Strain Fitness in Shewanella oneidensis MR-1 around SO2951

Experiment: Cisplatin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.004 mg/ml
3,087,008	+		SO2949	0.55	+2.2
3,087,019	+		SO2949	0.56	+1.6
3,087,128	-		SO2949	0.71	+1.8
3,087,128	-		SO2949	0.71	+3.3
3,087,138	+		SO2949	0.73	+1.6
3,087,149	+		SO2949	0.74	+3.8
3,087,162	-		SO2949	0.76	+1.3
3,087,306	+				+2.9
3,087,306	+				+4.2
3,087,306	+				+3.1
3,087,306	+				+2.2
3,087,306	+				+1.9
3,087,314	-				+4.5
3,087,314	-				+4.2
3,087,376	+				+1.7
3,087,376	+				+2.5
3,087,383	+				+2.2
3,087,384	-				+4.1
3,087,384	-				+3.4
3,087,384	-				+3.5
3,087,384	-				+4.3
3,087,477	-		SO2950	0.22	+1.4
3,087,477	-		SO2950	0.22	+3.5
3,087,590	+		SO2950	0.40	+2.1
3,087,674	-		SO2950	0.52	+1.6
3,087,674	-		SO2950	0.52	+1.7
3,087,674	-		SO2950	0.52	+2.1
3,087,674	-		SO2950	0.52	+4.5
3,087,689	-		SO2950	0.55	+2.2
3,087,765	+		SO2950	0.66	+3.3
3,087,771	+		SO2950	0.67	+1.7
3,087,883	+		SO2950	0.84	+3.4
3,087,891	-		SO2950	0.85	+3.7
3,087,895	+		SO2950	0.86	+4.2
3,087,895	-		SO2950	0.86	+3.1
3,087,903	+		SO2950	0.87	+3.0
3,087,910	+		SO2950	0.88	+4.4
3,087,911	-		SO2950	0.88	+3.7
3,087,950	+				+2.6
3,088,064	-				+1.8
3,088,166	-				+3.6
3,088,173	+				+1.6
3,088,181	-				+3.5
3,088,190	-				+2.2
3,088,200	+				+1.9
3,088,244	-		SO2951	0.12	+1.3
3,088,251	+		SO2951	0.12	+4.1
3,088,251	+		SO2951	0.12	+3.0
3,088,279	+		SO2951	0.14	+1.6
3,088,415	-		SO2951	0.20	+2.4
3,088,437	-		SO2951	0.21	+2.7
3,088,437	-		SO2951	0.21	+4.0
3,088,442	-		SO2951	0.21	+3.9
3,088,510	-		SO2951	0.25	+2.0
3,088,512	+		SO2951	0.25	+4.0
3,088,578	-		SO2951	0.28	+1.4
3,088,597	+		SO2951	0.29	+3.0
3,088,600	+		SO2951	0.29	+2.9
3,088,600	+		SO2951	0.29	+2.8
3,088,602	+		SO2951	0.29	+4.5
3,088,602	+		SO2951	0.29	+3.3
3,088,602	+		SO2951	0.29	+3.4
3,088,605	-		SO2951	0.29	+4.0
3,088,605	-		SO2951	0.29	+0.9
3,088,608	-		SO2951	0.29	+0.5
3,088,610	-		SO2951	0.29	+3.8
3,088,610	-		SO2951	0.29	+2.2
3,088,647	-		SO2951	0.31	+4.1
3,088,708	-		SO2951	0.34	+3.3
3,088,760	+		SO2951	0.36	+3.7
3,088,773	-		SO2951	0.37	+3.8
3,088,796	+		SO2951	0.38	+4.1
3,088,815	+		SO2951	0.39	+4.1
3,088,825	+		SO2951	0.39	+2.0
3,088,825	+		SO2951	0.39	+3.4
3,088,860	-		SO2951	0.41	+4.9
3,088,863	+		SO2951	0.41	+0.3
3,088,871	-		SO2951	0.42	+2.3
3,088,996	+		SO2951	0.48	+2.9
3,089,004	-		SO2951	0.48	+3.2
3,089,004	-		SO2951	0.48	+1.9
3,089,023	-		SO2951	0.49	+2.7
3,089,023	-		SO2951	0.49	+3.6
3,089,070	+		SO2951	0.51	+2.0
3,089,070	-		SO2951	0.51	+4.3
3,089,091	+		SO2951	0.52	+3.2
3,089,098	+		SO2951	0.52	+3.5
3,089,122	+		SO2951	0.53	+3.0
3,089,181	+		SO2951	0.56	+2.7
3,089,194	-		SO2951	0.57	+2.0
3,089,215	+		SO2951	0.58	+3.6
3,089,238	+		SO2951	0.59	+1.7
3,089,238	+		SO2951	0.59	+3.3
3,089,246	-		SO2951	0.59	+0.5
3,089,247	+		SO2951	0.59	+1.9
3,089,254	-		SO2951	0.60	+1.9
3,089,293	-		SO2951	0.62	+4.1
3,089,410	-		SO2951	0.67	+3.5
3,089,596	+		SO2951	0.76	+0.6
3,089,641	+		SO2951	0.78	+1.7
3,089,641	+		SO2951	0.78	+3.9
3,089,646	+		SO2951	0.78	+4.2
3,089,666	-		SO2951	0.79	+3.4
3,089,678	+		SO2951	0.80	+0.8
3,089,698	+		SO2951	0.81	+4.1
3,089,711	+		SO2951	0.81	+3.5
3,089,795	+		SO2951	0.85	+2.5
3,089,795	+		SO2951	0.85	+4.0
3,089,804	-		SO2951	0.86	+2.0
3,089,858	+		SO2951	0.88	+1.8
3,089,878	-		SO2951	0.89	+2.0
3,089,905	-				+3.3
3,089,915	-				+3.1
3,089,917	+				+1.8
3,089,939	-				+1.4
3,089,987	+				+2.1
3,089,987	+				+2.6
3,089,995	-				+3.3
3,090,198	+		SO2952	0.18	+3.6
3,090,211	-		SO2952	0.21	+1.8
3,090,246	-		SO2952	0.32	+2.0
3,090,246	-		SO2952	0.32	+2.0
3,090,271	+		SO2952	0.39	+3.6
3,090,271	+		SO2952	0.39	+3.6
3,090,310	-		SO2952	0.51	+3.1
3,090,343	+		SO2952	0.61	+2.5
3,090,343	+		SO2952	0.61	+2.7
3,090,351	-		SO2952	0.63	+2.7
3,090,351	-		SO2952	0.63	+4.0
3,090,442	+				+3.9
3,090,490	+				+2.2
3,090,693	+				+3.5
3,090,701	-				+3.4
3,090,701	-				+4.2
3,090,701	-				+3.6
3,090,701	-				+1.6
3,090,726	+				+4.0
3,090,734	-				+1.6
3,090,734	-				+1.4
3,090,994	+	H	SO2953	0.19	+3.1
3,091,089	-	H	SO2953	0.22	+1.9