kb on + strandat 535.326 kb on + strandat 535.326 kb on + strandat 535.326 kb on + strandat 535.326 kb on + strandat 535.326 kb on + strandat 535.327 kb on - strandat 535.327 kb on - strandat 535.327 kb on - strandat 535.327 kb on - strandat 535.327 kb on - strandat 535.327 kb on - strandat 535.327 kb on - strandat 535.327 kb on - strandat 535.344 kb on + strandat 535.345 kb on - strandat 535.345 kb on - strandat 535.345 kb on - strandat 535.345 kb on - strandat 535.345 kb on - strandat 535.345 kb on - strandat 535.363 kb on + strandat 535.363 kb on + strandat 535.429 kb on + strand, within Sama_0436at 535.430 kb on - strand, within Sama_0436at 535.430 kb on - strand, within Sama_0436at 535.433 kb on + strand, within Sama_0436at 535.433 kb on + strand, within Sama_0436at 535.433 kb on + strand, within Sama_0436at 535.434 kb on - strand, within Sama_0436at 535.434 kb on - strand, within Sama_0436at 535.434 kb on - strand, within Sama_0436at 535.434 kb on - strand, within Sama_0436at 535.434 kb on - strand, within Sama_0436at 535.434 kb on - strand, within Sama_0436at 535.434 kb on - strand, within Sama_0436at 535.434 kb on - strand, within Sama_0436at 535.434 kb on - strand, within Sama_0436at 535.434 kb on - strand, within Sama_0436at 535.434 kb on - strand, within Sama_0436at 535.434 kb on - strand, within Sama_0436at 535.434 kb on - strand, within Sama_0436at 535.435 kb on + strand, within Sama_0436at 535.435 kb on + strand, within Sama_0436at 535.435 kb on + strand, within Sama_0436at 535.488 kb on + strand, within Sama_0436at 535.489 kb on - strand, within Sama_0436at 535.489 kb on - strand, within Sama_0436at 535.508 kb on + strand, within Sama_0436at 535.508 kb on + strand, within Sama_0436at 535.508 kb on + strand, within Sama_0436at 535.509 kb on - strand, within Sama_0436at 535.537 kb on + strand, within Sama_0436at 535.537 kb on + strand, within Sama_0436at 535.537 kb on + strand, within Sama_0436at 535.538 kb on - strand, within Sama_0436at 535.538 kb on - strand, within Sama_0436at 535.538 kb on - strand, within Sama_0436at 535.552 kb on + strand, within Sama_0436at 535.553 kb on - strand, within Sama_0436at 535.553 kb on - strand, within Sama_0436at 535.571 kb on + strand, within Sama_0436at 535.571 kb on + strand, within Sama_0436at 535.571 kb on + strand, within Sama_0436at 535.571 kb on + strand, within Sama_0436at 535.571 kb on + strand, within Sama_0436at 535.571 kb on + strand, within Sama_0436at 535.571 kb on + strand, within Sama_0436at 535.572 kb on - strand, within Sama_0436at 535.572 kb on - strand, within Sama_0436at 535.572 kb on - strand, within Sama_0436at 535.575 kb on - strand, within Sama_0436at 535.608 kb on + strand, within Sama_0436at 535.608 kb on + strand, within Sama_0436at 535.608 kb on + strand, within Sama_0436at 535.615 kb on + strand, within Sama_0436at 535.616 kb on - strand, within Sama_0436at 535.634 kb on + strand, within Sama_0436at 535.634 kb on + strand, within Sama_0436at 535.634 kb on + strand, within Sama_0436at 535.636 kb on + strand, within Sama_0436at 535.636 kb on + strand, within Sama_0436at 535.637 kb on - strand, within Sama_0436at 535.637 kb on - strand, within Sama_0436at 535.637 kb on - strand, within Sama_0436at 535.671 kb on + strand, within Sama_0436at 535.750 kb on + strand, within