Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aroB and SO0288 are separated by 18 nucleotides SO0288 and dam are separated by 48 nucleotides dam and SO0290 are separated by 32 nucleotides
SO0287: aroB - 3-dehydroquinate synthase (NCBI ptt file), at 294,362 to 295,441
aroB
SO0288: SO0288 - damX domain protein (NCBI ptt file), at 295,460 to 296,872
SO0288
SO0289: dam - DNA adenine methylase (NCBI ptt file), at 296,921 to 297,760
dam
SO0290: SO0290 - hypothetical protein (NCBI ptt file), at 297,793 to 297,981
SO0290
Position (kb) 295
296
297 Strain fitness (log2 ratio) -1
0
1
2
3 at 294.495 kb on - strand, within aroB at 294.518 kb on - strand, within aroB at 294.520 kb on + strand, within aroB at 294.922 kb on - strand, within aroB at 294.926 kb on + strand, within aroB at 295.001 kb on + strand, within aroB at 295.003 kb on - strand, within aroB at 295.003 kb on - strand, within aroB at 295.067 kb on + strand, within aroB at 295.085 kb on + strand, within aroB at 295.176 kb on - strand, within aroB at 295.178 kb on + strand, within aroB at 295.334 kb on + strand at 295.334 kb on + strand at 295.432 kb on - strand at 295.437 kb on + strand at 295.478 kb on + strand at 295.561 kb on + strand at 295.578 kb on + strand at 295.578 kb on + strand at 295.595 kb on + strand at 295.856 kb on + strand, within SO0288 at 295.856 kb on + strand, within SO0288 at 295.856 kb on + strand, within SO0288 at 295.864 kb on - strand, within SO0288 at 295.876 kb on - strand, within SO0288 at 295.913 kb on - strand, within SO0288 at 295.956 kb on + strand, within SO0288 at 295.993 kb on + strand, within SO0288 at 296.071 kb on + strand, within SO0288 at 296.090 kb on + strand, within SO0288 at 296.098 kb on - strand, within SO0288 at 296.105 kb on - strand, within SO0288 at 296.126 kb on + strand, within SO0288 at 296.152 kb on + strand, within SO0288 at 296.152 kb on + strand, within SO0288 at 296.249 kb on + strand, within SO0288 at 296.408 kb on + strand, within SO0288 at 296.486 kb on - strand, within SO0288 at 296.490 kb on - strand, within SO0288 at 296.505 kb on + strand, within SO0288 at 296.512 kb on + strand, within SO0288 at 296.592 kb on - strand, within SO0288 at 296.592 kb on - strand, within SO0288 at 296.592 kb on - strand, within SO0288 at 296.622 kb on - strand, within SO0288 at 296.632 kb on + strand, within SO0288 at 296.632 kb on + strand, within SO0288 at 296.632 kb on + strand, within SO0288 at 296.640 kb on - strand, within SO0288 at 296.640 kb on - strand, within SO0288 at 296.640 kb on - strand, within SO0288 at 296.640 kb on - strand, within SO0288 at 296.640 kb on - strand, within SO0288 at 296.662 kb on + strand, within SO0288 at 296.662 kb on + strand, within SO0288 at 296.670 kb on - strand, within SO0288 at 296.670 kb on - strand, within SO0288 at 296.670 kb on - strand, within SO0288 at 296.670 kb on - strand, within SO0288 at 296.670 kb on - strand, within SO0288 at 296.670 kb on - strand, within SO0288 at 296.670 kb on - strand, within SO0288 at 296.670 kb on - strand, within SO0288 at 296.678 kb on - strand, within SO0288 at 296.756 kb on + strand at 296.758 kb on - strand at 296.764 kb on - strand at 296.825 kb on + strand at 296.831 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 294,495 - aroB SO0287 0.12 +2.5 294,518 - aroB SO0287 0.14 +0.8 294,520 + aroB SO0287 0.15 +1.1 294,922 - aroB SO0287 0.52 +0.8 294,926 + aroB SO0287 0.52 +0.4 295,001 + aroB SO0287 0.59 +0.6 295,003 - aroB SO0287 0.59 +0.9 295,003 - aroB SO0287 0.59 +0.4 295,067 + aroB SO0287 0.65 +0.8 295,085 + aroB SO0287 0.67 +0.3 295,176 - aroB SO0287 0.75 +1.0 295,178 + aroB SO0287 0.76 +0.8 295,334 + +1.8 295,334 + +3.2 295,432 - +2.5 295,437 + +0.6 295,478 + +2.3 295,561 + +2.5 295,578 + +2.6 295,578 + +1.5 295,595 + +2.1 295,856 + SO0288 0.28 +2.5 295,856 + SO0288 0.28 +2.3 295,856 + SO0288 0.28 +2.1 295,864 - SO0288 0.29 +3.0 295,876 - SO0288 0.29 +2.4 295,913 - SO0288 0.32 +2.5 295,956 + SO0288 0.35 +1.8 295,993 + SO0288 0.38 +2.2 296,071 + SO0288 0.43 +2.9 296,090 + SO0288 0.45 +2.8 296,098 - SO0288 0.45 +2.0 296,105 - SO0288 0.46 +1.6 296,126 + SO0288 0.47 +3.5 296,152 + SO0288 0.49 +2.6 296,152 + SO0288 0.49 +2.1 296,249 + SO0288 0.56 +2.1 296,408 + SO0288 0.67 +2.2 296,486 - SO0288 0.73 +1.5 296,490 - SO0288 0.73 +1.3 296,505 + SO0288 0.74 +0.4 296,512 + SO0288 0.74 +3.2 296,592 - SO0288 0.80 +1.7 296,592 - SO0288 0.80 +0.8 296,592 - SO0288 0.80 +1.9 296,622 - SO0288 0.82 +2.4 296,632 + SO0288 0.83 +1.0 296,632 + SO0288 0.83 +1.2 296,632 + SO0288 0.83 +2.0 296,640 - SO0288 0.84 +2.8 296,640 - SO0288 0.84 +2.0 296,640 - SO0288 0.84 +1.6 296,640 - SO0288 0.84 +2.2 296,640 - SO0288 0.84 +1.7 296,662 + SO0288 0.85 +1.6 296,662 + SO0288 0.85 +0.9 296,670 - SO0288 0.86 +2.1 296,670 - SO0288 0.86 +2.2 296,670 - SO0288 0.86 +1.9 296,670 - SO0288 0.86 +1.4 296,670 - SO0288 0.86 +2.1 296,670 - SO0288 0.86 +1.3 296,670 - SO0288 0.86 +2.2 296,670 - SO0288 0.86 +2.3 296,678 - SO0288 0.86 +1.4 296,756 + +1.3 296,758 - +1.0 296,764 - +1.3 296,825 + +1.2 296,831 - +1.1
Or see this region's nucleotide sequence