Sama_0436at 535.750 kb on + strand, within Sama_0436at 535.751 kb on - strand, within Sama_0436at 535.757 kb on + strand, within Sama_0436at 535.758 kb on - strand, within Sama_0436at 535.758 kb on - strand, within Sama_0436at 535.758 kb on - strand, within Sama_0436at 535.830 kb on - strandat 535.831 kb on + strandat 535.831 kb on + strandat 535.831 kb on + strandat 535.832 kb on - strandat 535.852 kb on + strandat 535.871 kb on + strandat 535.871 kb on + strandat 535.871 kb on + strandat 535.872 kb on - strandat 535.877 kb on + strandat 535.877 kb on + strandat 535.877 kb on + strandat 535.877 kb on + strandat 535.878 kb on - strandat 535.878 kb on - strandat 535.878 kb on - strandat 535.945 kb on + strandat 535.945 kb on + strandat 535.946 kb on - strandat 535.946 kb on - strandat 535.949 kb on + strandat 535.949 kb on + strandat 535.949 kb on + strandat 535.949 kb on + strandat 535.950 kb on - strandat 535.953 kb on + strandat 535.954 kb on - strandat 535.967 kb on + strandat 535.967 kb on + strandat 535.968 kb on - strandat 535.968 kb on - strandat 535.968 kb on - strandat 535.968 kb on - strandat 535.968 kb on - strandat 536.006 kb on + strandat 536.122 kb on + strand, within Sama_0437at 536.123 kb on - strand, within Sama_0437at 536.123 kb on - strand, within Sama_0437at 536.123 kb on - strand, within Sama_0437at 536.123 kb on - strand, within Sama_0437at 536.208 kb on + strand, within Sama_0437at 536.289 kb on + strand, within Sama_0437at 536.289 kb on + strand, within Sama_0437at 536.289 kb on + strand, within Sama_0437at 536.289 kb on + strand, within Sama_0437at 536.289 kb on + strand, within Sama_0437at 536.289 kb on + strand, within Sama_0437at 536.289 kb on + strand, within Sama_0437at 536.289 kb on + strand, within Sama_0437at 536.289 kb on + strand, within Sama_0437at 536.289 kb on + strand, within Sama_0437at 536.290 kb on - strand, within Sama_0437at 536.290 kb on - strand, within Sama_0437at 536.290 kb on - strand, within Sama_0437at 536.290 kb on - strand, within Sama_0437at 536.290 kb on - strand, within Sama_0437at 536.423 kb on + strand, within Sama_0437at 536.423 kb on + strand, within Sama_0437at 536.423 kb on + strand, within Sama_0437at 536.424 kb on - strand, within Sama_0437at 536.424 kb on - strand, within Sama_0437at 536.424 kb on - strand, within Sama_0437at 536.432 kb on + strand, within Sama_0437at 536.433 kb on - strand, within Sama_0437at 536.465 kb on + strand, within Sama_0437at 536.509 kb on + strand, within Sama_0437at 536.509 kb on + strand, within Sama_0437at 536.510 kb on - strand, within Sama_0437at 536.582 kb on + strand, within Sama_0437at 536.592 kb on - strand, within Sama_0437at 536.592 kb on - strand, within Sama_0437at 536.594 kb on + strand, within Sama_0437at 536.594 kb on + strand, within Sama_0437at 536.595 kb on - strand, within Sama_0437at 536.595 kb on - strand, within Sama_0437at 536.682 kb on + strandat 536.682 kb on + strandat 536.683 kb on - strandat 536.683 kb on - strandat 536.683 kb on - strandat 536.683 kb on - strandat 536.686 kb on + strandat 536.686 kb on + strandat 536.686 kb on + strandat 536.723 kb on + strandat 536.724 kb on - strandat 536.879 kb on + strandat 536.879 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Motility assay, center cut sample 2
remove
534,333 + +0.4
534,333 + +0.5
534,333 + -0.5
534,333 + +0.8
534,333 + -0.2
534,334 - -0.9
534,334 - -0.6
534,358 + -1.0
534,425 + +0.9
534,425 + -0.6
534,425 + -0.1
534,425 + -1.6
534,425 + +0.8
534,426 - -1.0
534,426 - +3.3
534,426 - +2.8
534,468 + +0.5
534,538 + -0.1
534,541 + +1.0
534,542 - +1.1
534,560 + Sama_0435 0.10 -1.8
534,561 - Sama_0435 0.10 +1.1
534,613 - Sama_0435 0.19 -0.8
534,729 + Sama_0435 0.39 -3.3
534,729 + Sama_0435 0.39 -1.2
534,729 + Sama_0435 0.39 -2.4
534,729 + Sama_0435 0.39 -2.6
534,729 + Sama_0435 0.39 -1.5
534,729 + Sama_0435 0.39 -0.8
534,729 + Sama_0435 0.39 +2.0
534,729 + Sama_0435 0.39 +0.5
534,729 + Sama_0435 0.39 -0.5
534,730 - Sama_0435 0.39 -2.3
534,730 - Sama_0435 0.39 -0.5
534,730 - Sama_0435 0.39 -2.2
534,730 - Sama_0435 0.39 -1.8
534,730 - Sama_0435 0.39 -1.8
534,730 - Sama_0435 0.39 -1.6
534,730 - Sama_0435 0.39 -0.3
534,730 - Sama_0435 0.39 -0.5
534,730 - Sama_0435 0.39 -0.5
534,730 - Sama_0435 0.39 -1.0
534,731 + Sama_0435 0.40 +0.6
534,731 + Sama_0435 0.40 -1.8
534,731 + Sama_0435 0.40 +0.5
534,731 + Sama_0435 0.40 -1.0
534,732 - Sama_0435 0.40 +2.5
534,732 - Sama_0435 0.40 -0.4
534,732 - Sama_0435 0.40 -0.1
534,732 - Sama_0435 0.40 -0.6
534,732 - Sama_0435 0.40 +0.4
534,732 - Sama_0435 0.40 -0.1
534,732 - Sama_0435 0.40 +0.1
534,733 + Sama_0435 0.40 +1.6
534,733 + Sama_0435 0.40 -0.8
534,733 + Sama_0435 0.40 -2.2
534,733 + Sama_0435 0.40 +0.3
534,733 + Sama_0435 0.40 -1.6
534,734 - Sama_0435 0.40 -2.1
534,734 - Sama_0435 0.40 +0.5
534,734 - Sama_0435 0.40 +0.6
534,734 - Sama_0435 0.40 +0.3
534,785 + Sama_0435 0.49 +0.2
534,785 + Sama_0435 0.49 +1.2
534,785 + Sama_0435 0.49 +1.8
534,786 - Sama_0435 0.49 +0.4
534,786 - Sama_0435 0.49 +1.1
534,786 - Sama_0435 0.49 -1.5
534,823 - Sama_0435 0.55 -0.2
534,837 + Sama_0435 0.58 -1.4
534,925 + Sama_0435 0.73 -1.8
534,925 + Sama_0435 0.73 -2.3
534,925 + Sama_0435 0.73 +1.7
534,926 - Sama_0435 0.73 -0.1
534,926 - Sama_0435 0.73 -1.9
534,926 - Sama_0435 0.73 -0.6
534,964 + Sama_0435 0.80 +2.0
534,964 + Sama_0435 0.80 -2.6
535,092 + +0.2
535,109 + +0.6
535,122 + -0.2
535,122 + +2.2
535,122 + +0.3
535,183 + -2.1
535,183 + +1.1
535,183 + -0.5
535,285 + +0.5
535,286 - -1.6
535,323 - -0.5
535,323 - +1.9
535,326 + -3.3
535,326 + +0.7
535,326 + -1.4
535,326 + +2.7
535,326 + +0.1
535,326 + -1.0
535,327 - -0.6
535,327 - -1.8
535,327 - -0.2
535,327 - +0.9
535,327 - -0.4
535,327 - -0.4
535,327 - -0.3
535,327 - -0.9
535,344 + +0.7
535,345 - -0.5
535,345 - -0.6
535,345 - +0.8
535,345 - +2.2
535,345 - -1.2
535,345 - -0.9
535,363 + +2.0
535,363 + +0.5
535,429 + Sama_0436 0.21 -1.2
535,430 - Sama_0436 0.21 +1.0
535,430 - Sama_0436 0.21 -0.1
535,433 + Sama_0436 0.22 -1.3
535,433 + Sama_0436 0.22 -0.2
535,433 + Sama_0436 0.22 +1.0
535,434 - Sama_0436 0.22 +0.9
535,434 - Sama_0436 0.22 -0.6
535,434 - Sama_0436 0.22 -1.4
535,434 - Sama_0436 0.22 +0.2
535,434 - Sama_0436 0.22 -1.6
535,434 - Sama_0436 0.22 +0.1
535,434 - Sama_0436 0.22 +3.1
535,434 - Sama_0436 0.22 -2.2
535,434 - Sama_0436 0.22 +0.2
535,434 - Sama_0436 0.22 -0.2
535,434 - Sama_0436 0.22 +0.1
535,434 - Sama_0436 0.22 -1.2
535,434 - Sama_0436 0.22 +0.4
535,435 + Sama_0436 0.22 -1.0
535,435 + Sama_0436 0.22 -0.1
535,435 + Sama_0436 0.22 -0.9
535,488 + Sama_0436 0.31 +2.9
535,489 - Sama_0436 0.31 +1.1
535,489 - Sama_0436 0.31 -1.0
535,508 + Sama_0436 0.35 -0.2
535,508 + Sama_0436 0.35 -1.0
535,508 + Sama_0436 0.35 -1.4
535,509 - Sama_0436 0.35 +0.6
535,537 + Sama_0436 0.40 -0.7
535,537 + Sama_0436 0.40 -0.8
535,537 + Sama_0436 0.40 -0.8
535,538 - Sama_0436 0.40 -0.4
535,538 - Sama_0436 0.40 -0.7
535,538 - Sama_0436 0.40 +0.5
535,552 + Sama_0436 0.42 +0.0
535,553 - Sama_0436 0.43 -0.6
535,553 - Sama_0436 0.43 +1.1
535,571 + Sama_0436 0.46 -0.4
535,571 + Sama_0436 0.46 +0.3
535,571 + Sama_0436 0.46 -1.1
535,571 + Sama_0436 0.46 -1.5
535,571 + Sama_0436 0.46 -1.4
535,571 + Sama_0436 0.46 +0.1
535,571 + Sama_0436 0.46 +0.6
535,572 - Sama_0436 0.46 -1.8
535,572 - Sama_0436 0.46 +0.6
535,572 - Sama_0436 0.46 +0.5
535,575 - Sama_0436 0.46 +0.8
535,608 + Sama_0436 0.52 +0.6
535,608 + Sama_0436 0.52 -2.2
535,608 + Sama_0436 0.52 +1.7
535,615 + Sama_0436 0.54 +0.9
535,616 - Sama_0436 0.54 -0.5
535,634 + Sama_0436 0.57 +0.3
535,634 + Sama_0436 0.57 -1.6
535,634 + Sama_0436 0.57 -1.2
535,636 + Sama_0436 0.57 -4.0
535,636 + Sama_0436 0.57 +0.4
535,637 - Sama_0436 0.57 -0.6
535,637 - Sama_0436 0.57 -0.8
535,637 - Sama_0436 0.57 -1.6
535,671 + Sama_0436 0.63 -2.5
535,750 + Sama_0436 0.77 -2.1
535,750 + Sama_0436 0.77 -2.2
535,751 - Sama_0436 0.77 -0.8
535,757 + Sama_0436 0.78 -2.1
535,758 - Sama_0436 0.79 +0.5
535,758 - Sama_0436 0.79 +0.4
535,758 - Sama_0436 0.79 -0.5
535,830 - +0.4
535,831 + -0.5
535,831 + -1.9
535,831 + -1.5
535,832 - +0.9
535,852 + -1.2
535,871 + -1.6
535,871 + -0.4
535,871 + -0.5
535,872 - -2.9
535,877 + -2.7
535,877 + -0.9
535,877 + -0.3
535,877 + -0.8
535,878 - +4.7
535,878 - -0.6
535,878 - -1.1
535,945 + -2.6
535,945 + -0.4
535,946 - -1.2
535,946 - -0.5
535,949 + -0.7
535,949 + +2.3
535,949 + -0.8
535,949 + +0.1
535,950 - +2.4
535,953 + +1.7
535,954 - -0.7
535,967 + +0.5
535,967 + -1.9
535,968 - -1.4
535,968 - +0.3
535,968 - -2.0
535,968 - -0.5
535,968 - +0.6
536,006 + +0.2
536,122 + Sama_0437 0.19 -3.3
536,123 - Sama_0437 0.19 +0.4
536,123 - Sama_0437 0.19 +2.5
536,123 - Sama_0437 0.19 +1.3
536,123 - Sama_0437 0.19 +0.7
536,208 + Sama_0437 0.31 -0.0
536,289 + Sama_0437 0.42 -0.5
536,289 + Sama_0437 0.42 -1.0
536,289 + Sama_0437 0.42 -1.2
536,289 + Sama_0437 0.42 -2.7
536,289 + Sama_0437 0.42 +1.8
536,289 + Sama_0437 0.42 -0.4
536,289 + Sama_0437 0.42 -0.9
536,289 + Sama_0437 0.42 -0.3
536,289 + Sama_0437 0.42 -1.2
536,289 + Sama_0437 0.42 +0.8
536,290 - Sama_0437 0.42 +1.3
536,290 - Sama_0437 0.42 -0.4
536,290 - Sama_0437 0.42 -1.8
536,290 - Sama_0437 0.42 +0.6
536,290 - Sama_0437 0.42 +2.1
536,423 + Sama_0437 0.61 -0.5
536,423 + Sama_0437 0.61 +1.1
536,423 + Sama_0437 0.61 -0.4
536,424 - Sama_0437 0.61 +2.1
536,424 - Sama_0437 0.61 +0.8
536,424 - Sama_0437 0.61 -1.2
536,432 + Sama_0437 0.62 -1.9
536,433 - Sama_0437 0.62 +0.5
536,465 + Sama_0437 0.67 +0.8
536,509 + Sama_0437 0.73 +1.4
536,509 + Sama_0437 0.73 -1.5
536,510 - Sama_0437 0.73 -0.9
536,582 + Sama_0437 0.83 -3.1
536,592 - Sama_0437 0.84 -0.2
536,592 - Sama_0437 0.84 -1.4
536,594 + Sama_0437 0.85 +1.8
536,594 + Sama_0437 0.85 +1.7
536,595 - Sama_0437 0.85 -1.2
536,595 - Sama_0437 0.85 +0.2
536,682 + -0.5
536,682 + +1.0
536,683 - +2.3
536,683 - +0.3
536,683 - +1.5
536,683 - +0.8
536,686 + -0.5
536,686 + -0.8
536,686 + +0.8
536,723 + -0.2
536,724 - -1.4
536,879 + -3.5
536,879 + +1.0

Or see this region's nucleotide sequence